TCONS_00049748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049748
Unique NameTCONS_00049748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049748 ID=TCONS_00049748|Name=TCONS_00049748|organism=Clytia hemisphaerica|type=transcript|length=1491bp
gagattatgagcatgcatacatcgtaacttttttaatcgtagggcgagct
tggttacaatagcatacttctcctgtttctttatacctccatgatatAAC
TTCATTATTGTCTCCCAGGTCGTACGACAGATTGAGCGTGAGAAGAACAA
AACACCGCGACCATCGACTGCTGTTAACAAAATGATGGAACAAATGAAAG
AACTGAAAGACAGATACACCATCGTCCCTTCACAGATCAAACTGGTGGAA
AAGAAATTACATTATTTGGCGGAAGGATTTGAAGATTATAAGAAACAACA
AAACACACTTCAAAATGCAATGTCTACCAATAATGAACCTGTTGGGACAG
GCAAAAATGATTTAGCAAGCAATGAGAAATATGAAAGGTTGGAAGTGCGC
GTTGACAATATAAAGACCGTAttaaatgttttgaaagatGTTCTTACAGA
CAAAGTCAATGATGAACACTCCAAGAACAAGACTGAGAAACTGCTTGCAG
ATCTCAAGAAACGTTTGGACGAATTGAACATGATATCTatggaaaaacaa
gaagaagatgaagatgaagaagagaGTGAAGAAGAATCcgaagaggaaga
agaagaagaaaaaggtgATGGGAAGCCTGATCCCACCCTTGAcgatgatg
aagaagaagatgaagacgaTGAGGAAGATGACGatgaggaagaagaagaa
gagagcGAAGAAGAAGAGGAGGAAGCTACCCCACCTAAAAAGGAACCTAA
AAAGAAGCCAAATAAGAATGAACTTCCAAAACCTGAaacagaagaagaag
aagaagaagaagatgaagaggAAGATGAAGACGAGGAAGAAGATGAGGAA
GAGGAGAGTGAGGAGCAGGAAGAAGAAGGGGAGGAAGgtgacgaagaaga
agaagatgaggAAGAGGAACCCAGTAACCGTCCTGATTCTTCAAGGAGTT
CTGTCCTAGAAATGGCTCTCAGTCGTGAAAATAGTATAGCTCCCGCCGAA
AATTCTTCTAAAAAGAAACCAGGTGCTGGGGCTGCTATTAGGAAACTACC
CTCAGGTGGCAAACGAAGATGATTTATTGGGAAAGATAATGGGATATTGA
TTATAAAATCTTTTGAGGAACTTATATTGTCATAGAAAAATCAATCATGG
TGTCAACAGAAGGTTGGGGTTGTTTATATTAGGATGATTTTCAATGCAAA
TGAACTCAGACGCAAACAAGCAATTCCAGGAGGTAATGATTGAAAGCTGT
GTATTTCAAGGACCTAGTTTTCTCATGTAAATCGCCTGTCTAATAGTTAA
ATTTCCCAGAATTTCTTGTAGGACTTAATGTAGTTTGAAAGACGCCTCAA
GCTAGAGTCCAAACAGAATCTGTTTGGATTCTGTggccaatagacgatat
cggatttagataaatgcaatgcattctggttactagggactctcaaagga
attataatctattataattgatctattataattcctttgag
Run BLAST on NCBI

transcript from alignment at scaffold_166:124791..130348+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049748 ID=TCONS_00049748|Name=TCONS_00049748|organism=Clytia hemisphaerica|type=transcript|length=5558bp|location=Sequence derived from alignment at scaffold_166:124791..130348+ (Clytia hemisphaerica)
gagattatgagcatgcatacatcgtaacttttttaatcgtagggcgagct
tggttacaatagcatacttctcctgtttctttatacctccatgatatAAC
TTCATTATTGTCTCCCAGGTCGTACGACAGATTGAGCGTGAGAAGAACAA
AACACCGCGACCATCGACTGCTGTTAACAAAATGATGGAACAAATGAAAG
AACTGAAAGACAGATACACCATCGTCCCTTCACAGGTATCTTTCCTTTCA
AGGTCTACTTTGGATGATTTTTTATACAAGATTGTTAATTTTTGCGCCTC
TTCGTTTTTTTCTCGAATCCATAAATAGCAGTTATTTAGGCGAAAAGAGG
GAAAACTTCTCACAAATGGGCATACCAAAATTCCAATTTCTTCAATTAAC
ACCTCCACTCTTGTTAAAGCAATCGCCTCCTTCCCCCCTAGTACCAGAAA
GGCTACCACCATGTTCATAAAAGGCTCACATAAACACTGATATTAGGTGG
AAgggatttttcaagaaattgccacatattttgtcactgattgtagattt
