TCONS_00049801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049801
Unique NameTCONS_00049801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1008

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049801 ID=TCONS_00049801|Name=TCONS_00049801|organism=Clytia hemisphaerica|type=transcript|length=1008bp
gtttgttattcaatagacgtCATGTTCCCCTAAGTCCCCAAGTCATTCCT
TTTTGTTTAGAtcttgaaaaattaagaaaaatggGAGAAGCAAGGGATGA
ATGTACAATATGTTTATTTGATGTTGATGGTACATTAACCATGCCAAGAC
AGGTCATTACATCAGATATGGAGGATTTTATAAAAGAGCTTCAAAAGAAA
GTGTTGGTTGGTATAGTGGGTGGTTCTGATCTCAAGAAAATTAAAGAACA
AATGGCTGGAGAACATTGTATAAAGATATTTGATTATGTGTTTGCAGAAA
ATGGATTAGTAGCTTACAAAAATGGTGAACTACTTGAAATACAGAACCTC
TCAAAGTATGTTGGTGACGATAAACTTCAAGAATTCATCAATTATTGTTT
AGAATATATGTCAACATTGAAAATACCACGAAAAAGGGGAACCTTTGTAG
AATTTCGCAATGGGATGTTGAATATTTGTCCTGTTGGTAGAAGTTGTAGT
CAAGAAGAAAGAATTGAATTCAATAAATATGACCAGGAACACAATATACG
TAAAAACTTCGTGGCAGCTTTGGAAAAACGATTTCCTGATTCAGGGCTGA
AATATTCAATTGGTGGACAAATCAGTTTCGATGTGTTCCCAAAGGGTTGG
GATAAAACATACTGTTTACGTTTCATTGATACAAGTAAAATCAAAACGAT
TCATTTCTTTGGCGATAAAACGTGGGAGGGTGGCAATGATTTCGAAATTT
TCGCTGACAAACGTACGCTAGGCCACACTGTCACAAGTCCAGAAGATACG
AAAAAGCAGTTAACTGAACTCTTTTTCAAGTAGAAAATCTATTAATATAT
TCTCTAGTTGGtctatttataagaatattagacctgttcttatttttttt
cgtgAGCTGCAATATTAGCCATTTTAAAATGgcctggaattcccgagtta
tttttttccgagttattttgcaCGTGATGTCACAATTTCAGTTTTTATGA
AGTCacca
Run BLAST on NCBI

protein sequence of TCONS_00049801-protein

>TCONS_00049801-protein ID=TCONS_00049801-protein|Name=TCONS_00049801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
LLFNRRHVPLSPQVIPFCLDLEKLRKMGEARDECTICLFDVDGTLTMPRQ
VITSDMEDFIKELQKKVLVGIVGGSDLKKIKEQMAGEHCIKIFDYVFAEN
GLVAYKNGELLEIQNLSKYVGDDKLQEFINYCLEYMSTLKIPRKRGTFVE
FRNGMLNICPVGRSCSQEERIEFNKYDQEHNIRKNFVAALEKRFPDSGLK
YSIGGQISFDVFPKGWDKTYCLRFIDTSKIKTIHFFGDKTWEGGNDFEIF
ADKRTLGHTVTSPEDTKKQLTELFFK
Run BLAST on NCBI

transcript from alignment at scaffold_166:131778..138886-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049801 ID=TCONS_00049801|Name=TCONS_00049801|organism=Clytia hemisphaerica|type=transcript|length=7109bp|location=Sequence derived from alignment at scaffold_166:131778..138886- (Clytia hemisphaerica)
