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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049728 ID=TCONS_00049728|Name=TCONS_00049728|organism=Clytia hemisphaerica|type=transcript|length=2025bp
ACTTACAATTGCAACACGCTGTCACAATCCTCAGACAATGCTGTGTATGA
CTGAAAATATCTCTCATAAAATCTACAATAATACACTGCATTTCCTGTTG
ATTTGTCCAGCATTAAACCCCTTGTAGCAATTGTAAGTTAATTCTTCTTT
ACTCGATACAATGAATAATGATTATACGaataatcgtcagccgtgcaaaa
ttactcgaatctgattggtttagaggagtgcgattaatcgttaattgcac
tattaccactttttgcactcttcggcggggggacacttttgtccccttat
aaaattttctctttttctaaaaaaactatgatttactaatgattatttac
tgatgATTATACGAATAATTCTTCAAACTTCACCAGATTCACCATCATCT
TTCAGCCCCCATTTGACTTTCTTTTTCAGACACGTGATATAATCTTCTGG
acgttttttattttcatcaggATATTTTCAAGCTTACTGAAATCCTCGTT
CGTTAAATTGTCAAAAAGATTGACATCCTGGATCCAGAAATGGGGACAGT
TCTTTATTTTAACTGCATTAATAACATCATTCAAACACATATCAAAAAGT
GTTTCAATATGGTTATCGTTCCATCGGGCTGGATCTGTATTCTCCAAAGT
GTACATGAAAATTGTCTTCATGTGATAAGATTTAAAGTTTTTACAACACT
GCTTTAGAAAATCTTTCCCAATAATTTTCAATGCAATAAAACATTTCCGT
GCTACGGGCGATATCAATCTCGATAACTCAACTTCGGCTAATGAAAAAGA
GTATCTCCATGTAACTCCTTCCATATCAGTCACCTGAGATTTTGGTACAA
AATGAAACCCCATATCAACAATACGATGAACGTCGGCGCTTGGAGGCCAC
TTTCGAGTCCTCACCGGCCAATTTGAGGAAAATGGCCACTCACCTGGGCA
AGGTATTCCGAAAGTTAAATCAGCATAAAAGAACTGTTTTTCCAGAATGT
GATAATTGAGGCATATTGCAGGTCCCTTTTGAGATATACTGCTGTAGCCT
CCTACTATAAATGTATTCGGAAAAGCACCATAAGGGCGAGATTCGAAAGA
ATCAAAGCCGTCAATTACGCGGATATCAATTTTCATTACAGCCTCTTGGA
TTCTTGTTTTTACTTCCTTAGCTGAGATGACTGAACCAGATGAGTCATGA
AGTTTTACAAATCCTGGATTTAAGTTTACTGATTGAGTTTCAATACGGAT
ATCGCAACCATGATTGAAGCTTGCTCTCACTGATGCATATTCGATCAAAA
AGTCATGATCACTCAATATTGCGTGTCGATCATGCGCATTAAACCTGGTC
ATTCCCCAATACTTTCCATCCACGCTAGATAAAGGTACTGAAAACCTCTC
AGCAACGCTTCCAGTCAATATGGGAACTAAAACTGTTGATTCTTTATGAA
ACACTTCCGAGACTTCTTTCAACAATGGAATCAGTAATGGAATCAGCTTC
GATTCTGATTCTTCTTTATTTTGCTCCAATCCAGTCATATCTGGAATATG
TTCGTCTACAATTTCAAGCTTTTCATTCAAAGTCAGCTTACTTTGTTTTG
CGCGTTTTCGACAAACCAAATTACAGAAATAGTTCAATGTAAGAAGTAAA
ACCAATGCAATTAGATACATCGAACAATTTATTACCAATGAGATTTTATA
TGAATAAACATCCAATTTAGCAGCAAAATGAAAAATCGGTAACAAAATGA
TCACCATGAGTATTAACATTATTATAAGCAAAATATTGTAATAGACAATA
AAGCAGCTCACTTTTTCGATCGCCAAGGCCTGCCAGATATTGACTTTGAA
CAACTTCAGTTCCAGTAATATGGATAGGAACATCAAGACGGAGAAAATGC
AACCACATTGAGCAAGCACATTCTAAGGAGGGGAAAATATTAGGTATGGT
AAGAAAAGCGTTCTGACTTAAAGAATACAGTGGTGTCTCCATAACTCAGA
CACGCACAGGTAACGGACATCTATT Run BLAST on NCBI protein sequence of TCONS_00049728-protein >TCONS_00049728-protein ID=TCONS_00049728-protein|Name=TCONS_00049728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
MFLSILLELKLFKVNIWQALAIEKVSCFIVYYNILLIIMLILMVIILLPI
FHFAAKLDVYSYKISLVINCSMYLIALVLLLTLNYFCNLVCRKRAKQSKL
