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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049729 ID=TCONS_00049729|Name=TCONS_00049729|organism=Clytia hemisphaerica|type=transcript|length=1582bp
TGATTATTGACATACGTTATAAAAAACCAACTTCCTATCACAGACTATTT
CAAATTATTATATATACTCTGTCGATCAAGACTTCTGAAGGGTAAAAAGG
TTACTGTAGAATCATACATATACTCTTgaacaaaattttaagattttgat
tgtattaaaaaatcttatttatTTAACTTGTTGTTGTGTAATTGATTTTA
GGTTTTGcaccttgaaatattttttcgaatATTGTTTCATTGTAATCGAC
GTTGGAAAGATTTTGTCTTTAATTTCAAGTGCTGAAGAAAGAAATACATT
TTAGTGAAGATAAACTAAATAACTGACATACTTTGAGATTTAAACATTCT
GAACAAAATGCGTATCTGGTATCCCTTTCTACAGTTATTGATTGGTATAA
GTGGTGGTGTTTTACCAGGGCtgatcaaaacaacaaaaggaCAATTATTC
AATAAACTAAAAGAACTCAGTAACACTCCAGGGAACATTGATAATCTTAA
AAGCCTCATCAAAACATTTAATCATCCAGTACCAAAAGCAAAAGACTTGA
ATCCAAGTGATTTACATCCTAAACTTGGGACGATCGATTATACATACCAG
TCCATTGAAAGACCACGAAACCTTGGTGAAATCACCAAAGAAGCCTATTC
ACCACAATCGCGAATGAAGGTCACTGTACCGAGATCTATTGACTCTAATT
TTGCCAAATATATGCAAAGATATTTGGAGAAACTCTCATTTTGTCCACTT
GGTGAGAAATGGATCGACCTTGGGGATTATCTGTGGCCAAGATACTTCAA
ATTTACACACTGTATACAAAAGAATTGCTCATATCCTGAAGGTTTAGTAT
GTCAAGAAAAGACTAGCTCTAATCCTGTTAAAATAGCCTTGCTTTATTGG
ACATGCATGTCCAAGATATGTGGAACTTGGGCTAAAATTTATGTCAGTGT
GATAAACGAGTGTCAATGTTCAGGCTGTCTTAGCTGATTTGTATTACCTC
AAGAAATGAACATTGAGTATTAAAAGCACACCTTATTATGGATGTAAAGT
ACCCTATGGAACTTTTGGATGTCCCCTCAGTTTCAATCAAAACGTAAACG
TACTCATTTAGGTGGCTAGTATTAACTATAGTAATGTAAGTGTGGCCAGA
AGAGTCGATCTTTCTCTTGAAATTCGCGCATTCAACTAATTTGATGGTTa
atattgaattattttcgcgaaaaaagacaaaaattaattaatttaaatGA
TCAATATTTCATGGTTGGAATTCAATAATCCCCGTTGTGTATATGAGATC
CACTGGCAATTTTCAGTTTAGAATTAGAATTCTCTCGAGATGATTTAAAG
TTGATGTTTaaagataccttaagggaagagaTTATGGTGGGAAtctaatt
tggcggatggcggaaaaaattaaatttggcgtgAATTTGGCGCCAAAATC
ggcaaaattttctttccgccaaaatttcttcccttaaggtatatttAGAT
TCATATGCAGTACTTTCTGTAATTTTTCATCGACAAGTGGAAAGTATTTT
TCGTGAGTTATTTAATggtaaagatatttttg Run BLAST on NCBI protein sequence of TCONS_00049729-protein >TCONS_00049729-protein ID=TCONS_00049729-protein|Name=TCONS_00049729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MRIWYPFLQLLIGISGGVLPGLIKTTKGQLFNKLKELSNTPGNIDNLKSL
IKTFNHPVPKAKDLNPSDLHPKLGTIDYTYQSIERPRNLGEITKEAYSPQ
SRMKVTVPRSIDSNFAKYMQRYLEKLSFCPLGEKWIDLGDYLWPRYFKFT
HCIQKNCSYPEGLVCQEKTSSNPVKIALLYWTCMSKICGTWAKIYVSVIN
ECQCSGCLS Run BLAST on NCBI transcript from alignment at scaffold_165:305283..306864 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049729 ID=TCONS_00049729|Name=TCONS_00049729|organism=Clytia hemisphaerica|type=transcript|length=1582bp|location=Sequence derived from alignment at scaffold_165:305283..306864 (Clytia hemisphaerica)
caaaaatatctttaccATTAAATAACTCACGAAAAATACTTTCCACTTGT
CGATGAAAAATTACAGAAAGTACTGCATATGAATCTaaatataccttaag
ggaagaaattttggcggaaagaaaattttgccGATTTTGGCGCCAAATTc
acgccaaatttaattttttccgccatccgccaaattagaTTCCCACCATA
AtctcttcccttaaggtatctttAAACATCAACTTTAAATCATCTCGAGA
GAATTCTAATTCTAAACTGAAAATTGCCAGTGGATCTCATATACACAACG
GGGATTATTGAATTCCAACCATGAAATATTGATCatttaaattaattaat
