TCONS_00049832 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049832
Unique NameTCONS_00049832
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049832 ID=TCONS_00049832|Name=TCONS_00049832|organism=Clytia hemisphaerica|type=transcript|length=255bp
AACCGATCGATAACGATAACGACAGCTTGAATGAAAACCCACCTAACAAA
AACAATTCATAAAACACAACCACAACAATTAGTGAACTTACTATCATCTA
CACAAATGCAGACCAAATGACAtctaagaagaaaaattaacttttaaagC
ACGTTGCTACCGAACAACCTCATATAATTGCGATCACCGAAGTCAACACC
AAACGGATCTCTGAGAGAAAAGATCAAGACTACTCAATTGAGAATTATTC
TACAC
Run BLAST on NCBI

transcript from alignment at scaffold_166:105261..105515

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049832 ID=TCONS_00049832|Name=TCONS_00049832|organism=Clytia hemisphaerica|type=transcript|length=255bp|location=Sequence derived from alignment at scaffold_166:105261..105515 (Clytia hemisphaerica)
GTGTAGAATAATTCTCAATTGAGTAGTCTTGATCTTTTCTCTCAGAGATC
CGTTTGGTGTTGACTTCGGTGATCGCAATTATATGAGGTTGTTCGGTAGC
AACGTGctttaaaagttaatttttcttcttagaTGTCATTTGGTCTGCAT
TTGTGTAGATGATAGTAAGTTCACTAATTGTTGTGGTTGTGTTTTATGAA
TTGTTTTTGTTAGGTGGGTTTTCATTCAAGCTGTCGTTATCGTTATCGAT
CGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031591XLOC_031591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049832-exon-scaffold_166-1491911889:105261..105515TCONS_00049832-exon-scaffold_166-1491911889:105261..105515Clytia hemisphaericaexon
TCONS_00049832-exon-scaffold_166-1510915933:105261..105515TCONS_00049832-exon-scaffold_166-1510915933:105261..105515Clytia hemisphaericaexon
TCONS_00049832-exon-scaffold_166-1575043694:105261..105515TCONS_00049832-exon-scaffold_166-1575043694:105261..105515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:105261..105515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.67068	6.22103	4.0129	7.06679	1.91181	3.02147	1.82264	4.26583	2.98661	1.47976	14.3629	3.77664	4.24281	4.4062	5.635	3.8875	4.25696	5.45405	2.26052	1.57698	0	1.00286	4.06368	0.738895	5.32731	1.35843	118.347	135.182	17.9734	22.359
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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