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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049741 ID=TCONS_00049741|Name=TCONS_00049741|organism=Clytia hemisphaerica|type=transcript|length=3015bp
cccactcaaaaaaattcttgaaaaaaaaatgtgtgtggatttgtgtgtta
aaagttttttcattttgagttgattttgttgtgagagtttgttattgctt
gataaattgttttctcgctgcgcaagtttctgcgtagctagccggggtat
tTAAAAGGCTGGAACActggattcttccagtcgtttatacaaactaaatc
ccgtattattagtagtattagtattattagtattacacgcattataaacg
actccagtctaggaaacacaaaaatactcacaaaatgatgaaaataagaa
caataaaCAGTTTATAAACATTATTAGGGCTTAAAACTCAGAAATCtcag
aacatccaaaggcttcacaAAAgttctggatgttcttataaaagacgtGT
AGATCTCATCTCAACTatgagactgttcatctaacgtttccagaccttct
aaaaagaacgacaaataactattaaaataCGACAAAAAGAACggcaaacc
ctaaccctaatcctaaccctaactatcaaataGCGATATATTTCGCCGTC
CCAAACCCCGACTTCCACACCTACATATTCATTCCTTTTTGTACTTTACG
CTATTTAAAACAACTAGCGgtttaaagaacgataaattacgCATCTCTAT
TTGggtgggacaagctggagtttttacaagctcttatttgatttggttgg
ttgttaagatgtaataaaagaatcttattactttttctaaagaacgcgtc
atctctatcactttaaatgaccaactagtgaagtatcttgtaaaaactcc
agctcatcccatttgggtgagctggaaacattagaaAAACTAACTCCAAC
TAATTCCATTTTGTGGAATTTTCCATTTTCTCTTGTTGTCAATAAACACA
GAAAGTAATCACAGTTCATCTTGATTTTCGAATGTTACTTTCAAGCATTA
ATGCTTCCAATTTTCGAGGATATATTACTTTTATCTTGACAACTGCCTTG
ACACCGATCATTGATCAATTCTGGGTTGCGTAGCAACGTGTATGCAACGT
ACCAACGGTTTCGGGCTATTTTACCGCTCTTTACCGACGCAGCTATTGGT
TGAAACGAACAGTCGGATCCACGAGTCAAAGGGCTTCCCCACACATTTCT
GGTGAGCTTTTGAGACGTGAGCTGTGATATATTTCGAATGTGAGGTTCCA
TGAGGAATTGACAGAAGCAACGCATAATTGGGTTCTTGAAGACGTTCTCC
ACACGTAAAAAGGAGCTGTACGAATTCGATATATCCATACTCTTGAAAAA
CATTATTGGGTTACGATCAATGCGACCATAAAATAACAGCAAACTGAAAA
TGATGAAGAAGAGACGTTTGACCAGGGACATCAGACCCGTGAACACATTC
acgaagaataaaaagaaggaaAGGACATAAAATAAACGTGGATGCTTCAG
ATTAATTTGCATCTTTGATAATTGCAAATCGGAGAAATAATATCGGATGC
TTAAGCGTTGGATGATTTTAAAAACGATACCAGTGCCAATGAGAGATAAT
ATGTAGCGAAGAAATATCAAGACTAGTGTTCCTGTTGCTATAGCTGCTAG
GATATAAATAATCCCAACAACGATGCCAACTATCACCAAACAACATAGAA
AACCAATGAGCATTGCACTGATTAGGTAAGCTGGAAACACCAATCGATGG
TACAAAGCGATATTATGGCAACCATCATCTTTCTGGTAAAGGTTGTGTTT
TCCCGTGTATATTGCCAGAGTATCATTTTGGTAACAGTACAAGAAATGAA
CCACCATGGCTAGGTACAAGACAATACTGATTACCAACCCTAAATACCAG
GCTATTTCGATGTGTTTGTTAGAATTACTTTTAAATAACTGTAAAATTAG
GGACTGTATTATAAACAAAGTGAAATACAGCAAGACGAAAATCACAGCCA
TACATTGAAGAATTTCACCAGGAAATTTAAACCACGGTTTGAAAacatat
ttcaatttttgaaaatgagttAGCTGCGACTGTTCGTTTGTCTGTTGCAA
AAGATTTTGCAAATACAGAATTTGATGTTTATCAACGACGCTTTTTTCGT
TTGTTGGGAGTTCGTGACAACCTGTTTTGAAGCACGTATATAAGCGATAT
CCGAAACCAAACAAGATGGCAGTGAGAAAGATGAAACTTGGTACCACAGC