GTTTGTTATTCAATAGACGTCATGTTCCCCTAAGTCCCCAAGTCATTCCT
TTTTGTTTAGATCTTGAAAAATTAAGAAAAATGGGAGAAGCAAGGGATGA
ATGTACAATATGTTTATTTGATGTTGATGGTACATTAACCATGCCAAGAC
AGGTAATCCTTTTCAATTGAAAAAATATTATGTAATTTTTTTTTAAAGAT
TGTCATTGTCTCCAAATCATGTTATTTTGTATATGAAATTTTCTTGAATT
GAATTTAGGTCATTACATCAGATATGGAGGATTTTATAAAAGAGCTTCAA
AAGAAAGTGTTGGTTGGTATAGTGGGTGGTTCTGATCTCAAGAAAATTAA
AGAACAAATGGCTGGAGAACATTGTAAGAATTGCTATGTAATTCAATTTC
TCTTTTATTTGAGACATAGCGGACAGTATTTCAGTATTCAAAAACTTTTC
TTCCAACTGTTCCACATAATATTGTAATAGTTGTTTGGGAGAATGTGACA
GTCTTTTGATTAACTAATTACTCCAGCATAAATTTTGTTAATAATAACAT
CATATAATTGATTTGTCTTTTACGAATCAGCTGTTACTTAGGGACAAAAT
AATTTATCTCGTTTGTACTGGCTGAGGAAAAGTAATGTATGCTTGAGTAC
CTTAAGTGGATAAATTTTGGCATAGATTTAATTTGGCGATTGGCCAAAAT
ACGATTTTTGGTGGGGATTTAATTTGGCGATAGATCAATTTCTTAAAATT
TGGAGGGGATTCAATTTGGCGAATTGCCGAATTTGGAAATTTTGGCGAGC
AAAATTCGGCAAATTTAATTCCCGCCAAAATTTATCCACTTAAGGTAATT
TGTTTATAGACCGTTGCATTCTCCTAAATAACTATTCAATTGCATGAATT
TTTTTCGTAAGCAGTTCTTAAAAAAATCTGTCAAATTTTATAAAAGAAGC
TTTCGTTAACTCTGGAATAATGAGATAATGACTATTTAAAATTTTCAATA
ATATATTCAGAACTCTAATGATCTTCTGGGAACCAGAATTCATCATNCTG
TCAAAATTTTATAAAATAAGCTTTCGTTAACTCTGGAATAATGAGATAAT
GACTATTTAAAATTTTCAATAATTTATTCAGAACTCTAATGATCTTCTGA
GAACCAGAATTCATCACAATACTCAATATCAATCATCATAGTGAATATGG
CTTTTAGGAATAACAACTTGCACAGCTCAGGGTCATCCGTATAGTACTCT
TAGGTGCCAAATAAACGGGGGGGGGGTTGGAAAATTTTCGAAATTTTAAT
AAATTGGCTAATTGCCAGGGGGTTGGAAATCGTACTTCTGAAACCCCAAA
AATAAGGTAAATATAGGCTAAAATCAGACTATTAAGAGTAAAATAAGGGG
CCTTCTCTTTGACAGCTGAGAATATTCTTAAAAATTAATTCTAAACCCTC
TTTCCCACCTTCACTGCATTCATACTATATGGATGACCCCCTTAGGAAAT
AACTTATCTATTTTTTCTAGGTATAAAGATATTTGATTATGTGTTTGCAG
AAAATGGATTAGTAGCTTACAAAAATGGTGAACTACTTGAAATACAGGTA
ATTCTAAAGAATTTCTAATAGAAAACATGGAAGATAACAGGCTTGTGTAT
ATGGCATGCACCAAAATGCATAATAGAATGTAGATACAGTATAGGAAATG
ACTGGTTATTAACTAATTTCTCAAAATAGCTAAACATTTGATTTTATTAA
ATTAATGATTTATAAAAACTACTTTCTATAACGCTGATCACATGTTCATG
CAGACAAAATTTTGGACCTGTAACCCCTGGATTCTGGGGGGATGAGGATT
TTCCGATTTTTTAAAAAAGGTGGAGGTTGGGTTGATGAGAGATTTCAGGT
GGGGGTAACCCTATGTAGGGTGAGTGACGTTTTTCAGGTAGGGGGTTGGA
GGTGTGCTGCCCACTATGTATAATAAGTTACACAAGTGCAAAGAAATATT
GTTGATATTACTCATGTGTCATTTACCTTTGGAAAGATAAAGGAAATTAA
ATCATTTGAGTAGGGATTTGAAATTGAACGCATTATATAGGCTTGAAAAA
