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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049739 ID=TCONS_00049739|Name=TCONS_00049739|organism=Clytia hemisphaerica|type=transcript|length=1085bp
TGAATCTGAGATTGGTAGTGATGAAGAAGATGAGGTTGATGGGATTGTGG
AAGCTTATTTGGCAGGTGTGCTGAATGATGAAGAATTTGCAAATTTGATG
GTGGTAGCTGCTAATGGAGGTGTTCGTCGTGAAAGATATTTGCAGAGGTG
GGAAccatttgattttgatgtttggtcTGAGGAAGAATGTCGTGTTGATA
CCAGGTTTAGGAAGGAGGATGTGTTGAAGCTTGTTGATTTGTTTGGTTTA
GGGGAGGAGATTGTGACGTACAACAGGGTGAGGGTTGATTCTGTGGAGGC
ACTGTGTTTGTTGTTGAGGCGGTTAGCATTTCCTTGTAGATTTGTTGATT
TGATGGCAAAGTTTGGTCGACCGAAAGAGACGCTTTGTGTTATTTTCAAT
CACATGCTCAACCATATTTATCACAATTTTAGCCATCTTTTGACATCCTT
TAACCAGCAATGGCTGTCACCACAACGACTCACGTATTATGCTGAAAGAG
TTGCAGCAAAAGGGGCTCCACTCGCCAACTGCTGGGGATTCATTGATGGA
ACCCTGAGACCGATTGCCCGACCAAAACAAAACCAGCGCGTGATGTACAA
TGGTCACAAACGAGTACATGGGTTCAAATTTCAATCCATATCTGCCCCAA
ATGGTTTGATAGCTAACTTTTTTGGACCGCTTGAGGGATCACGTCATGAT
TCCTATTTGTTAGCCCAGTCAGGAATATTAGATGCACTGGAAAGACATTC
GGTTGGTGTGAATGGTGAGGTTTTGTGTGTGTATGGTGACCCTGCATATC
CCTTGAGTGAACATATTCAGACTGGCTTTCCTAATGCTCAACCAGAAGAT
CAAGTTGAATATAACCGAGCCATGTCTAGCGTTCGTGTGTCTGTTGAGTG
GTGCTTTGGTGAGATTGTTGAAAGGTTTCGCTTCACTGATTtcaagaaaa
tgatgaaaacagGATTGAGTCCAGTGGCAAAACAGTATGCAGTGTCGGCC
CTGCTTCAAAATTGCCACAATTGTTTGTATTCTTCAAAGTGTGCTCAATT
TTTTGAATGTGATCCACCTGCTTTGGAAGACTACC Run BLAST on NCBI protein sequence of TCONS_00049739-protein >TCONS_00049739-protein ID=TCONS_00049739-protein|Name=TCONS_00049739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
ESEIGSDEEDEVDGIVEAYLAGVLNDEEFANLMVVAANGGVRRERYLQRW
EPFDFDVWSEEECRVDTRFRKEDVLKLVDLFGLGEEIVTYNRVRVDSVEA
LCLLLRRLAFPCRFVDLMAKFGRPKETLCVIFNHMLNHIYHNFSHLLTSF
NQQWLSPQRLTYYAERVAAKGAPLANCWGFIDGTLRPIARPKQNQRVMYN
GHKRVHGFKFQSISAPNGLIANFFGPLEGSRHDSYLLAQSGILDALERHS
VGVNGEVLCVYGDPAYPLSEHIQTGFPNAQPEDQVEYNRAMSSVRVSVEW
CFGEIVERFRFTDFKKMMKTGLSPVAKQYAVSALLQNCHNCLYSSKCAQF
FECDPPALEDY Run BLAST on NCBI transcript from alignment at scaffold_165:396248..397332 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049739 ID=TCONS_00049739|Name=TCONS_00049739|organism=Clytia hemisphaerica|type=transcript|length=1085bp|location=Sequence derived from alignment at scaffold_165:396248..397332 (Clytia hemisphaerica)
GGTAGTCTTCCAAAGCAGGTGGATCACATTCAAAAAATTGAGCACACTTT
GAAGAATACAAACAATTGTGGCAATTTTGAAGCAGGGCCGACACTGCATA
CTGTTTTGCCACTGGACTCAATCctgttttcatcattttcttgaAATCAG
TGAAGCGAAACCTTTCAACAATCTCACCAAAGCACCACTCAACAGACACA
CGAACGCTAGACATGGCTCGGTTATATTCAACTTGATCTTCTGGTTGAGC
ATTAGGAAAGCCAGTCTGAATATGTTCACTCAAGGGATATGCAGGGTCAC
CATACACACACAAAACCTCACCATTCACACCAACCGAATGTCTTTCCAGT
GCATCTAATATTCCTGACTGGGCTAACAAATAGGAATCATGACGTGATCC
CTCAAGCGGTCCAAAAAAGTTAGCTATCAAACCATTTGGGGCAGATATGG
ATTGAAATTTGAACCCATGTACTCGTTTGTGACCATTGTACATCACGCGC