TATTGCAATATTCTGTTGTAATGCAGTTTTCGATGCACAGGCATCGTTAA
AATCTAACTGTAGTCCAAGAAAGATAATCTCCCATACAGTGTATCCGATT
CCAACAGCCGATGAAACAAGTATATGCGGAGATGAAATCAACGCAAAAAG
CGGGAAAGATACAAACCCAATCAAAGTTGCTATCAGGATCCTTGAGAGAA
ATGAACAAAGATAATATTCTGGTTGACCTGACAAGCTTGAACAAAGTGTA
AGTCCAACAGTTGTACCAGTATCTCCGATAATGTCTGCAATCTGAAGCGA
CAGATGACCAAAcactaatgacgtcatcaatcgaTTTCGGTCATTGTCTT
GCAGGAACAGGAATGGTGCTTGTGCTGTCAATTTACCTTTTTTAAGTCGA
GAGTAAATCTGCATGAAAATTATGATCAACGTTGGtataaaaaagttgaa
taccAATACAGTGGTATTAGAGGTCGCAGTTGACTggcaagacatttttt
tgatttcttgaaTCAGCACACCactttttttctctatttcatTTGCGATA
TACCATATACAGCTTCATACACACAAACTACTATTGATATTTTAACACAC
GAAAGATACCATCAGATTTTCAAAAGGACAGGATCAGACTcgataaaaca
aattttttgacaaagttTCTTCTTGTAGATAATATTCTAATAGAGACAAA
ACATCAAGAGTCAAATTAGATTGCTATATTCGTAACCtaaatcatttttg
taattcttttattGTGACCGCAATCAAAACCAATTTGCCGTACTAATGAT
ATGTTTCTAGGAAAC Run BLAST on NCBI transcript from alignment at scaffold_166:14578..17592+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049741 ID=TCONS_00049741|Name=TCONS_00049741|organism=Clytia hemisphaerica|type=transcript|length=3015bp|location=Sequence derived from alignment at scaffold_166:14578..17592+ (Clytia hemisphaerica)
cccactcaaaaaaattcttgaaaaaaaaatgtgtgtggatttgtgtgtta
aaagttttttcattttgagttgattttgttgtgagagtttgttattgctt
gataaattgttttctcgctgcgcaagtttctgcgtagctagccggggtat
tTAAAAGGCTGGAACActggattcttccagtcgtttatacaaactaaatc
ccgtattattagtagtattagtattattagtattacacgcattataaacg
actccagtctaggaaacacaaaaatactcacaaaatgatgaaaataagaa
caataaaCAGTTTATAAACATTATTAGGGCTTAAAACTCAGAAATCtcag
aacatccaaaggcttcacaAAAgttctggatgttcttataaaagacgtGT
AGATCTCATCTCAACTatgagactgttcatctaacgtttccagaccttct
aaaaagaacgacaaataactattaaaataCGACAAAAAGAACggcaaacc
ctaaccctaatcctaaccctaactatcaaataGCGATATATTTCGCCGTC
CCAAACCCCGACTTCCACACCTACATATTCATTCCTTTTTGTACTTTACG
CTATTTAAAACAACTAGCGgtttaaagaacgataaattacgCATCTCTAT
TTGggtgggacaagctggagtttttacaagctcttatttgatttggttgg
ttgttaagatgtaataaaagaatcttattactttttctaaagaacgcgtc
atctctatcactttaaatgaccaactagtgaagtatcttgtaaaaactcc
agctcatcccatttgggtgagctggaaacattagaaAAACTAACTCCAAC
TAATTCCATTTTGTGGAATTTTCCATTTTCTCTTGTTGTCAATAAACACA
GAAAGTAATCACAGTTCATCTTGATTTTCGAATGTTACTTTCAAGCATTA
ATGCTTCCAATTTTCGAGGATATATTACTTTTATCTTGACAACTGCCTTG
ACACCGATCATTGATCAATTCTGGGTTGCGTAGCAACGTGTATGCAACGT
ACCAACGGTTTCGGGCTATTTTACCGCTCTTTACCGACGCAGCTATTGGT
TGAAACGAACAGTCGGATCCACGAGTCAAAGGGCTTCCCCACACATTTCT
GGTGAGCTTTTGAGACGTGAGCTGTGATATATTTCGAATGTGAGGTTCCA
TGAGGAATTGACAGAAGCAACGCATAATTGGGTTCTTGAAGACGTTCTCC