ttttgtcttttttcgcgaaaataattcaatattAACCATCAAATTAGTTG
AATGCGCGAATTTCAAGAGAAAGATCGACTCTTCTGGCCACACTTACATT
ACTATAGTTAATACTAGCCACCTAAATGAGTACGTTTACGTTTTGATTGA
AACTGAGGGGACATCCAAAAGTTCCATAGGGTACTTTACATCCATAATAA
GGTGTGCTTTTAATACTCAATGTTCATTTCTTGAGGTAATACAAATCAGC
TAAGACAGCCTGAACATTGACACTCGTTTATCACACTGACATAAATTTTA
GCCCAAGTTCCACATATCTTGGACATGCATGTCCAATAAAGCAAGGCTAT
TTTAACAGGATTAGAGCTAGTCTTTTCTTGACATACTAAACCTTCAGGAT
ATGAGCAATTCTTTTGTATACAGTGTGTAAATTTGAAGTATCTTGGCCAC
AGATAATCCCCAAGGTCGATCCATTTCTCACCAAGTGGACAAAATGAGAG
TTTCTCCAAATATCTTTGCATATATTTGGCAAAATTAGAGTCAATAGATC
TCGGTACAGTGACCTTCATTCGCGATTGTGGTGAATAGGCTTCTTTGGTG
ATTTCACCAAGGTTTCGTGGTCTTTCAATGGACTGGTATGTATAATCGAT
CGTCCCAAGTTTAGGATGTAAATCACTTGGATTCAAGTCTTTTGCTTTTG
GTACTGGATGATTAAATGTTTTGATGAGGCTTTTAAGATTATCAATGTTC
CCTGGAGTGTTACTGAGTTCTTTTAGTTTATTGAATAATTGtccttttgt
tgttttgatcaGCCCTGGTAAAACACCACCACTTATACCAATCAATAACT
GTAGAAAGGGATACCAGATACGCATTTTGTTCAGAATGTTTAAATCTCAA
AGTATGTCAGTTATTTAGTTTATCTTCACTAAAATGTATTTCTTTCTTCA
GCACTTGAAATTAAAGACAAAATCTTTCCAACGTCGATTACAATGAAACA
ATattcgaaaaaatatttcaaggtgCAAAACCTAAAATCAATTACACAAC
AACAAGTTAAataaataagattttttaatacaatcaaaatcttaaaattt
tgttcAAGAGTATATGTATGATTCTACAGTAACCTTTTTACCCTTCAGAA
GTCTTGATCGACAGAGTATATATAATAATTTGAAATAGTCTGTGATAGGA
AGTTGGTTTTTTATAACGTATGTCAATAATCA Coding sequence (CDS) from alignment at scaffold_165:305283..306864 >TCONS_00049729 ID=TCONS_00049729|Name=TCONS_00049729|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_165:305283..306864 (Clytia hemisphaerica)
TCAGCTAAGACAGCCTGAACATTGACACTCGTTTATCACACTGACATAAA
TTTTAGCCCAAGTTCCACATATCTTGGACATGCATGTCCAATAAAGCAAG
GCTATTTTAACAGGATTAGAGCTAGTCTTTTCTTGACATACTAAACCTTC
AGGATATGAGCAATTCTTTTGTATACAGTGTGTAAATTTGAAGTATCTTG
GCCACAGATAATCCCCAAGGTCGATCCATTTCTCACCAAGTGGACAAAAT
GAGAGTTTCTCCAAATATCTTTGCATATATTTGGCAAAATTAGAGTCAAT
AGATCTCGGTACAGTGACCTTCATTCGCGATTGTGGTGAATAGGCTTCTT
TGGTGATTTCACCAAGGTTTCGTGGTCTTTCAATGGACTGGTATGTATAA
TCGATCGTCCCAAGTTTAGGATGTAAATCACTTGGATTCAAGTCTTTTGC
TTTTGGTACTGGATGATTAAATGTTTTGATGAGGCTTTTAAGATTATCAA
TGTTCCCTGGAGTGTTACTGAGTTCTTTTAGTTTATTGAATAATTGtcct
tttgttgttttgatcaGCCCTGGTAAAACACCACCACTTATACCAATCAA
TAACTGTAGAAAGGGATACCAGATACGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049729-exon-scaffold_165-1491911889:305283..306864 | TCONS_00049729-exon-scaffold_165-1491911889:305283..306864 | Clytia hemisphaerica | exon |
| TCONS_00049729-exon-scaffold_165-1510915933:305283..306864 | TCONS_00049729-exon-scaffold_165-1510915933:305283..306864 | Clytia hemisphaerica | exon |
| TCONS_00049729-exon-scaffold_165-1575043694:305283..306864 | TCONS_00049729-exon-scaffold_165-1575043694:305283..306864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:305283..306864 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029034 | Cystine-knot_cytokine |
Blast
The following BLAST results are available for this feature:
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