TCONS_00049829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049829
Unique NameTCONS_00049829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049829 ID=TCONS_00049829|Name=TCONS_00049829|organism=Clytia hemisphaerica|type=transcript|length=347bp
GAGTCTGTTTCTACATATACACGAAAACGCTcaacaaatttcatatttga
tgttttgttttttctcatctttcaACAATGACGTAGATAGAAACCAAATC
GTATTTCGATTGGTTTATTCAACATATTTTCTCACATCTGATTGGATAAT
GAGATTTCGTAAACGTTTTCGattggtctaaaatcaaaacaatctaGAAT
TTATTGTTGAAAGATGGCTAAGCGCATATTCGCGTTTCATAAATTGGCAA
ACAGTTTGTTTCAAAGGTTTGTTTTATAAATCGAAATGATTAAAATATGA
ACATATAAACATATGTACGCATGGGCCCCGACGAGCCATTTTAAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_166:98397..98743

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049829 ID=TCONS_00049829|Name=TCONS_00049829|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at scaffold_166:98397..98743 (Clytia hemisphaerica)
CACTTAAAATGGCTCGTCGGGGCCCATGCGTACATATGTTTATATGTTCA
TATTTTAATCATTTCGATTTATAAAACAAACCTTTGAAACAAACTGTTTG
CCAATTTATGAAACGCGAATATGCGCTTAGCCATCTTTCAACAATAAATT
CtagattgttttgattttagaccaatCGAAAACGTTTACGAAATCTCATT
ATCCAATCAGATGTGAGAAAATATGTTGAATAAACCAATCGAAATACGAT
TTGGTTTCTATCTACGTCATTGTtgaaagatgagaaaaaacaaaacatca
aatatgaaatttgttgAGCGTTTTCGTGTATATGTAGAAACAGACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031588XLOC_031588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049829-exon-scaffold_166-1491911889:98397..98743TCONS_00049829-exon-scaffold_166-1491911889:98397..98743Clytia hemisphaericaexon
TCONS_00049829-exon-scaffold_166-1510915933:98397..98743TCONS_00049829-exon-scaffold_166-1510915933:98397..98743Clytia hemisphaericaexon
TCONS_00049829-exon-scaffold_166-1575043694:98397..98743TCONS_00049829-exon-scaffold_166-1575043694:98397..98743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:98397..98743 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.330523	0.928294	0.43328	0.268344	0.520922	0.513651	0	0.53269	0	0.15666	0	0.197811	0.273286	0.285975	0	0.363722	0	0	0	0	0.352514	0.376212	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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