AGTTGTTATTAATCTCAAAGGGCAATCCTAGGGCAATATCATCAATGTTC
AAAAAAATTATGCCCCATTTTTTTATCACTAGTCATTGCTTTCACTAAAT
GCCCCCACATAAAGATCATGTCAAGCACTTATGAAGCTTTAATGCATTAA
AGATTAAAACATTAATANGATCATGTCAAGCACTTATAAAGCTTTAATGC
ATTAAAGATTAAAACAAAAACATTCAAAAATAATCAGGAATAATTGATTG
ATTTAATTATTGATTGATTGGTTGATTGATTGATTGATTGATTGAGGCAT
TTGTTTGAAGAAAAAAATTATATTCCATTAACAAAATACTTGAAGAATTT
GCAGCTTGATAATTTAATAAAATTTAAGGAAAAGCTGGAAAAGCTTCTCA
AAAATATATTTCNNNNNNNNNNNNNNTCATTAGCTTACAGGTTTTCACAT
CTCCTGTTTGTTTTTTTCTCCTAGTTTCTTTCTTACAACAATATATATCG
TGATTATTATTCACTAAATAGACCTTTTTTATAATGCCGCAGACATCTTA
GATTGTAGGCAAAATATATGGTGGTGAATAAATCAACAAGGTAACCAATC
AGAAATAGCTTGTTTTTTTCATTGCCTGCTATATTTCAACAATTCTCTAT
TGCAACTTTGCCTAATAAACAATAGTCAAGAGGATACTGCGTATGAAATT
TATCAAAAAGTTCTGCACCATCTTAAATAGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTTCATGATGCAATCTTTTCTCCAAGCAGCGCAGACAAT
GAAGAGATGTGCCTTCAGGAAGCTAGACTTTTTGAGTTTATAGCTATATA
TACTTTCGCTTTATTGTGTTTCTGTATGACTGTCTGTGTACCTAGTCTAA
CCAGTGTTAAATGCCTTCGAGAAGGTCCATCCTAACTTGGAAAGCCAGAA
TTGGAGCTATTTCACCAAACCACTGGAGCGTAAGTTATTTAGGCTATCAC
AACTGCATGAAAAAGTTGAATGTGCGCATGTAATTAAAGTTAAACGAAAA
TGTAAACAAACTTTTTGCAGGTTTTTGAAATAGATTTACCACACTGAAAA
AACAGTGAAAAAACTCTATGTGAGGTAAATCTATTTTGAAGACCAAAAGA
AAAAGTTTGTTTACATTGATTGACATTCAACATTCATTCAACCACTTTTG
GATTCAACTTATTATATATGCGTACATCATTCAACTTTTTTGTACTTTGC
CGGTATCTTGTTTTACTAAGTTAAGAAGGACTTTCTCGAGTTACGACCAT
ATGATGGTATTTAAAGCTCAAGAAGCTCTATAAACAATAAAGGTAGTTAT
TGATAAAATAAAAGACAAAGATACCGTAATTAGAGTTAACAAAAATATCA
AATATACATATGAAAACTTGAGCAAAAAAAACAAATTTCTTTTCCGGAAA
AAAGAATTGAAATCATTGCTGAAGTGAACTTCTGACTAAATTACAGTAGT
TAGTATTCAGTTTCAAAGACAAGAAACAAAATTTGACATACAAAAAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTGTTATATCATACACTGT
TATGATTTGCATTTATAACACTCGCTTCAGTTTTTCAAAGCTAAATCAAA
ACTAAAATTGTAATATGTAATAATGGTAATAACATATAACGTTTTTCCGT
CCCGGAAAAAAACCGAGCATTTACGGAAAAGACTAACTACGGGGATGCTT
GGGCGACAAAACGCAACAAAATTTCAAGATTCCAGTCCAATATCTATGCG
TGAAACTATGAGTGCCTCCTCGTCGCTACGCTCCTGCGGGGGCAATAATT
CCATTTAATCTTTTTTTTTCTACTTGTAGAATTTCAGACTAAATAATGCT
TAGAAAGAGCAAAAGATCTTGTAAATGAATCGGTGTTCTCTTTTCGGTGT
CTGATAAAAACGTGTAGACTGAGGCCCCCCAGCGGACCCTCAATTCACGC
AATCACGCAATTTTTTTTCAAAATTCACGCATACACGCAAATTTTTCTCG
AGTTTCACGCAATAACCCAATTTTTCAGTAAATCGGAAAATTTTCGGGAA