TLNEKLEIVDEHIPDMTGLEQNKEESESKLIPLLIPLLKEVSEVFHKEST
VLVPILTGSVAERFSVPLSSVDGKYWGMTRFNAHDRHAILSDHDFLIEYA
SVRASFNHGCDIRIETQSVNLNPGFVKLHDSSGSVISAKEVKTRIQEAVM
KIDIRVIDGFDSFESRPYGAFPNTFIVGGYSSISQKGPAICLNYHILEKQ
FFYADLTFGIPCPGEWPFSSNWPVRTRKWPPSADVHRIVDMGFHFVPKSQ
VTDMEGVTWRYSFSLAEVELSRLISPVARKCFIALKIIGKDFLKQCCKNF
KSYHMKTIFMYTLENTDPARWNDNHIETLFDMCLNDVINAVKIKNCPHFW
IQDVNLFDNLTNEDFSKLENILMKIKNVQKIISRV Run BLAST on NCBI transcript from alignment at scaffold_165:292163..294187 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049728 ID=TCONS_00049728|Name=TCONS_00049728|organism=Clytia hemisphaerica|type=transcript|length=2025bp|location=Sequence derived from alignment at scaffold_165:292163..294187 (Clytia hemisphaerica)
AATAGATGTCCGTTACCTGTGCGTGTCTGAGTTATGGAGACACCACTGTA
TTCTTTAAGTCAGAACGCTTTTCTTACCATACCTAATATTTTCCCCTCCT
TAGAATGTGCTTGCTCAATGTGGTTGCATTTTCTCCGTCTTGATGTTCCT
ATCCATATTACTGGAACTGAAGTTGTTCAAAGTCAATATCTGGCAGGCCT
TGGCGATCGAAAAAGTGAGCTGCTTTATTGTCTATTACAATATTTTGCTT
ATAATAATGTTAATACTCATGGTGATCATTTTGTTACCGATTTTTCATTT
TGCTGCTAAATTGGATGTTTATTCATATAAAATCTCATTGGTAATAAATT
GTTCGATGTATCTAATTGCATTGGTTTTACTTCTTACATTGAACTATTTC
TGTAATTTGGTTTGTCGAAAACGCGCAAAACAAAGTAAGCTGACTTTGAA
TGAAAAGCTTGAAATTGTAGACGAACATATTCCAGATATGACTGGATTGG
AGCAAAATAAAGAAGAATCAGAATCGAAGCTGATTCCATTACTGATTCCA
TTGTTGAAAGAAGTCTCGGAAGTGTTTCATAAAGAATCAACAGTTTTAGT
TCCCATATTGACTGGAAGCGTTGCTGAGAGGTTTTCAGTACCTTTATCTA
GCGTGGATGGAAAGTATTGGGGAATGACCAGGTTTAATGCGCATGATCGA
CACGCAATATTGAGTGATCATGACTTTTTGATCGAATATGCATCAGTGAG
AGCAAGCTTCAATCATGGTTGCGATATCCGTATTGAAACTCAATCAGTAA
ACTTAAATCCAGGATTTGTAAAACTTCATGACTCATCTGGTTCAGTCATC
TCAGCTAAGGAAGTAAAAACAAGAATCCAAGAGGCTGTAATGAAAATTGA
TATCCGCGTAATTGACGGCTTTGATTCTTTCGAATCTCGCCCTTATGGTG
CTTTTCCGAATACATTTATAGTAGGAGGCTACAGCAGTATATCTCAAAAG
GGACCTGCAATATGCCTCAATTATCACATTCTGGAAAAACAGTTCTTTTA
TGCTGATTTAACTTTCGGAATACCTTGCCCAGGTGAGTGGCCATTTTCCT
CAAATTGGCCGGTGAGGACTCGAAAGTGGCCTCCAAGCGCCGACGTTCAT
CGTATTGTTGATATGGGGTTTCATTTTGTACCAAAATCTCAGGTGACTGA
TATGGAAGGAGTTACATGGAGATACTCTTTTTCATTAGCCGAAGTTGAGT
TATCGAGATTGATATCGCCCGTAGCACGGAAATGTTTTATTGCATTGAAA
ATTATTGGGAAAGATTTTCTAAAGCAGTGTTGTAAAAACTTTAAATCTTA
TCACATGAAGACAATTTTCATGTACACTTTGGAGAATACAGATCCAGCCC
GATGGAACGATAACCATATTGAAACACTTTTTGATATGTGTTTGAATGAT
GTTATTAATGCAGTTAAAATAAAGAACTGTCCCCATTTCTGGATCCAGGA
TGTCAATCTTTTTGACAATTTAACGAACGAGGATTTCAGTAAGCTTGAAA
ATATcctgatgaaaataaaaaacgtCCAGAAGATTATATCACGTGTCTGA
AAAAGAAAGTCAAATGGGGGCTGAAAGATGATGGTGAATCTGGTGAAGTT
TGAAGAATTATTCGTATAATcatcagtaaataatcattagtaaatcatag
tttttttagaaaaagagaaaattttataaggggacaaaagtgtccccccg
ccgaagagtgcaaaaagtggtaatagtgcaattaacgattaatcgcactc
ctctaaaccaatcagattcgagtaattttgcacggctgacgattattCGT