TGGTTTTGTTTTGGTCGGGCAATCGGTCTCAGGGTTCCATCAATGAATCC
CCAGCAGTTGGCGAGTGGAGCCCCTTTTGCTGCAACTCTTTCAGCATAAT
ACGTGAGTCGTTGTGGTGACAGCCATTGCTGGTTAAAGGATGTCAAAAGA
TGGCTAAAATTGTGATAAATATGGTTGAGCATGTGATTGAAAATAACACA
AAGCGTCTCTTTCGGTCGACCAAACTTTGCCATCAAATCAACAAATCTAC
AAGGAAATGCTAACCGCCTCAACAACAAACACAGTGCCTCCACAGAATCA
ACCCTCACCCTGTTGTACGTCACAATCTCCTCCCCTAAACCAAACAAATC
AACAAGCTTCAACACATCCTCCTTCCTAAACCTGGTATCAACACGACATT
CTTCCTCAgaccaaacatcaaaatcaaatggTTCCCACCTCTGCAAATAT
CTTTCACGACGAACACCTCCATTAGCAGCTACCACCATCAAATTTGCAAA
TTCTTCATCATTCAGCACACCTGCCAAATAAGCTTCCACAATCCCATCAA
CCTCATCTTCTTCATCACTACCAATCTCAGATTCA Coding sequence (CDS) from alignment at scaffold_165:396248..397332 >TCONS_00049739 ID=TCONS_00049739|Name=TCONS_00049739|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at scaffold_165:396248..397332 (Clytia hemisphaerica)
GTAGTCTTCCAAAGCAGGTGGATCACATTCAAAAAATTGAGCACACTTTG
AAGAATACAAACAATTGTGGCAATTTTGAAGCAGGGCCGACACTGCATAC
TGTTTTGCCACTGGACTCAATCctgttttcatcattttcttgaAATCAGT
GAAGCGAAACCTTTCAACAATCTCACCAAAGCACCACTCAACAGACACAC
GAACGCTAGACATGGCTCGGTTATATTCAACTTGATCTTCTGGTTGAGCA
TTAGGAAAGCCAGTCTGAATATGTTCACTCAAGGGATATGCAGGGTCACC
ATACACACACAAAACCTCACCATTCACACCAACCGAATGTCTTTCCAGTG
CATCTAATATTCCTGACTGGGCTAACAAATAGGAATCATGACGTGATCCC
TCAAGCGGTCCAAAAAAGTTAGCTATCAAACCATTTGGGGCAGATATGGA
TTGAAATTTGAACCCATGTACTCGTTTGTGACCATTGTACATCACGCGCT
GGTTTTGTTTTGGTCGGGCAATCGGTCTCAGGGTTCCATCAATGAATCCC
CAGCAGTTGGCGAGTGGAGCCCCTTTTGCTGCAACTCTTTCAGCATAATA
CGTGAGTCGTTGTGGTGACAGCCATTGCTGGTTAAAGGATGTCAAAAGAT
GGCTAAAATTGTGATAAATATGGTTGAGCATGTGATTGAAAATAACACAA
AGCGTCTCTTTCGGTCGACCAAACTTTGCCATCAAATCAACAAATCTACA
AGGAAATGCTAACCGCCTCAACAACAAACACAGTGCCTCCACAGAATCAA
CCCTCACCCTGTTGTACGTCACAATCTCCTCCCCTAAACCAAACAAATCA
ACAAGCTTCAACACATCCTCCTTCCTAAACCTGGTATCAACACGACATTC
TTCCTCAgaccaaacatcaaaatcaaatggTTCCCACCTCTGCAAATATC
TTTCACGACGAACACCTCCATTAGCAGCTACCACCATCAAATTTGCAAAT
TCTTCATCATTCAGCACACCTGCCAAATAAGCTTCCACAATCCCATCAAC
CTCATCTTCTTCATCACTACCAATCTCAGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049739-exon-scaffold_165-1491911889:396248..397332 | TCONS_00049739-exon-scaffold_165-1491911889:396248..397332 | Clytia hemisphaerica | exon |
| TCONS_00049739-exon-scaffold_165-1510915933:396248..397332 | TCONS_00049739-exon-scaffold_165-1510915933:396248..397332 | Clytia hemisphaerica | exon |
| TCONS_00049739-exon-scaffold_165-1575043694:396248..397332 | TCONS_00049739-exon-scaffold_165-1575043694:396248..397332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:396248..397332 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027806 | HARBI1_dom |
Blast
The following BLAST results are available for this feature:
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