|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049831 ID=TCONS_00049831|Name=TCONS_00049831|organism=Clytia hemisphaerica|type=transcript|length=966bp
CTCGGATGTCTTTATAGAAGCCCGACAAAAACCGAAACAAACATCTTCGA
tgaaaataataagaacatgaATAAGCTCATAAAAGATCTCTGCCTTAATC
CGAAATACACTGATATATGTCTTATAGGTGACTTTAACTATAAGAAAATC
GATTGGGTCCATTGGTCCTCACCTTGTGAAGAAGATAGCGACGAGGAGAA
ATTCCTTCATGCTTTAAGAGACTGTTTTTTATACCAACATGTCCTTGAAC
CGACACGGCAACGAGGCACCGACAAACCATCAATACTCGATCTCATCCTT
ACAGgagaagaaaatcaagtttcCGAGATAAAATACCTTGCCCCACTCCA
TCTCAGTGATCACAGTGTCCTCTCCTTTAAATTCTATGGCTACTTCACAA
TTAAAAATGAGCTTGATAGATATCAATACAGCAAAGCCAACTACCAGTTT
ATGAGATCTCATCTAAGCCACATCAATTGGTCTATCGAATTCATCCAAAA
GTGGATTGAATTAGATGTGAATGAGAGTTGGGACTTATTCCTAAAACAAA
TGATCGAGCTCCGAAACCTCTATGTGCCACTTACCCACAATAAGAACAAC
CTGTCAAATCAAAGGAGGAAAGGGAAGCATCCCTTAGANNNNNNNNNNAC
ATACTCCAGAGCCAATTCTGTAGTGTCTTTACACGTGAGCCACTTGAACA
ACTCCCTGAATTCCATTCCAGGACGGATAAAGAAGTAGAGATAAATATAC
TAATTGAAACTATAAAAAAGGAACTCAAGGCGTTAAATCCAAACAAATCC
ATGGGGCCAGATTAACTTCACCCAAGGATGCTAAAGGAGCTCGCTGAATA
TATTGCAGAACCACTTTTCctaataatgacaaaatctctCAACGAAAGTT
GTCTCCCAAACGACTGGAAGCATGCTAATGTATCACCTGTTtacaaaaaa
ggaaacaaaaatatag Run BLAST on NCBI protein sequence of TCONS_00049831-protein >TCONS_00049831-protein ID=TCONS_00049831-protein|Name=TCONS_00049831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
LGCLYRSPTKTETNIFDENNKNMNKLIKDLCLNPKYTDICLIGDFNYKKI
DWVHWSSPCEEDSDEEKFLHALRDCFLYQHVLEPTRQRGTDKPSILDLIL
TGEENQVSEIKYLAPLHLSDHSVLSFKFYGYFTIKNELDRYQYSKANYQF
MRSHLSHINWSIEFIQKWIELDVNESWDLFLKQMIELRNLYVPLTHNKNN
LSNQRRKGKHPLXXXXTYSRANSVVSLHVSHLNNSLNSIPGRIKK Run BLAST on NCBI transcript from alignment at scaffold_166:104029..104994 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049831 ID=TCONS_00049831|Name=TCONS_00049831|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at scaffold_166:104029..104994 (Clytia hemisphaerica)
ctatatttttgtttccttttttgtaAACAGGTGATACATTAGCATGCTTC
CAGTCGTTTGGGAGACAACTTTCGTTGagagattttgtcattattagGAA
AAGTGGTTCTGCAATATATTCAGCGAGCTCCTTTAGCATCCTTGGGTGAA
GTTAATCTGGCCCCATGGATTTGTTTGGATTTAACGCCTTGAGTTCCTTT
TTTATAGTTTCAATTAGTATATTTATCTCTACTTCTTTATCCGTCCTGGA
ATGGAATTCAGGGAGTTGTTCAAGTGGCTCACGTGTAAAGACACTACAGA
ATTGGCTCTGGAGTATGTNNNNNNNNNNTCTAAGGGATGCTTCCCTTTCC