ACACGTAAAAAGGAGCTGTACGAATTCGATATATCCATACTCTTGAAAAA
CATTATTGGGTTACGATCAATGCGACCATAAAATAACAGCAAACTGAAAA
TGATGAAGAAGAGACGTTTGACCAGGGACATCAGACCCGTGAACACATTC
acgaagaataaaaagaaggaaAGGACATAAAATAAACGTGGATGCTTCAG
ATTAATTTGCATCTTTGATAATTGCAAATCGGAGAAATAATATCGGATGC
TTAAGCGTTGGATGATTTTAAAAACGATACCAGTGCCAATGAGAGATAAT
ATGTAGCGAAGAAATATCAAGACTAGTGTTCCTGTTGCTATAGCTGCTAG
GATATAAATAATCCCAACAACGATGCCAACTATCACCAAACAACATAGAA
AACCAATGAGCATTGCACTGATTAGGTAAGCTGGAAACACCAATCGATGG
TACAAAGCGATATTATGGCAACCATCATCTTTCTGGTAAAGGTTGTGTTT
TCCCGTGTATATTGCCAGAGTATCATTTTGGTAACAGTACAAGAAATGAA
CCACCATGGCTAGGTACAAGACAATACTGATTACCAACCCTAAATACCAG
GCTATTTCGATGTGTTTGTTAGAATTACTTTTAAATAACTGTAAAATTAG
GGACTGTATTATAAACAAAGTGAAATACAGCAAGACGAAAATCACAGCCA
TACATTGAAGAATTTCACCAGGAAATTTAAACCACGGTTTGAAAacatat
ttcaatttttgaaaatgagttAGCTGCGACTGTTCGTTTGTCTGTTGCAA
AAGATTTTGCAAATACAGAATTTGATGTTTATCAACGACGCTTTTTTCGT
TTGTTGGGAGTTCGTGACAACCTGTTTTGAAGCACGTATATAAGCGATAT
CCGAAACCAAACAAGATGGCAGTGAGAAAGATGAAACTTGGTACCACAGC
TATTGCAATATTCTGTTGTAATGCAGTTTTCGATGCACAGGCATCGTTAA
AATCTAACTGTAGTCCAAGAAAGATAATCTCCCATACAGTGTATCCGATT
CCAACAGCCGATGAAACAAGTATATGCGGAGATGAAATCAACGCAAAAAG
CGGGAAAGATACAAACCCAATCAAAGTTGCTATCAGGATCCTTGAGAGAA
ATGAACAAAGATAATATTCTGGTTGACCTGACAAGCTTGAACAAAGTGTA
AGTCCAACAGTTGTACCAGTATCTCCGATAATGTCTGCAATCTGAAGCGA
CAGATGACCAAAcactaatgacgtcatcaatcgaTTTCGGTCATTGTCTT
GCAGGAACAGGAATGGTGCTTGTGCTGTCAATTTACCTTTTTTAAGTCGA
GAGTAAATCTGCATGAAAATTATGATCAACGTTGGtataaaaaagttgaa
taccAATACAGTGGTATTAGAGGTCGCAGTTGACTggcaagacatttttt
tgatttcttgaaTCAGCACACCactttttttctctatttcatTTGCGATA
TACCATATACAGCTTCATACACACAAACTACTATTGATATTTTAACACAC
GAAAGATACCATCAGATTTTCAAAAGGACAGGATCAGACTcgataaaaca
aattttttgacaaagttTCTTCTTGTAGATAATATTCTAATAGAGACAAA
ACATCAAGAGTCAAATTAGATTGCTATATTCGTAACCtaaatcatttttg
taattcttttattGTGACCGCAATCAAAACCAATTTGCCGTACTAATGAT
ATGTTTCTAGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049741-exon-scaffold_166-1491911889:14578..17592 | TCONS_00049741-exon-scaffold_166-1491911889:14578..17592 | Clytia hemisphaerica | exon |
| TCONS_00049741-exon-scaffold_166-1510915933:14578..17592 | TCONS_00049741-exon-scaffold_166-1510915933:14578..17592 | Clytia hemisphaerica | exon |
| TCONS_00049741-exon-scaffold_166-1575043694:14578..17592 | TCONS_00049741-exon-scaffold_166-1575043694:14578..17592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:14578..17592 + |
Blast
The following BLAST results are available for this feature:
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