tttaatcttcttaaaGCGCATTTCAAAGGCTGGCGAGAAAGAAAGTGAGA
CATGGGTCAGGACAAGGGACTTTAACAGATCTTTATCTCTTTCGTATTTA
GATCAAACTGGTGGAAAAGAAATTACATTATTTGGCGGAAGGATTTGAAG
ATTATAAGAAACAACAAAACACACTTCAAAATGCAATGTCTACCAATAAT
GAGTaagtacacccctgtgtcatagacccctgggtccccagccccactgg
gaaatttgaGTAAAAATTTGTCCTCGGTGGGAATATACCTTGGAAAAACA
GCCCcgctgggaaattgactttgatttcatccccagtagaaattcaatgt
ttaaaaattgcacttcaaaaccatgcccactggattttttaatattagaa
caatataatttctacccccattgggatttcaataggaatttttatcccca
ctgaagaaaaaagtttgacCGGGACTGTGAGCCAGGGGTGTGTAAGTGCA
AGTCTCTTTAGCTACCGTCGTTTGGAGGAGGGGGTAAGTTTCCACTCTCA
GAAGACTAACCCCTGACTAAGATCGCTCACTTTTCGACTTTTTCAGAATG
ACTCTACTGTTTTCCAGGATAGCCATCTAAAAACTGTAAAGAGTTTTTTC
AAGAAGTACGGAAAATACCTAGGGTTGACTAAGGAAGCTTTTTTAACTAG
CTGGAAAACTTGTCTTTTCCCGCTAGAAAGTGAAACCTTAGTGCGGAAAA
gggaatcttataaaaaaacgacgATAATTGACTCCCACCAAATGGAAGTC
AGTTGAAATGTCTCTAGTTCAAGAGCTGTTGGCCTTTTTATTAGGTCATA
AGCCTTAGGGCTTAAATTTAGGTCACGAACCtcatggctgaaattttgca
ggtGATTAGTACAACCCTCAGCCAAAGAAAGTAATAATCGATTGAGATGT
TGAGATGCATGTGTGCGCTTTGTttagttttcaaagttttacagACTGAT
TGATTGACTTTTCATTTATCATCTTTACTTTCTTTAGACCTGTTGGGACA
GGCAAAAATGATTTAGCAAGCAATGAGAAATATGAAAGGGTAAGTTTGAT
ACGTTTTTCACTACaccataaaatatattttaaagggATTCTTTATCAAA
TTGCTTTAGGTCTCCttgataatattttcaattttatactTCGTAATTTT
TTTTTNCCTAGTACCAGAAAGGCTACCACCATGTTCATAAAAGGCTCACA
TAAACACTGATATTAGGTGGAAgggatttttcaagaaattgccacatatt
ttgtcactgattgtagattttttaatcttcttaaaGCGCATTTCAAAGGC
TGGCGAGAAAGAAAGTGAGACATGGGTCAGGACAAGGGACTTTAACAGAT
CTTTATCTCTTTCGTATTTAGATCAAACTGGTGGAAAAGAAATTACATTA
TTTGGCGGAAGGATTTGAAGATTATAAGAAACAACAAAACACACTTCAAA
ATGCAATGTCTACCAATAATGAGTaagtacacccctgtgtcatagacccc
tgggtccccagccccactgggaaatttgaGTAAAAATTTGTCCTCGGTGG
GAATATACCTTGGAAAAACAGCCCcgctgggaaattgactttgatttcat
ccccagtagaaattcaatgtttaaaaattgcacttcaaaaccatgcccac
tggattttttaatattagaacaatataatttctacccccattgggatttc
aataggaatttttatccccactgacgAAAAAAGTTTGACCGGGACTGTGA
GCCAGGGGTGTGTAAGTGCAAGTCTCTTTAGCTACCGTCGTTTGGAGGAG
GGGGTAAGTTTCCACTCTCAGAGGACTAACCCCTGACTAAGATCGCTCAC
TTTTCGACTTTTTCAGAATGACTCTACTGTTTTCCAGGATAGCCATCTAA
AAACTGTAAAGAGTTTTTTCAAGAAGTACGGAAAATACCTAGGGTTGACT
AAGGAAGCTTTTTTAACTAGCTGGAAAACTTGTCTTTTCCCGCTAGAAAG
TGAAACCTTAGTGCGGAAAAgggaatcttataaaaaaacgacgATAATTG
ACTCCCACCAAATGGAAGTCAGTTGAAATGTCTCTAGTTCAAGAGCTGTT
GGCCTTTTTATTAGGTCATAAGCCTTAGGGCTTAAATTTAGGTCACGAAC
CtcatggctgaaattttgcaggtGATTAGTACAACCCTCAGCCAAAGAAA
GTAATAATCGATTGAGATGTTGAGATGCATGTGTGCGCTTTGTttagttt
tcaaagttttacagACTGATTGATTGACTTTTCATTTATCATCTTTACTT
TCTTTAGACCTGTTGGGACAGGCAAAAATGATTTAGCAAGCAATGAGAAA
TATGAAAGGGTAAGTTTGATACGTTTTTCACTACaccataaaatatattt
taaagggATTCTTTATCAAATTGCTTTAGGTCTCCttgataatattttca
attttatacttcgtaatttttttttcatttcattaagTTGCGATTCGCAA
ACTTCATGAAACATAATTACCGTAAATTAATATACGAAACTCATTATCAA