ATAATCATTATTCATTGTATCGAGTAAAGAAGAATTAACTTACAATTGCT
ACAAGGGGTTTAATGCTGGACAAATCAACAGGAAATGCAGTGTATTATTG
TAGATTTTATGAGAGATATTTTCAGTCATACACAGCATTGTCTGAGGATT
GTGACAGCGTGTTGCAATTGTAAGT Coding sequence (CDS) from alignment at scaffold_165:292163..294187 >TCONS_00049728 ID=TCONS_00049728|Name=TCONS_00049728|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_165:292163..294187 (Clytia hemisphaerica)
ATGTTCCTATCCATATTACTGGAACTGAAGTTGTTCAAAGTCAATATCTG
GCAGGCCTTGGCGATCGAAAAAGTGAGCTGCTTTATTGTCTATTACAATA
TTTTGCTTATAATAATGTTAATACTCATGGTGATCATTTTGTTACCGATT
TTTCATTTTGCTGCTAAATTGGATGTTTATTCATATAAAATCTCATTGGT
AATAAATTGTTCGATGTATCTAATTGCATTGGTTTTACTTCTTACATTGA
ACTATTTCTGTAATTTGGTTTGTCGAAAACGCGCAAAACAAAGTAAGCTG
ACTTTGAATGAAAAGCTTGAAATTGTAGACGAACATATTCCAGATATGAC
TGGATTGGAGCAAAATAAAGAAGAATCAGAATCGAAGCTGATTCCATTAC
TGATTCCATTGTTGAAAGAAGTCTCGGAAGTGTTTCATAAAGAATCAACA
GTTTTAGTTCCCATATTGACTGGAAGCGTTGCTGAGAGGTTTTCAGTACC
TTTATCTAGCGTGGATGGAAAGTATTGGGGAATGACCAGGTTTAATGCGC
ATGATCGACACGCAATATTGAGTGATCATGACTTTTTGATCGAATATGCA
TCAGTGAGAGCAAGCTTCAATCATGGTTGCGATATCCGTATTGAAACTCA
ATCAGTAAACTTAAATCCAGGATTTGTAAAACTTCATGACTCATCTGGTT
CAGTCATCTCAGCTAAGGAAGTAAAAACAAGAATCCAAGAGGCTGTAATG
AAAATTGATATCCGCGTAATTGACGGCTTTGATTCTTTCGAATCTCGCCC
TTATGGTGCTTTTCCGAATACATTTATAGTAGGAGGCTACAGCAGTATAT
CTCAAAAGGGACCTGCAATATGCCTCAATTATCACATTCTGGAAAAACAG
TTCTTTTATGCTGATTTAACTTTCGGAATACCTTGCCCAGGTGAGTGGCC
ATTTTCCTCAAATTGGCCGGTGAGGACTCGAAAGTGGCCTCCAAGCGCCG
ACGTTCATCGTATTGTTGATATGGGGTTTCATTTTGTACCAAAATCTCAG
GTGACTGATATGGAAGGAGTTACATGGAGATACTCTTTTTCATTAGCCGA
AGTTGAGTTATCGAGATTGATATCGCCCGTAGCACGGAAATGTTTTATTG
CATTGAAAATTATTGGGAAAGATTTTCTAAAGCAGTGTTGTAAAAACTTT
AAATCTTATCACATGAAGACAATTTTCATGTACACTTTGGAGAATACAGA
TCCAGCCCGATGGAACGATAACCATATTGAAACACTTTTTGATATGTGTT
TGAATGATGTTATTAATGCAGTTAAAATAAAGAACTGTCCCCATTTCTGG
ATCCAGGATGTCAATCTTTTTGACAATTTAACGAACGAGGATTTCAGTAA
GCTTGAAAATATcctgatgaaaataaaaaacgtCCAGAAGATTATATCAC
GTGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049728-exon-scaffold_165-1491911889:292163..294187 | TCONS_00049728-exon-scaffold_165-1491911889:292163..294187 | Clytia hemisphaerica | exon |
| TCONS_00049728-exon-scaffold_165-1510915933:292163..294187 | TCONS_00049728-exon-scaffold_165-1510915933:292163..294187 | Clytia hemisphaerica | exon |
| TCONS_00049728-exon-scaffold_165-1575043694:292163..294187 | TCONS_00049728-exon-scaffold_165-1575043694:292163..294187 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_165 | supercontig | scaffold_165:292163..294187 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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