AAATCGGGGAAACATTGGAAAATCGGGAACACTGCACACAATCAGTGGAT
AAAAGGGAAAGTTCACGTATTCACGCACAAAATAGCCCAGATTCACACAT
TCACGCAGTCAAAAAGTGGATTTTCACGTTCACGCGAGTTTTTTTCAATT
CACGCATTCACGCATTTTTTTCTTCTCAATTTTCACGCATTCACGCAACC
GAAAATGCCCATTCACGCATTCACGCAAACCGCTGGGGGGGCCCCTAGAC
TCTAGTCCTCTAGCCTACCTCTTCTAAGTGATAGAGTATGAAAACAGTTG
GCAGTTAAAATCTAAACTAGAGCTTGTTCTTTTTGTTCATTTCAGAACCT
CTCAAAGTATGTTGGTGACGATAAACTTCAAGAATTCATCAATTATTGTT
TAGAATATATGTCAACATTGAAAATACCACGAAAAAGGTAAAATTGCAGC
AAAAAAATTTTAAGGTCTATACCCAGCTGACACACAACGTTGTTTCCACG
TTCATCTAAAGTTATATGGATGTTGTGAACGTTAGATGAACATCGAAACA
GCGTTGTGTTTCAGCTGGGTAATATCCTAAGGTCCATAAGAGAGTCGAAG
AGAATACGTAGCTTCTCAATATCAAGATACAATTAATCTTAGATATCGTA
AGGCTGAAGTTGAATTTGAAATGGAATTATATATAATTGCCAGTAAAATT
TAAGGCAATATCATTAATGTGTCTGCACAGTGGCCTGCGAATTAGTAAGA
TTATATTATTTAAAATCATACATAATATGCTTAACATTTTTAGGGGAACC
TTTGTAGAATTTCGCAATGGGATGTTGAATATTTGTCCTGTTGGTAGAAG
TTGTAGTCAAGAAGAAAGAATTGAATTCAATAAATATGACCAGGTAATAC
GAGGAAAATAAAAGAATTTTATATTACCGTTAGTTGTTTTTTTTAGGTGA
TTGATAGAAGAAAAGCTGCAATACCTCAAAATTTCATGATCAAAATTTAA
GGTTTTTTCAGCATCAATAAATTTCAAAGGGAACCCCCTAGAGAAGGATG
CTTTTTTCCATGGAATTGAATAGCCTGGTTAATCAAGCTCAAACTCGCTT
TGCTAAGAAGTAACCTTGAGTTATTGAGTTCTCAGAAATTCTCCAGCAAA
CCAGTATGATTGACATTCCATCTTTTCTTACTAGGAACACAATATACGTA
AAAACTTCGTGGCAGCTTTGGAAAAACGATTTCCTGATTCAGGGCTGAAA
TATTCAATTGGTGGACAAATCAGTTTCGATGTGTTCCCAAAGGGTTGGGA
TAAAACATACTGTTTACGTTTCATTGATACAAGTAAAATCAAAACGATTC
ATTTCTTTGGCGATAAAACGTGGGAGGTATGTGTTGTTTTAATACATTTG
TTTTCAGCAATGTTCGATTCTAAATCGTATAATTATTTAGGCTACGTCTA
GGCTGCACGCATCCCCAGAATTTATTTTGTTATAGGGGATGCGTATCGTG
TATGAAATTCTCGTCCGAGAGTTACCTCAAATTTGGGGTAACCGAAAGTT
GCATAAATTTACATAATTTTGTTACATCCAATCACAGAAAGAGAAAAATG
ACGTCATTGTGCTATTGCTTTCATAATTATAAATTTTCATTCATTAAACA
AAGAGAAGTCGTTGTACAGCTGTGACACATAATCAAAAAAGAGAAAAGAA
AAGACGGGGGTAAGCTGGGACAGGAATATCTTAGACGATACGCATCCCCT
ATATCAAATCATATCAGAGGGGATGTGTGCAGCCTAGGCTACGTCATATC
TTCCTCCGTTTTGAGCGTAAAACTCCTACTCAAGAGTAAGGCCTAAAAGA
CTGGAGCTGTCTATTGTGTAGACTAATGATTTTATGTTTATGTCTCAGGA
AAAACAGTTTTTTAAAAAGTTTTGAAACTTTTCGTTTTGTTGAAGGAGAA
TTCCACGATCCTGAAAAATTTTTTTAGTAACGTTTAACGTAAACGTACCA
CGTGACAGCTGGAAAGAGACATAAATATTTTGAATTACAATTTATTTACG
CCCTTTATGTTTCACTTTGATGACCCACACTTTAAGATACCTATATTAAC