GATGAACCCTCCAAAGTTTCAAAGGCTTTCTAGCGGAAAAAAAACTGTTT
AGAACTACGGTTCTAGGAAAAAGAGACACGTTGCAAAATAGCTTCATAAT
CTTGCTACTATATAATCTTTTGAACTTATCATTTTTCAGTTGGAAGTGCG
CGTTGACAATATAAAGACCGTAttaaatgttttgaaagatGTTCTTACAG
ACAAAGTCAATGATGAACACTCCAAGGTGAGATTTGGTTTCTTGGCGTCA
AGTTTTGACTTGTTAATAATCGGGTCATCCAAACTTTTCTAATGAGTATT
CATTAGAACAATTTTACCCCACCTCCAGTCAGTAAAATTTCTCGAAAAAT
TCAGAAGTCTCTTCAAAATAGGTGAGAATTCAGGCCCAAAGATTAAGttc
aatcattaaatttttaaacTGCTTTCTCTTATGCCTGCCTCCCTTAACTC
TTTCAATACTGCCCAACTAAATTTCCTttacttttgaacaattttttcgG
TAATTTTCATTGACCTAATTTAAGTGATTGAAAGTGATAGACCCTGAAAA
GAGCTTTCCCACGAACCCATTTTTTGCTTTAGCCAAAGATTGCCATAAAT
TGCATTTGAAGTTGATATACCGTAGCTTTGAAAAACCCTTAAATTTCAGT
TTTCTATAGTACTGAAGGAGATGATGTCTACTGCACATTGTCATTGTCTT
TAATATAACTTTCATTCCCTACATAGAACAAGACTGAGAAACTGCTTGCA
GATCTCAAGAAACGTTTGGACGAATTGAACATGATATCTatggaaaaaca
agaagaagatgaagatgaagaagagaGTGAAGAAGAATCcgaagaggaag
aagaagaagaaaaaggtgATGGGAAGCCTGATCCCACCCTTGAcgatgat
gaagaagaagatgaagacgaTGAGGAAGATGACGatgaggaagaagaaga
agagagcGAAGAAGAAGAGGAGGAAGCTACCCCACCTAAAAAGGTAAGCA
TCCCTGCATTTGGCATCTATATTGAAATGGATAAGCATCCCTATTGCATT
GGATAAGTATCCGTATTGAAATGGGTAACCATCCATATCAGAATAGGTAA
GCATCCATATCAAAATAGGTAAGCATCCATATCAAAAATGTGTAAGCATG
CTAAGCACCCGACGATAAAAAAGGGTAAgcgccattgagtttcaagcccg
aagggctagaggtcaatctctaacctttctcaggcaagaaaaattgaagc
cttaaaatatgcgccgtatttttgatgacggaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcgggtcgctcaaggccgcgcaactttggtaggatttgttggcttcaaa
tcctaccaaggagattgacctctagcccttcgggcttgaaactcaatggt
aagCGCCCTATTGAAAAGGGTAATTATCTTTACAAAATTTGACTGTATTG
TTTTGTTAGGAACCTAAAAAGAAGCCAAATAAGAATGAACTTCCAAAACC
TGAaacagaagaagaagaagaagaagaagatgaagaggAAGATGAAGACG
AGGAAGAAGATGAGGAAGAGGAGAGTGAGGAGCAGGAAGAAGAAGGGGAG
GAAGgtgacgaagaagaagaagatgaggAAGAGGAACCCAGTAACCGTCC
TGATTCTTCAAGGAGTTCTGTCCTAGAAATGGCTCTCAGTCGTGAAAATA
GTATAGCTCCCGCCGAAAATTCTTCTAAAAAGAAACCAGGTGCTGGGGCT
GCTATTAGGAAACTACCCTCAGGTGGCAAACGAAGATGATTTATTGGGAA
AGATAATGGGATATTGATTATAAAATCTTTTGAGGAACTTATATTGTCAT
AGAAAAATCAATCATGGTGTCAACAGAAGGTTGGGGTTGTTTATATTAGG
ATGATTTTCAATGCAAATGAACTCAGACGCAAACAAGCAATTCCAGGAGG
TAATGATTGAAAGCTGTGTATTTCAAGGACCTAGTTTTCTCATGTAAATC
GCCTGTCTAATAGTTAAATTTCCCAGAATTTCTTGTAGGACTTAATGTAG
TTTGAAAGACGCCTCAAGCTAGAGTCCAAACAGAATCTGTTTGGATTCTG
Tggccaatagacgatatcggatttagataaatgcaatgcattctggttac
tagggactctcaaaggaattataatctattataattgatctattataatt
cctttgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031548XLOC_031548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049748-exon-scaffold_166-1491911889:124791..125025TCONS_00049748-exon-scaffold_166-1491911889:124791..125025Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1510915933:124791..125025TCONS_00049748-exon-scaffold_166-1510915933:124791..125025Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1575043694:124791..125025TCONS_00049748-exon-scaffold_166-1575043694:124791..125025Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1491911889:125442..125542TCONS_00049748-exon-scaffold_166-1491911889:125442..125542Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1510915933:125442..125542TCONS_00049748-exon-scaffold_166-1510915933:125442..125542Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1575043694:125442..125542TCONS_00049748-exon-scaffold_166-1575043694:125442..125542Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1491911889:127698..127749TCONS_00049748-exon-scaffold_166-1491911889:127698..127749Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1510915933:127698..127749TCONS_00049748-exon-scaffold_166-1510915933:127698..127749Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1575043694:127698..127749TCONS_00049748-exon-scaffold_166-1575043694:127698..127749Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1491911889:128080..128166TCONS_00049748-exon-scaffold_166-1491911889:128080..128166Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1510915933:128080..128166TCONS_00049748-exon-scaffold_166-1510915933:128080..128166Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1575043694:128080..128166TCONS_00049748-exon-scaffold_166-1575043694:128080..128166Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1491911889:128667..128933TCONS_00049748-exon-scaffold_166-1491911889:128667..128933Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1510915933:128667..128933TCONS_00049748-exon-scaffold_166-1510915933:128667..128933Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1575043694:128667..128933TCONS_00049748-exon-scaffold_166-1575043694:128667..128933Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1491911889:129600..130348TCONS_00049748-exon-scaffold_166-1491911889:129600..130348Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1510915933:129600..130348TCONS_00049748-exon-scaffold_166-1510915933:129600..130348Clytia hemisphaericaexon
TCONS_00049748-exon-scaffold_166-1575043694:129600..130348TCONS_00049748-exon-scaffold_166-1575043694:129600..130348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:124791..130348 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.148932	0.133431	0.0670763	0.0588167	0.327299	0.236341	0.887542	1.00007	0.677146	0.606576	0.8231	0.673644	1.26481	1.17096	0.444846	0.385267	0.419594	0.526858	2.34641	2.44814	0.666633	0.514973	0.293256	0.522721	1.09654	1.52917	0.294678	0.287261	0.231788	0.268126
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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