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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049734 ID=TCONS_00049734|Name=TCONS_00049734|organism=Clytia hemisphaerica|type=transcript|length=1088bp
GTTTCTTTACCAGTGGAGCTTAATTCTCACAGACGCCTCCTAAACGCTCG
TGAGCTTGAGATGGAACAGAGATGGGTGACATTGAAAATTGCACATCTAC
TGCAACTATAATTGCAGATTCCTTGATCTTGGGTGGTGCACCCGGCTTGA
TCTCGGGCTTTGCTTCTTTGGCATCTGTACCGCTATTTGGAGGATAATTC
TCAGCTTGAGGTTTACGTCGGTACTCGTTCCCAGCACCAACATGTTTCAT
ACGTTTCGCATTGAAGTACTCTCTTGTGTTCTGCCGTGGCCGTAACAATA
TAACGTAACATTTTCTGCTGTACATCAAAAATAGGGTGACATAACAATTG
ATGATTATGATAATGGCTCCTAAGAATTCCTTATCGCTGTGTAGACGACG
GAAATAGGAAATCGGGAAACTAACGCTGAAGGAAACCGACGTGATCAAGA
TAGTGTAGAACAACGACATTGCTTCATTCATGATGTCAGGTAGTTTACGG
CAACGGTACGCTTGGACGGAGCACGTCAGCTGGAAGACGGTTAAGAGTAG
AATCTGGATATACTGATGAATCAGAGTATTGCAATGGTTGAATCTAACCA
TAAATAGATCATCAGTGTACGAAACCATATTTGGTGAAATTTGTAAGGAA
GTTATAGCTAGACAGCCATTGGTCAATATTAACAGTACAAAGACTGTAAA
CGTTTGGAGTACCATTGTTCGTTTAATTTCCGTTGCTTTCAGTTTGATTT
TAGAAGCGAAAGCTTTGNCGTAAGGAATTTATAGCTAGACTGCCATTGGT
CAATATTAATAGTACAAAGACCGTAAAGATTTGGAGTACCATTGTTCGTT
TAATTTCTGTTGCTTTCAGTTTGATTTTAGAAGCAAAAGCTTTGACAAGT
TTCTGCGATTTAGTATAGAGACAGGAGACGTGTAGAGTGTAGAGGATGCT
TAGAATCAAAATTCGTCCTATGCATAATTCAATGTTGAGATATGGTATTA
TATGGAGACATCccgtgaaaaagaaaattgaaaagataCTTCCAAGATGT
AAGAACGATAGGAATTTGTCTGACGAACGCACTATCGG Run BLAST on NCBI protein sequence of TCONS_00049734-protein >TCONS_00049734-protein ID=TCONS_00049734-protein|Name=TCONS_00049734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MVLQTFTVFVLLILTNGCLAITSLQISPNMVSYTDDLFMVRFNHCNTLIH
QYIQILLLTVFQLTCSVQAYRCRKLPDIMNEAMSLFYTILITSVSFSVSF
PISYFRRLHSDKEFLGAIIIIINCYVTLFLMYSRKCYVILLRPRQNTREY
FNAKRMKHVGAGNEYRRKPQAENYPPNSGTDAKEAKPEIKPGAPPKIKES
AIIVAVDVQFSMSPISVPSQAHERLGGVCEN Run BLAST on NCBI transcript from alignment at scaffold_165:365709..366796 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049734 ID=TCONS_00049734|Name=TCONS_00049734|organism=Clytia hemisphaerica|type=transcript|length=1088bp|location=Sequence derived from alignment at scaffold_165:365709..366796 (Clytia hemisphaerica)
CCGATAGTGCGTTCGTCAGACAAATTCCTATCGTTCTTACATCTTGGAAG
tatcttttcaattttctttttcacggGATGTCTCCATATAATACCATATC
TCAACATTGAATTATGCATAGGACGAATTTTGATTCTAAGCATCCTCTAC
ACTCTACACGTCTCCTGTCTCTATACTAAATCGCAGAAACTTGTCAAAGC
TTTTGCTTCTAAAATCAAACTGAAAGCAACAGAAATTAAACGAACAATGG
TACTCCAAATCTTTACGGTCTTTGTACTATTAATATTGACCAATGGCAGT
