TCONS_00049695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049695
Unique NameTCONS_00049695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049695 ID=TCONS_00049695|Name=TCONS_00049695|organism=Clytia hemisphaerica|type=transcript|length=544bp
GTGAAATGGCAGCAAAGGTTGGGATGTCTCAATCACAGACCATAAGCGAC
AGAATGCCACCTTTCATCGATGACGATATCCTTTCTAAAGACAAATGGTT
TTATCAAACTTTCCATGAGACTAAAAACACGCTGAATCCATTCACATCAT
TTGATGCGATGGGGAAGGATCTGTTTGAGAGAGATGAGATCGACGCCACA
ATGGAAGGAACAACATCAGTGACAGCCTTTGGGGAAGAAATTGATCAAAC
ATCTTCTGAGAGTTTCATCGCAAGTGCTGCTTTGAATGACGATGACAGTT
CGCAACCGAAACGAAAAGTAGATCCAACTGTATCAATACCTGGGACAGAC
AAAAAGATCTATACGTCAAAACTAGTGAACATGCTTAATCAAGACCCTAA
GCTTTCAAAAGATCGTTTAACCCGAGTCAGACGACGTCAAGAGTTCACAC
GGAAATCAGTTGACGAAAGTCAGCCTAGTCAATCTACACCTGGTGAAAAC
GTGGCACTCTTTTCCGAATTTGCCTTCGTTGAACGCCTGAATTT
Run BLAST on NCBI

protein sequence of TCONS_00049695-protein

>TCONS_00049695-protein ID=TCONS_00049695-protein|Name=TCONS_00049695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
EMAAKVGMSQSQTISDRMPPFIDDDILSKDKWFYQTFHETKNTLNPFTSF
DAMGKDLFERDEIDATMEGTTSVTAFGEEIDQTSSESFIASAALNDDDSS
QPKRKVDPTVSIPGTDKKIYTSKLVNMLNQDPKLSKDRLTRVRRRQEFTR
KSVDESQPSQSTPGENVALFSEFAFVERLN
Run BLAST on NCBI

transcript from alignment at scaffold_165:408177..408908+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049695 ID=TCONS_00049695|Name=TCONS_00049695|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at scaffold_165:408177..408908+ (Clytia hemisphaerica)
GTGAAATGGCAGCAAAGGTTGGGATGTCTCAATCACAGACCATAAGCGAC
AGAATGCCACCTTTCATCGATGACGATATCCTTTCTAAAGACAAATGGTT
TTATCAAACTTTCCATGAGACTAAAAACACGCTGAATCCATTCACATCAT
TTGATGCGATGGGGAAGGATCTGTTTGAGAGAGATGAGATCGACGCCACA
ATGGAAGGAACAACATCAGTGACAGCCTTTGGGGAAGAAATTGATCAAAC
ATCTTCTGAGAGTTTCATCGCAAGTGCTGCTTTGAATGACGATGACAGTT
CGCAACCGAAACGAAAAGTAGATCCAACTGTATCAATACCTGGGACAGAC
AAAAAGATCTATACGTCAAAACTAGTGAACATGCTTAATCAAGACCCTAA
GCTTTCAAAAGATCGTTTAACCCGAGTCAGGTAAGAAAGGCTTAATTACA
GGACGCCTTAGTGAAGGCTATCAACACTAGCTTAGTTTCCCCACACCGAG
CCACACTCGAATAAGCTAGAGTAATTGCTGAATATAACAgataaaaatgg
ttaaaatggTATAAAAAGCAGGATATGGTACTTTTCATATAAGATAAATA
ATATTTCGTTAATTTTAGACGACGTCAAGAGTTCACACGGAAATCAGTTG
ACGAAAGTCAGCCTAGTCAATCTACACCTGGTGAAAACGTGGCACTCTTT
TCCGAATTTGCCTTCGTTGAACGCCTGAATTT

