TCONS_00049738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049738
Unique NameTCONS_00049738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049738 ID=TCONS_00049738|Name=TCONS_00049738|organism=Clytia hemisphaerica|type=transcript|length=476bp
CTTAAGGTTAAGATTACGAATCATGGTGGTTGGACTACTGGAATATCTCC
AATCATTACATATAAATCTGGATGCTTTGCGTTGGACCATTTCTAATTGG
TTGATGTTTGCTGAAGTATGAGGATCCCAGACAACTGATGCGTATTCAAG
AATCGGCCTCACATAGGTACGATAAGCTGGGAGCTTGATTACTTGGTTAC
ATGTACGCAGGTTACGCTGGAGGAAGCATCTGATTTGGTTGGCTTTTTTC
GAGGTGTACTTTCATCACTGACGTCAAACATCAAACATAGCTTTTTCACT
CTCACCGATCACCCATGTAAAGAAATTAAAGAGTCTATGCGGTAAGGTGT
CTTTTATTTTTCCTGGAACAAAATGTTGTTGTGTTGGTGGCCATGTATAT
TTGGttttgtgacttttgacaatGTCTCTCAGATAAAATGCTGCTATGTA
AATTCTCGGTCTTTGAGATAGTCGTG
Run BLAST on NCBI

transcript from alignment at scaffold_165:377447..377922

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049738 ID=TCONS_00049738|Name=TCONS_00049738|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at scaffold_165:377447..377922 (Clytia hemisphaerica)
CACGACTATCTCAAAGACCGAGAATTTACATAGCAGCATTTTATCTGAGA
GACattgtcaaaagtcacaaaaCCAAATATACATGGCCACCAACACAACA
ACATTTTGTTCCAGGAAAAATAAAAGACACCTTACCGCATAGACTCTTTA
ATTTCTTTACATGGGTGATCGGTGAGAGTGAAAAAGCTATGTTTGATGTT
TGACGTCAGTGATGAAAGTACACCTCGAAAAAAGCCAACCAAATCAGATG
CTTCCTCCAGCGTAACCTGCGTACATGTAACCAAGTAATCAAGCTCCCAG
CTTATCGTACCTATGTGAGGCCGATTCTTGAATACGCATCAGTTGTCTGG
GATCCTCATACTTCAGCAAACATCAACCAATTAGAAATGGTCCAACGCAA
AGCATCCAGATTTATATGTAATGATTGGAGATATTCCAGTAGTCCAACCA
CCATGATTCGTAATCTTAACCTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031543XLOC_031543Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049738-exon-scaffold_165-1491911889:377447..377922TCONS_00049738-exon-scaffold_165-1491911889:377447..377922Clytia hemisphaericaexon
TCONS_00049738-exon-scaffold_165-1510915933:377447..377922TCONS_00049738-exon-scaffold_165-1510915933:377447..377922Clytia hemisphaericaexon
TCONS_00049738-exon-scaffold_165-1575043694:377447..377922TCONS_00049738-exon-scaffold_165-1575043694:377447..377922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:377447..377922 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16969	2.41978	3.41855	2.77745	0.53757	1.13279	0.170832	0.847579	0.783801	0.87722	0.269241	0.314762	0.70697	1.19307	1.11703	0.676732	0.72326	0.817917	0.618588	0.905511	0.642358	0.804817	0.152352	0.554042	0.57065	0.636614	0.546596	0	0.477552	0.450781
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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