TCONS_00049737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049737
Unique NameTCONS_00049737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049737 ID=TCONS_00049737|Name=TCONS_00049737|organism=Clytia hemisphaerica|type=transcript|length=504bp
GTTGGGTTATTTCCATAACAGGATTGTAGAAGCCGAGAGATTAAACTGTT
AACATGGtgaatgaaaattatcaaatcattTCTTTTGCTTTGGGTTGGAT
CCTAGCCATAACAGTGCTGATGATGATATACGAACTTGGTTTGGGCTTTT
AGTATGCTTTGGGATGGCAACGAACATCTTTTGGATATGACTTGAAACCT
AGAAGAATTTATCCCTCGCTTATTCCAGTGgaaagaagaactgtttgttt
gttattgtttttattggctgttcGACGTGGTTTGTGATCGCTTATTTGAA
AATGTGACATAAATTGAATTGTAGAATGTAAATTGACATTATGATTGAAA
GTAAACTGAAActtgattgtattcgattcgAAAGAATTTAATGAATATTG
CTGGGTGTGGAAATGATTTTCTTCAGTTCTTAGCACCAGTGACCATTCAT
TGGCAAATCTTGACATATCAAAACTTGAcactatttttttgattttgatt
taaa
Run BLAST on NCBI

transcript from alignment at scaffold_165:375195..375698

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049737 ID=TCONS_00049737|Name=TCONS_00049737|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at scaffold_165:375195..375698 (Clytia hemisphaerica)
tttaaatcaaaatcaaaaaaatagtgTCAAGTTTTGATATGTCAAGATTT
GCCAATGAATGGTCACTGGTGCTAAGAACTGAAGAAAATCATTTCCACAC
CCAGCAATATTCATTAAATTCTTTcgaatcgaatacaatcaagTTTCAGT
TTACTTTCAATCATAATGTCAATTTACATTCTACAATTCAATTTATGTCA
CATTTTCAAATAAGCGATCACAAACCACGTCgaacagccaataaaaacaa
taacaaacaaacagttcttctttcCACTGGAATAAGCGAGGGATAAATTC
TTCTAGGTTTCAAGTCATATCCAAAAGATGTTCGTTGCCATCCCAAAGCA
TACTAAAAGCCCAAACCAAGTTCGTATATCATCATCAGCACTGTTATGGC
TAGGATCCAACCCAAAGCAAAAGAaatgatttgataattttcattcaCCA
TGTTAACAGTTTAATCTCTCGGCTTCTACAATCCTGTTATGGAAATAACC
CAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031542XLOC_031542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049737-exon-scaffold_165-1491911889:375195..375698TCONS_00049737-exon-scaffold_165-1491911889:375195..375698Clytia hemisphaericaexon
TCONS_00049737-exon-scaffold_165-1510915933:375195..375698TCONS_00049737-exon-scaffold_165-1510915933:375195..375698Clytia hemisphaericaexon
TCONS_00049737-exon-scaffold_165-1575043694:375195..375698TCONS_00049737-exon-scaffold_165-1575043694:375195..375698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:375195..375698 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.669489	0	0.530583	0	0.610908	0.46331	0	0	0.302789	0.137476	0	0.320379	0	0.332255	0.0874501	0.0797499	0.607617	0.104085	0.772899	0.657368	0.330052	0.773217	0	0.257414	0	0.725205	0	0	0.182241	0.271996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top