Coding sequence (CDS) from alignment at scaffold_165:408177..408908+

>TCONS_00049695 ID=TCONS_00049695|Name=TCONS_00049695|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_165:408177..408908+ (Clytia hemisphaerica)
GAAATGGCAGCAAAGGTTGGGATGTCTCAATCACAGACCATAAGCGACAG
AATGCCACCTTTCATCGATGACGATATCCTTTCTAAAGACAAATGGTTTT
ATCAAACTTTCCATGAGACTAAAAACACGCTGAATCCATTCACATCATTT
GATGCGATGGGGAAGGATCTGTTTGAGAGAGATGAGATCGACGCCACAAT
GGAAGGAACAACATCAGTGACAGCCTTTGGGGAAGAAATTGATCAAACAT
CTTCTGAGAGTTTCATCGCAAGTGCTGCTTTGAATGACGATGACAGTTCG
CAACCGAAACGAAAAGTAGATCCAACTGTATCAATACCTGGGACAGACAA
AAAGATCTATACGTCAAAACTAGTGAACATGCTTAATCAAGACCCTAAGC
TTTCAAAAGATCGTTTAACCCGAGTCAGACGACGTCAAGAGTTCACACGG
AAATCAGTTGACGAAAGTCAGCCTAGTCAATCTACACCTGGTGAAAACGT
GGCACTCTTTTCCGAATTTGCCTTCGTTGAACGCCTGAATGAAATGGCAG
CAAAGGTTGGGATGTCTCAATCACAGACCATAAGCGACAGAATGCCACCT
TTCATCGATGACGATATCCTTTCTAAAGACAAATGGTTTTATCAAACTTT
CCATGAGACTAAAAACACGCTGAATCCATTCACATCATTTGATGCGATGG
GGAAGGATCTGTTTGAGAGAGATGAGATCGACGCCACAATGGAAGGAACA
ACATCAGTGACAGCCTTTGGGGAAGAAATTGATCAAACATCTTCTGAGAG
TTTCATCGCAAGTGCTGCTTTGAATGACGATGACAGTTCGCAACCGAAAC
GAAAAGTAGATCCAACTGTATCAATACCTGGGACAGACAAAAAGATCTAT
ACGTCAAAACTAGTGAACATGCTTAATCAAGACCCTAAGCTTTCAAAAGA
TCGTTTAACCCGAGTCAGACGACGTCAAGAGTTCACACGGAAATCAGTTG
ACGAAAGTCAGCCTAGTCAATCTACACCTGGTGAAAACGTGGCACTCTTT
TCCGAATTTGCCTTCGTTGAACGCCTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031512XLOC_031512Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049695-proteinTCONS_00049695-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049695-exon-scaffold_165-1491911889:408177..408606TCONS_00049695-exon-scaffold_165-1491911889:408177..408606Clytia hemisphaericaexon
TCONS_00049695-exon-scaffold_165-1510915933:408177..408606TCONS_00049695-exon-scaffold_165-1510915933:408177..408606Clytia hemisphaericaexon
TCONS_00049695-exon-scaffold_165-1575043694:408177..408606TCONS_00049695-exon-scaffold_165-1575043694:408177..408606Clytia hemisphaericaexon
TCONS_00049695-exon-scaffold_165-1491911889:408795..408908TCONS_00049695-exon-scaffold_165-1491911889:408795..408908Clytia hemisphaericaexon
TCONS_00049695-exon-scaffold_165-1510915933:408795..408908TCONS_00049695-exon-scaffold_165-1510915933:408795..408908Clytia hemisphaericaexon
TCONS_00049695-exon-scaffold_165-1575043694:408795..408908TCONS_00049695-exon-scaffold_165-1575043694:408795..408908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:408177..408908 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.714085	0.112856	0.272312	0.382403	0	0.331626	0	0.423188	0.2113	0.365728	0.541221	0.580813	0	0.407432	0	0	0.102394	0	0.121427	0	0.341112	0	0	0.154977	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top