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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049730 ID=TCONS_00049730|Name=TCONS_00049730|organism=Clytia hemisphaerica|type=transcript|length=1731bp
GCAAAAACCTCATGCAACAGGGAAATAATCCAAAAATATTGCTTTAAAGA
TCGTcttgcacgttttttttataagaacatccaacatttttgaagcattt
gaacatctcttaactttttgagttgtaagcctaaaaatcttcttaacatg
ttcttattttgaccattttgtgaatatttttgaccattttcctcaGACAA
GGGAAGTTTTTGAGTCCTCAAAggctcaaattgttcttaacttgttctta
tatagtttgttcttataagaaaacgtgtatatcaAGTAGTTAAAAAGAGT
ACTATttagattattttgaaattacacAATACTTTTAGAACTGgtctgac
acaggactttttTCGGCACTTGTCTGAAAATCCTGTGTGAATTAAATGCA
ACCAGAAATGAAGTAACGAAAGGATATtcctttttataaacaaaatagTA
GTTGTTTTTTTTAGGTACAAAATAATATCACGTTTAACgtaaacttttaa
caaaaatgaaTAAGAAGTTTATGCTATAAGTATTTTGGATGAATATGTGT
ATGTGAGCTTTTTAAGTAATGCGTGAactcttgaaaattgaaagaaatcc
ATGAAATGTCAAATTTGTGTGAACTGTGGGAATGCTCAATAATCTAAAAG
AATTCCTAAATAAAGGCCTTAATAAGCCTTTCAGCTGTAAAAACACCTTG
AACTTGTTAGTGGAGCATTTTAAATGCACTTTAAGTGGAttatattttct
ccaaattcAATTTATCGAGCAAAAAGATAACAAAATATTCTGCATGCATT
TTCACAAATCATCATTTTACAATAACTTAACACTTTCTGGACGGTACTCT
CGACAACTTGTTATGTCAAAAGCATTCAGATCTCGGATACATTTAATCTC
TGTATCTCTGGCTTTAACAATGCCAATTTAATTTAAATCGGACCTACTGT
ATGCAGAATAGTTATTTTTGAGGATTAATAAAAAATCGACTAGAGAAACG
AAGGAACTCGGAGAGATTTCTTTTTCGAGTTTGAAATAGTCACTGAAAAT
TGCTCTGAAAGAAAGTATAACTTGTAAATTTGTTGATAAGATCTGGtttg
atttttagaaatttagtaAATAGGGCTATCATTATACAATTTCTTCATTG
GGCCCCtttattatttactttttagAGATGAATATAAATGTTTTTGtggc
gtttttttttaatttttgtcagACTGTTTATCAGTGTAAGGAATATTTTA
ATCGGATTAACATTCGCGAGATTAAACTCGCAAAAGCGCGTGACATTCCT
GACtcgtgaaattaaatccaccacaaaattttaaaaatcgcATTCTCGGC
GGAGAAACCATTTTACAGTCtccatttgtggcaaaaatggctctttttca
gctgttttcgaACTTATTCGCAAAATCAAATCCatgcgaaatttttcaaa
actctgattcgcgaaattaaatccagaaaattttgcgatttttttcgttt
gcgaaatttaatccgattaaagaaGTTTTGATAACATTTGAAGGTCTTAG
TCACTTCTTTTGAGAAACAAGTCTAATGATTTTATCTGTAAATCGTCAGT
TCAATCGAATTGAAAATAGTGACTGGTGACTGATTAAAGTTTTTTATGGT
AACTTGCTCTTCTTGTTATCCAAACcataattttaaacaaaaagaaacca
AAAGAGAATGCTTATCAAACTCCTAGAAAAC Run BLAST on NCBI transcript from alignment at scaffold_165:311110..312840 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049730 ID=TCONS_00049730|Name=TCONS_00049730|organism=Clytia hemisphaerica|type=transcript|length=1731bp|location=Sequence derived from alignment at scaffold_165:311110..312840 (Clytia hemisphaerica)
GTTTTCTAGGAGTTTGATAAGCATTCTCTTTtggtttctttttgtttaaa