TCCTTTGATTTGACAGGTTGTTCTTATTGTGGGTAAGTGGCACATAGAGG
TTTCGGAGCTCGATCATTTGTTTTAGGAATAAGTCCCAACTCTCATTCAC
ATCTAATTCAATCCACTTTTGGATGAATTCGATAGACCAATTGATGTGGC
TTAGATGAGATCTCATAAACTGGTAGTTGGCTTTGCTGTATTGATATCTA
TCAAGCTCATTTTTAATTGTGAAGTAGCCATAGAATTTAAAGGAGAGGAC
ACTGTGATCACTGAGATGGAGTGGGGCAAGGTATTTTATCTCGgaaactt
gattttcttctcCTGTAAGGATGAGATCGAGTATTGATGGTTTGTCGGTG
CCTCGTTGCCGTGTCGGTTCAAGGACATGTTGGTATAAAAAACAGTCTCT
TAAAGCATGAAGGAATTTCTCCTCGTCGCTATCTTCTTCACAAGGTGAGG
ACCAATGGACCCAATCGATTTTCTTATAGTTAAAGTCACCTATAAGACAT
ATATCAGTGTATTTCGGATTAAGGCAGAGATCTTTTATGAGCTTATtcat
gttcttattattttcaTCGAAGATGTTTGTTTCGGTTTTTGTCGGGCTTC
TATAAAGACATCCGAG Coding sequence (CDS) from alignment at scaffold_166:104029..104994 >TCONS_00049831 ID=TCONS_00049831|Name=TCONS_00049831|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_166:104029..104994 (Clytia hemisphaerica)
CTACTTCTTTATCCGTCCTGGAATGGAATTCAGGGAGTTGTTCAAGTGGC
TCACGTGTAAAGACACTACAGAATTGGCTCTGGAGTATGTNNNNNNNNNN
TCTAAGGGATGCTTCCCTTTCCTCCTTTGATTTGACAGGTTGTTCTTATT
GTGGGTAAGTGGCACATAGAGGTTTCGGAGCTCGATCATTTGTTTTAGGA
ATAAGTCCCAACTCTCATTCACATCTAATTCAATCCACTTTTGGATGAAT
TCGATAGACCAATTGATGTGGCTTAGATGAGATCTCATAAACTGGTAGTT
GGCTTTGCTGTATTGATATCTATCAAGCTCATTTTTAATTGTGAAGTAGC
CATAGAATTTAAAGGAGAGGACACTGTGATCACTGAGATGGAGTGGGGCA
AGGTATTTTATCTCGgaaacttgattttcttctcCTGTAAGGATGAGATC
GAGTATTGATGGTTTGTCGGTGCCTCGTTGCCGTGTCGGTTCAAGGACAT
GTTGGTATAAAAAACAGTCTCTTAAAGCATGAAGGAATTTCTCCTCGTCG
CTATCTTCTTCACAAGGTGAGGACCAATGGACCCAATCGATTTTCTTATA
GTTAAAGTCACCTATAAGACATATATCAGTGTATTTCGGATTAAGGCAGA
GATCTTTTATGAGCTTATtcatgttcttattattttcaTCGAAGATGTTT
GTTTCGGTTTTTGTCGGGCTTCTATAAAGACATCCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049831-exon-scaffold_166-1491911889:104029..104994 | TCONS_00049831-exon-scaffold_166-1491911889:104029..104994 | Clytia hemisphaerica | exon |
| TCONS_00049831-exon-scaffold_166-1510915933:104029..104994 | TCONS_00049831-exon-scaffold_166-1510915933:104029..104994 | Clytia hemisphaerica | exon |
| TCONS_00049831-exon-scaffold_166-1575043694:104029..104994 | TCONS_00049831-exon-scaffold_166-1575043694:104029..104994 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:104029..104994 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
|
