TCONS_00049825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049825
Unique NameTCONS_00049825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049825 ID=TCONS_00049825|Name=TCONS_00049825|organism=Clytia hemisphaerica|type=transcript|length=358bp
ATTTCTGCTCTTAATCATGTTGAAAACATACATATATTTGGCTATCCTAC
CAGATGCATAAAaccaaaactttgaattttacaGAAGGATTGGAGCTTCC
TTAGAGCAAACCAATGATGAAATCAGACTTTGTACCATAAAATATGACTC
CTCTGCGAATTTAAAGANGATGAAATCAGACTTTGTATCATAAAATATGA
CTCCTCTgcgaatttgaagaaaattggatcatttttcatgatgctatGGA
TGAAAATTGTCCTTTCTGGACTTTGGCAATTTTGGCggttgttgttttga
tttttgaaacttgACAAAGACCTTCTCCATACAAACTGTTACTGGAATTC
GTTAGAGC
Run BLAST on NCBI

transcript from alignment at scaffold_166:656..1013

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049825 ID=TCONS_00049825|Name=TCONS_00049825|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at scaffold_166:656..1013 (Clytia hemisphaerica)
GCTCTAACGAATTCCAGTAACAGTTTGTATGGAGAAGGTCTTTGTcaagt
ttcaaaaatcaaaacaacaaccGCCAAAATTGCCAAAGTCCAGAAAGGAC
AATTTTCATCCatagcatcatgaaaaatgatccaattttcttcaaattcg
cAGAGGAGTCATATTTTATGATACAAAGTCTGATTTCATCNTCTTTAAAT
TCGCAGAGGAGTCATATTTTATGGTACAAAGTCTGATTTCATCATTGGTT
TGCTCTAAGGAAGCTCCAATCCTTCtgtaaaattcaaagttttggtTTTA
TGCATCTGGTAGGATAGCCAAATATATGTATGTTTTCAACATGATTAAGA
GCAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031584XLOC_031584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049825-exon-scaffold_166-1491911889:656..1013TCONS_00049825-exon-scaffold_166-1491911889:656..1013Clytia hemisphaericaexon
TCONS_00049825-exon-scaffold_166-1510915933:656..1013TCONS_00049825-exon-scaffold_166-1510915933:656..1013Clytia hemisphaericaexon
TCONS_00049825-exon-scaffold_166-1575043694:656..1013TCONS_00049825-exon-scaffold_166-1575043694:656..1013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:656..1013 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42863	1.62533	0.808786	1.58254	3.53209	1.26868	0.612245	0.573176	0.401294	0.248534	2.89479	0.792885	0.47507	0.986729	0.540817	0.145095	0	0.549623	0.253111	1.32431	0.920856	0.673742	1.09203	1.48922	0	0	3.91788	0.696878	0.528557	1.07703
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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