CTAGCTATAAATTCCTTACGNCAAAGCTTTCGCTTCTAAAATCAAACTGA
AAGCAACGGAAATTAAACGAACAATGGTACTCCAAACGTTTACAGTCTTT
GTACTGTTAATATTGACCAATGGCTGTCTAGCTATAACTTCCTTACAAAT
TTCACCAAATATGGTTTCGTACACTGATGATCTATTTATGGTTAGATTCA
ACCATTGCAATACTCTGATTCATCAGTATATCCAGATTCTACTCTTAACC
GTCTTCCAGCTGACGTGCTCCGTCCAAGCGTACCGTTGCCGTAAACTACC
TGACATCATGAATGAAGCAATGTCGTTGTTCTACACTATCTTGATCACGT
CGGTTTCCTTCAGCGTTAGTTTCCCGATTTCCTATTTCCGTCGTCTACAC
AGCGATAAGGAATTCTTAGGAGCCATTATCATAATCATCAATTGTTATGT
CACCCTATTTTTGATGTACAGCAGAAAATGTTACGTTATATTGTTACGGC
CACGGCAGAACACAAGAGAGTACTTCAATGCGAAACGTATGAAACATGTT
GGTGCTGGGAACGAGTACCGACGTAAACCTCAAGCTGAGAATTATCCTCC
AAATAGCGGTACAGATGCCAAAGAAGCAAAGCCCGAGATCAAGCCGGGTG
CACCACCCAAGATCAAGGAATCTGCAATTATAGTTGCAGTAGATGTGCAA
TTTTCAATGTCACCCATCTCTGTTCCATCTCAAGCTCACGAGCGTTTAGG
AGGCGTCTGTGAGAATTAAGCTCCACTGGTAAAGAAAC Coding sequence (CDS) from alignment at scaffold_165:365709..366796 >TCONS_00049734 ID=TCONS_00049734|Name=TCONS_00049734|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_165:365709..366796 (Clytia hemisphaerica)
ATGGTACTCCAAACGTTTACAGTCTTTGTACTGTTAATATTGACCAATGG
CTGTCTAGCTATAACTTCCTTACAAATTTCACCAAATATGGTTTCGTACA
CTGATGATCTATTTATGGTTAGATTCAACCATTGCAATACTCTGATTCAT
CAGTATATCCAGATTCTACTCTTAACCGTCTTCCAGCTGACGTGCTCCGT
CCAAGCGTACCGTTGCCGTAAACTACCTGACATCATGAATGAAGCAATGT
CGTTGTTCTACACTATCTTGATCACGTCGGTTTCCTTCAGCGTTAGTTTC
CCGATTTCCTATTTCCGTCGTCTACACAGCGATAAGGAATTCTTAGGAGC
CATTATCATAATCATCAATTGTTATGTCACCCTATTTTTGATGTACAGCA
GAAAATGTTACGTTATATTGTTACGGCCACGGCAGAACACAAGAGAGTAC
TTCAATGCGAAACGTATGAAACATGTTGGTGCTGGGAACGAGTACCGACG
TAAACCTCAAGCTGAGAATTATCCTCCAAATAGCGGTACAGATGCCAAAG
AAGCAAAGCCCGAGATCAAGCCGGGTGCACCACCCAAGATCAAGGAATCT
GCAATTATAGTTGCAGTAGATGTGCAATTTTCAATGTCACCCATCTCTGT
TCCATCTCAAGCTCACGAGCGTTTAGGAGGCGTCTGTGAGAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049734-exon-scaffold_165-1491911889:365709..366796 | TCONS_00049734-exon-scaffold_165-1491911889:365709..366796 | Clytia hemisphaerica | exon |
| TCONS_00049734-exon-scaffold_165-1510915933:365709..366796 | TCONS_00049734-exon-scaffold_165-1510915933:365709..366796 | Clytia hemisphaerica | exon |
| TCONS_00049734-exon-scaffold_165-1575043694:365709..366796 | TCONS_00049734-exon-scaffold_165-1575043694:365709..366796 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:365709..366796 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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