attatgGTTTGGATAACAAGAAGAGCAAGTTACCATAAAAAACTTTAATC
AGTCACCAGTCACTATTTTCAATTCGATTGAACTGACGATTTACAGATAA
AATCATTAGACTTGTTTCTCAAAAGAAGTGACTAAGACCTTCAAATGTTA
TCAAAACttctttaatcggattaaatttcgcaaacgaaaaaaatcgcaaa
attttctggatttaatttcgcgaatcagagttttgaaaaatttcgcatGG
ATTTGATTTTGCGAATAAGTtcgaaaacagctgaaaaagagccatttttg
ccacaaatggaGACTGTAAAATGGTTTCTCCGCCGAGAATgcgattttta
aaattttgtggtggatttaatttcacgaGTCAGGAATGTCACGCGCTTTT
GCGAGTTTAATCTCGCGAATGTTAATCCGATTAAAATATTCCTTACACTG
ATAAACAGTctgacaaaaattaaaaaaaaacgccaCAAAAACATTTATAT
TCATCTctaaaaagtaaataataaaGGGGCCCAATGAAGAAATTGTATAA
TGATAGCCCTATTtactaaatttctaaaaatcaaaCCAGATCTTATCAAC
AAATTTACAAGTTATACTTTCTTTCAGAGCAATTTTCAGTGACTATTTCA
AACTCGAAAAAGAAATCTCTCCGAGTTCCTTCGTTTCTCTAGTCGATTTT
TTATTAATCCTCAAAAATAACTATTCTGCATACAGTAGGTCCGATTTAAA
TTAAATTGGCATTGTTAAAGCCAGAGATACAGAGATTAAATGTATCCGAG
ATCTGAATGCTTTTGACATAACAAGTTGTCGAGAGTACCGTCCAGAAAGT
GTTAAGTTATTGTAAAATGATGATTTGTGAAAATGCATGCAGAATATTTT
GTTATCTTTTTGCTCGATAAATTgaatttggagaaaatataaTCCACTTA
AAGTGCATTTAAAATGCTCCACTAACAAGTTCAAGGTGTTTTTACAGCTG
AAAGGCTTATTAAGGCCTTTATTTAGGAATTCTTTTAGATTATTGAGCAT
TCCCACAGTTCACACAAATTTGACATTTCATggatttctttcaattttca
agagtTCACGCATTACTTAAAAAGCTCACATACACATATTCATCCAAAAT
ACTTATAGCATAAACTTCTTAttcatttttgttaaaagtttacGTTAAAC
GTGATATTATTTTGTACCTAAAAAAAACAACTActattttgtttataaaa
aggaATATCCTTTCGTTACTTCATTTCTGGTTGCATTTAATTCACACAGG
ATTTTCAGACAAGTGCCGAaaaaagtcctgtgtcagacCAGTTCTAAAAG
TATTgtgtaatttcaaaataatctaaATAGTACTCTTTTTAACTACTtga
tatacacgttttcttataagaacaaactatataagaacaagttaagaaca
atttgagccTTTGAGGACTCAAAAACTTCCCTTGTCtgaggaaaatggtc
aaaaatattcacaaaatggtcaaaataagaacatgttaagaagattttta
ggcttacaactcaaaaagttaagagatgttcaaatgcttcaaaaatgttg
gatgttcttataaaaaaaacgtgcaagACGATCTTTAAAGCAATATTTTT
GGATTATTTCCCTGTTGCATGAGGTTTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049730-exon-scaffold_165-1491911889:311110..312840 | TCONS_00049730-exon-scaffold_165-1491911889:311110..312840 | Clytia hemisphaerica | exon |
| TCONS_00049730-exon-scaffold_165-1510915933:311110..312840 | TCONS_00049730-exon-scaffold_165-1510915933:311110..312840 | Clytia hemisphaerica | exon |
| TCONS_00049730-exon-scaffold_165-1575043694:311110..312840 | TCONS_00049730-exon-scaffold_165-1575043694:311110..312840 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:311110..312840 . |
Blast
The following BLAST results are available for this feature:
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