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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049828 ID=TCONS_00049828|Name=TCONS_00049828|organism=Clytia hemisphaerica|type=transcript|length=814bp
AGTGAATGTTTCCTTTGGCAGTACAGATGGATTGGTGAAGGGCGGGTTAG
GCGGTGCGGTTATAATTACAGTTGGTTGTCCAGTAATTACTGGCGTGGTG
CATTTTACAGTCAAGTTCAAGTTAACGAAACTTTCAACATTATTACACAT
TGCGCAATACTTGTTCTTGAAGATATAGAATCGTTTATCGATAACTGGTA
GTCTTTCAATATCTGGTAAACTTTCGTCCTTTATACATTCTGTCGCGTAT
GAAGAGTCTGGCGGGCAAGAATTGACCAAGAAATATTCCAATCTACTATC
TGGTTTAGCTATAGTCATCTGTTTAAATATTGGTAAACTACCGAATGGTT
CGAAGAATTTACATTGCAGGGGCAGAGTCTTGTCAACctcttttttaaag
tttttcatgtatTCTGATAAGGGAATTGGGTTCGAAGTGTTCCATAATTT
GTCAATACAGCAactttgttttctgaaacaGTCTGGTTCACAATCACAAC
AATCGGAGCCGCATAGAAAAGTCTCTTTCGCTATTTCCATGAAGTCTCCG
GTAAAATTCACAGGGTACGTAAACGCAGATTGGATGAATTCTTCCAAAGG
AAATTCAGTTTggttgtttatatttgaaacGTTTGCCTCGATAACCCATG
AAAGAACAAAGATTATGATCAGTGATGCAAGTATTAATCGAGAAAACATC
TTTTTCTGTAACGTAAAAGACTTctcttttaaaaacaattttctaaATCC
AACCTTTATTGATCGCTAAGCAGATTCTTTCGGGATGAAAATAAATATCA
ACCCAGCatagttt Run BLAST on NCBI protein sequence of TCONS_00049828-protein >TCONS_00049828-protein ID=TCONS_00049828-protein|Name=TCONS_00049828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MFSRLILASLIIIFVLSWVIEANVSNINNQTEFPLEEFIQSAFTYPVNFT
GDFMEIAKETFLCGSDCCDCEPDCFRKQSCCIDKLWNTSNPIPLSEYMKN
FKKEVDKTLPLQCKFFEPFGSLPIFKQMTIAKPDSRLEYFLVNSCPPDSS
YATECIKDESLPDIERLPVIDKRFYIFKNKYCAMCNNVESFVNLNLTVKC
TTPVITGQPTVIITAPPNPPFTNPSVLPKETFT Run BLAST on NCBI transcript from alignment at scaffold_166:93369..94182 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049828 ID=TCONS_00049828|Name=TCONS_00049828|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at scaffold_166:93369..94182 (Clytia hemisphaerica)
aaactatGCTGGGTTGATATTTATTTTCATCCCGAAAGAATCTGCTTAGC
GATCAATAAAGGTTGGATttagaaaattgtttttaaaagagAAGTCTTTT
ACGTTACAGAAAAAGATGTTTTCTCGATTAATACTTGCATCACTGATCAT
AATCTTTGTTCTTTCATGGGTTATCGAGGCAAACgtttcaaatataaaca
accAAACTGAATTTCCTTTGGAAGAATTCATCCAATCTGCGTTTACGTAC
CCTGTGAATTTTACCGGAGACTTCATGGAAATAGCGAAAGAGACTTTTCT
ATGCGGCTCCGATTGTTGTGATTGTGAACCAGACtgtttcagaaaacaaa
gtTGCTGTATTGACAAATTATGGAACACTTCGAACCCAATTCCCTTATCA
GAatacatgaaaaactttaaaaaagagGTTGACAAGACTCTGCCCCTGCA
ATGTAAATTCTTCGAACCATTCGGTAGTTTACCAATATTTAAACAGATGA
CTATAGCTAAACCAGATAGTAGATTGGAATATTTCTTGGTCAATTCTTGC
CCGCCAGACTCTTCATACGCGACAGAATGTATAAAGGACGAAAGTTTACC
AGATATTGAAAGACTACCAGTTATCGATAAACGATTCTATATCTTCAAGA
ACAAGTATTGCGCAATGTGTAATAATGTTGAAAGTTTCGTTAACTTGAAC
TTGACTGTAAAATGCACCACGCCAGTAATTACTGGACAACCAACTGTAAT
TATAACCGCACCGCCTAACCCGCCCTTCACCAATCCATCTGTACTGCCAA
AGGAAACATTCACT Coding sequence (CDS) from alignment at scaffold_166:93369..94182 >TCONS_00049828 ID=TCONS_00049828|Name=TCONS_00049828|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_166:93369..94182 (Clytia hemisphaerica)
ATGTTTTCTCGATTAATACTTGCATCACTGATCATAATCTTTGTTCTTTC
ATGGGTTATCGAGGCAAACgtttcaaatataaacaaccAAACTGAATTTC
CTTTGGAAGAATTCATCCAATCTGCGTTTACGTACCCTGTGAATTTTACC
GGAGACTTCATGGAAATAGCGAAAGAGACTTTTCTATGCGGCTCCGATTG
TTGTGATTGTGAACCAGACtgtttcagaaaacaaagtTGCTGTATTGACA
AATTATGGAACACTTCGAACCCAATTCCCTTATCAGAatacatgaaaaac
tttaaaaaagagGTTGACAAGACTCTGCCCCTGCAATGTAAATTCTTCGA
ACCATTCGGTAGTTTACCAATATTTAAACAGATGACTATAGCTAAACCAG
ATAGTAGATTGGAATATTTCTTGGTCAATTCTTGCCCGCCAGACTCTTCA
TACGCGACAGAATGTATAAAGGACGAAAGTTTACCAGATATTGAAAGACT
ACCAGTTATCGATAAACGATTCTATATCTTCAAGAACAAGTATTGCGCAA
TGTGTAATAATGTTGAAAGTTTCGTTAACTTGAACTTGACTGTAAAATGC
ACCACGCCAGTAATTACTGGACAACCAACTGTAATTATAACCGCACCGCC
TAACCCGCCCTTCACCAATCCATCTGTACTGCCAAAGGAAACATTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049828-exon-scaffold_166-1491911889:93369..94182 | TCONS_00049828-exon-scaffold_166-1491911889:93369..94182 | Clytia hemisphaerica | exon |
| TCONS_00049828-exon-scaffold_166-1510915933:93369..94182 | TCONS_00049828-exon-scaffold_166-1510915933:93369..94182 | Clytia hemisphaerica | exon |
| TCONS_00049828-exon-scaffold_166-1575043694:93369..94182 | TCONS_00049828-exon-scaffold_166-1575043694:93369..94182 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:93369..94182 . |
Blast
The following BLAST results are available for this feature:
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