TCONS_00049735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049735
Unique NameTCONS_00049735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049735 ID=TCONS_00049735|Name=TCONS_00049735|organism=Clytia hemisphaerica|type=transcript|length=542bp
CTAAAATAAACATTTGCTTTGAAAGCTTTGGAATAAACATTTGTCAAGTT
GAAGAAATTATCTAGTTACTTATCATTAATAAATGCAATAGTTTCTCTAC
CCTACTTAGGGAAAGAATTTCGGGTAATTAGACGAATTGCCACACAAATT
TTGcactaatttgaatttttagtcatttgccaaaattaattctcactaaa
tttaacaaaatacCTTTGCATGCTTTCCCCAAATTATATTCTCTAATAAT
TGATATATTTCGATCTCGTCTCTTTGCAGTGCAGTTTGGAGAATATAAAA
TGGGAGCCATCAGTAAATCGAGCTCCAATTTTTATTGAATAACCGTCCTC
AACACGGTTAGCTTCAAATGAAATCATCAGAAACTCTTACAAAATTACTC
ACTTTCACTATTAAACTCTACATCACATTACAGTCTGATTATCTTGTTTA
TAATGAGCGTCAATACTCAATAGGGAATCTCACAAACTTAAGTACTATTT
TTAGTTCAGTATAGCTTTTCCATGGAATTCAAATTATCCAGG
Run BLAST on NCBI

transcript from alignment at scaffold_165:366858..367399

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049735 ID=TCONS_00049735|Name=TCONS_00049735|organism=Clytia hemisphaerica|type=transcript|length=542bp|location=Sequence derived from alignment at scaffold_165:366858..367399 (Clytia hemisphaerica)
CCTGGATAATTTGAATTCCATGGAAAAGCTATACTGAACTAAAAATAGTA
CTTAAGTTTGTGAGATTCCCTATTGAGTATTGACGCTCATTATAAACAAG
ATAATCAGACTGTAATGTGATGTAGAGTTTAATAGTGAAAGTGAGTAATT
TTGTAAGAGTTTCTGATGATTTCATTTGAAGCTAACCGTGTTGAGGACGG
TTATTCAATAAAAATTGGAGCTCGATTTACTGATGGCTCCCATTTTATAT
TCTCCAAACTGCACTGCAAAGAGACGAGATCGAAATATATCAATTATTAG
AGAATATAATTTGGGGAAAGCATGCAAAGgtattttgttaaatttagtga
gaattaattttggcaaatgactaaaaattcaaattagtgCAAAATTTGTG
TGGCAATTCGTCTAATTACCCGAAATTCTTTCCCTAAGTAGGGTAGAGAA
ACTATTGCATTTATTAATGATAAGTAACTAGATAATTTCTTCAACTTGAC
AAATGTTTATTCCAAAGCTTTCAAAGCAAATGTTTATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031540XLOC_031540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049735-exon-scaffold_165-1491911889:366858..367399TCONS_00049735-exon-scaffold_165-1491911889:366858..367399Clytia hemisphaericaexon
TCONS_00049735-exon-scaffold_165-1510915933:366858..367399TCONS_00049735-exon-scaffold_165-1510915933:366858..367399Clytia hemisphaericaexon
TCONS_00049735-exon-scaffold_165-1575043694:366858..367399TCONS_00049735-exon-scaffold_165-1575043694:366858..367399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:366858..367399 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.24126	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.163952	0	0.118512	0.412035	0.301464	0	0	0	0.102088	0.292174	0.311816	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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