TTTATCATATGATTCTGCTCATGTTTCAGGGTGGCAATGATTTCGAAATT
TTCGCTGACAAACGTACGCTAGGCCACACTGTCACAAGTCCAGAAGATAC
GAAAAAGCAGTTAACTGAACTCTTTTTCAAGTAGAAAATCTATTAATATA
TTCTCTAGTTGGTCTATTTATAAGAATATTAGACCTGTTCTTATTTTTTT
TCGTGAGCTGCAATATTAGCCATTTTAAAATGGCCTGGAATTCCCGAGTT
ATTTTTTTCCGAGTTATTTTGCACGTGATGTCACAATTTCAGTTTTTATG
AAGTCACCA

Coding sequence (CDS) from alignment at scaffold_166:131778..138886-

>TCONS_00049801 ID=TCONS_00049801|Name=TCONS_00049801|organism=Clytia hemisphaerica|type=CDS|length=5817bp|location=Sequence derived from alignment at scaffold_166:131778..138886- (Clytia hemisphaerica)
GGTGGCAATGATTTCGAAATTTTCGCTGACAAACGTACGCTAGGCCACAC
TGTCACAAGTCCAGAAGATACGAAAAAGCAGTTAACTGAACTCTTTTTCA
AGTAGGAACACAATATACGTAAAAACTTCGTGGCAGCTTTGGAAAAACGA
TTTCCTGATTCAGGGCTGAAATATTCAATTGGTGGACAAATCAGTTTCGA
TGTGTTCCCAAAGGGTTGGGATAAAACATACTGTTTACGTTTCATTGATA
CAAGTAAAATCAAAACGATTCATTTCTTTGGCGATAAAACGTGGGAGGGG
AACCTTTGTAGAATTTCGCAATGGGATGTTGAATATTTGTCCTGTTGGTA
GAAGTTGTAGTCAAGAAGAAAGAATTGAATTCAATAAATATGACCAGAAC
CTCTCAAAGTATGTTGGTGACGATAAACTTCAAGAATTCATCAATTATTG
TTTAGAATATATGTCAACATTGAAAATACCACGAAAAAGGTATAAAGATA
TTTGATTATGTGTTTGCAGAAAATGGATTAGTAGCTTACAAAAATGGTGA
ACTACTTGAAATACAGGTCATTACATCAGATATGGAGGATTTTATAAAAG
AGCTTCAAAAGAAAGTGTTGGTTGGTATAGTGGGTGGTTCTGATCTCAAG
AAAATTAAAGAACAAATGGCTGGAGAACATTTTGTTATTCAATAGACGTC
ATGTTCCCCTAAGTCCCCAAGTCATTCCTTTTTGTTTAGATCTTGAAAAA
TTAAGAAAAATGGGAGAAGCAAGGGATGAATGTACAATATGTTTATTTGA
TGTTGATGGTACATTAACCATGCCAAGACAGGGTGGCAATGATTTCGAAA
TTTTCGCTGACAAACGTACGCTAGGCCACACTGTCACAAGTCCAGAAGAT
ACGAAAAAGCAGTTAACTGAACTCTTTTTCAAGTAGGAACACAATATACG
TAAAAACTTCGTGGCAGCTTTGGAAAAACGATTTCCTGATTCAGGGCTGA
AATATTCAATTGGTGGACAAATCAGTTTCGATGTGTTCCCAAAGGGTTGG
GATAAAACATACTGTTTACGTTTCATTGATACAAGTAAAATCAAAACGAT
TCATTTCTTTGGCGATAAAACGTGGGAGGGGAACCTTTGTAGAATTTCGC
AATGGGATGTTGAATATTTGTCCTGTTGGTAGAAGTTGTAGTCAAGAAGA
AAGAATTGAATTCAATAAATATGACCAGAACCTCTCAAAGTATGTTGGTG
ACGATAAACTTCAAGAATTCATCAATTATTGTTTAGAATATATGTCAACA
TTGAAAATACCACGAAAAAGGTATAAAGATATTTGATTATGTGTTTGCAG
AAAATGGATTAGTAGCTTACAAAAATGGTGAACTACTTGAAATACAGGTC
ATTACATCAGATATGGAGGATTTTATAAAAGAGCTTCAAAAGAAAGTGTT
GGTTGGTATAGTGGGTGGTTCTGATCTCAAGAAAATTAAAGAACAAATGG
