TCONS_00049732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049732
Unique NameTCONS_00049732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049732 ID=TCONS_00049732|Name=TCONS_00049732|organism=Clytia hemisphaerica|type=transcript|length=244bp
aattttgacgttcacacttgttttcggaaccgtttcattttggagcgaaa
cggaaccgtaacgtctgaacatggtctaaagtGTTATGCCGGTATAATAT
ATGATCCGTCTACTATGAGGTTGTTTAGTCACGAAATAAGTCAAGTGCTA
TGAATATTGGACAAACGTTACACCATTGTGAATTTGTAAGGCATGCCTTT
AAAACATTTCGTTTATTAAATTCATATATATGGTTCAATTTCCG
Run BLAST on NCBI

transcript from alignment at scaffold_165:329740..329983

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049732 ID=TCONS_00049732|Name=TCONS_00049732|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at scaffold_165:329740..329983 (Clytia hemisphaerica)
CGGAAATTGAACCATATATATGAATTTAATAAACGAAATGTTTTAAAGGC
ATGCCTTACAAATTCACAATGGTGTAACGTTTGTCCAATATTCATAGCAC
TTGACTTATTTCGTGACTAAACAACCTCATAGTAGACGGATCATATATTA
TACCGGCATAACactttagaccatgttcagacgttacggttccgtttcgc
tccaaaatgaaacggttccgaaaacaagtgtgaacgtcaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031537XLOC_031537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049732-exon-scaffold_165-1491911889:329740..329983TCONS_00049732-exon-scaffold_165-1491911889:329740..329983Clytia hemisphaericaexon
TCONS_00049732-exon-scaffold_165-1510915933:329740..329983TCONS_00049732-exon-scaffold_165-1510915933:329740..329983Clytia hemisphaericaexon
TCONS_00049732-exon-scaffold_165-1575043694:329740..329983TCONS_00049732-exon-scaffold_165-1575043694:329740..329983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:329740..329983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.843482	0	0.955033	2.80305	4.54993	3.59542	1.08443	6.09138	5.68629	5.28254	5.98192	4.49403	5.60973	3.49546	3.3527	1.02799	2.53279	1.94702	5.37984	2.81481	1.63105	1.19336	3.86848	2.63776	15.3954	9.69881	5.78291	3.703	0	0.953839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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