TCONS_00049826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049826
Unique NameTCONS_00049826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049826 ID=TCONS_00049826|Name=TCONS_00049826|organism=Clytia hemisphaerica|type=transcript|length=235bp
AGAAACCACTCTTAATGGAATTAGTCTTGTTTCGCTGACATGGTTTCTAC
ATGGTAGCTTCAACAAATGGATACTCAAAACGAATGTATTTTGATTGATT
GTGGGATTGATTGGTATTTGATTTGTGTATTTTGGGGAATAATGACTTAT
TTCAAAGTCCATTCTCTTTAAGTGTGAACATATATTTTTCCCATGTAGAA
ACCACCCTTAATGGAATTAGTCTTATTTCGCTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_166:51386..51620

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049826 ID=TCONS_00049826|Name=TCONS_00049826|organism=Clytia hemisphaerica|type=transcript|length=235bp|location=Sequence derived from alignment at scaffold_166:51386..51620 (Clytia hemisphaerica)
GTTAGCGAAATAAGACTAATTCCATTAAGGGTGGTTTCTACATGGGAAAA
ATATATGTTCACACTTAAAGAGAATGGACTTTGAAATAAGTCATTATTCC
CCAAAATACACAAATCAAATACCAATCAATCCCACAATCAATCAAAATAC
ATTCGTTTTGAGTATCCATTTGTTGAAGCTACCATGTAGAAACCATGTCA
GCGAAACAAGACTAATTCCATTAAGAGTGGTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031585XLOC_031585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049826-exon-scaffold_166-1491911889:51386..51620TCONS_00049826-exon-scaffold_166-1491911889:51386..51620Clytia hemisphaericaexon
TCONS_00049826-exon-scaffold_166-1510915933:51386..51620TCONS_00049826-exon-scaffold_166-1510915933:51386..51620Clytia hemisphaericaexon
TCONS_00049826-exon-scaffold_166-1575043694:51386..51620TCONS_00049826-exon-scaffold_166-1575043694:51386..51620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:51386..51620 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.974822	0.950605	12.1412	12.9581	3.94381	3.11645	1.25329	1.17331	4.92878	6.1051	1.97525	9.08917	5.83491	11.4459	10.5172	8.31641	11.7087	7.50067	4.14503	0	7.54011	11.0334	12.2948	5.08081	0	0.934087	10.6934	4.27961	6.49186	3.30709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top