CTGGAGAACATTTTGTTATTCAATAGACGTCATGTTCCCCTAAGTCCCCA
AGTCATTCCTTTTTGTTTAGATCTTGAAAAATTAAGAAAAATGGGAGAAG
CAAGGGATGAATGTACAATATGTTTATTTGATGTTGATGGTACATTAACC
ATGCCAAGACAGGGTGGCAATGATTTCGAAATTTTCGCTGACAAACGTAC
GCTAGGCCACACTGTCACAAGTCCAGAAGATACGAAAAAGCAGTTAACTG
AACTCTTTTTCAAGTAGGAACACAATATACGTAAAAACTTCGTGGCAGCT
TTGGAAAAACGATTTCCTGATTCAGGGCTGAAATATTCAATTGGTGGACA
AATCAGTTTCGATGTGTTCCCAAAGGGTTGGGATAAAACATACTGTTTAC
GTTTCATTGATACAAGTAAAATCAAAACGATTCATTTCTTTGGCGATAAA
ACGTGGGAGGGGAACCTTTGTAGAATTTCGCAATGGGATGTTGAATATTT
GTCCTGTTGGTAGAAGTTGTAGTCAAGAAGAAAGAATTGAATTCAATAAA
TATGACCAGAACCTCTCAAAGTATGTTGGTGACGATAAACTTCAAGAATT
CATCAATTATTGTTTAGAATATATGTCAACATTGAAAATACCACGAAAAA
GGTATAAAGATATTTGATTATGTGTTTGCAGAAAATGGATTAGTAGCTTA
CAAAAATGGTGAACTACTTGAAATACAGGTCATTACATCAGATATGGAGG
ATTTTATAAAAGAGCTTCAAAAGAAAGTGTTGGTTGGTATAGTGGGTGGT
TCTGATCTCAAGAAAATTAAAGAACAAATGGCTGGAGAACATTTTGTTAT
TCAATAGACGTCATGTTCCCCTAAGTCCCCAAGTCATTCCTTTTTGTTTA
GATCTTGAAAAATTAAGAAAAATGGGAGAAGCAAGGGATGAATGTACAAT
ATGTTTATTTGATGTTGATGGTACATTAACCATGCCAAGACAGGGTGGCA
ATGATTTCGAAATTTTCGCTGACAAACGTACGCTAGGCCACACTGTCACA
AGTCCAGAAGATACGAAAAAGCAGTTAACTGAACTCTTTTTCAAGTAGGA
ACACAATATACGTAAAAACTTCGTGGCAGCTTTGGAAAAACGATTTCCTG
ATTCAGGGCTGAAATATTCAATTGGTGGACAAATCAGTTTCGATGTGTTC
CCAAAGGGTTGGGATAAAACATACTGTTTACGTTTCATTGATACAAGTAA
AATCAAAACGATTCATTTCTTTGGCGATAAAACGTGGGAGGGGAACCTTT
GTAGAATTTCGCAATGGGATGTTGAATATTTGTCCTGTTGGTAGAAGTTG
TAGTCAAGAAGAAAGAATTGAATTCAATAAATATGACCAGAACCTCTCAA
AGTATGTTGGTGACGATAAACTTCAAGAATTCATCAATTATTGTTTAGAA
TATATGTCAACATTGAAAATACCACGAAAAAGGTATAAAGATATTTGATT
ATGTGTTTGCAGAAAATGGATTAGTAGCTTACAAAAATGGTGAACTACTT
GAAATACAGGTCATTACATCAGATATGGAGGATTTTATAAAAGAGCTTCA
AAAGAAAGTGTTGGTTGGTATAGTGGGTGGTTCTGATCTCAAGAAAATTA
AAGAACAAATGGCTGGAGAACATTTTGTTATTCAATAGACGTCATGTTCC
CCTAAGTCCCCAAGTCATTCCTTTTTGTTTAGATCTTGAAAAATTAAGAA
AAATGGGAGAAGCAAGGGATGAATGTACAATATGTTTATTTGATGTTGAT
GGTACATTAACCATGCCAAGACAGGGTGGCAATGATTTCGAAATTTTCGC
TGACAAACGTACGCTAGGCCACACTGTCACAAGTCCAGAAGATACGAAAA
AGCAGTTAACTGAACTCTTTTTCAAGTAGGAACACAATATACGTAAAAAC
TTCGTGGCAGCTTTGGAAAAACGATTTCCTGATTCAGGGCTGAAATATTC
AATTGGTGGACAAATCAGTTTCGATGTGTTCCCAAAGGGTTGGGATAAAA
CATACTGTTTACGTTTCATTGATACAAGTAAAATCAAAACGATTCATTTC
TTTGGCGATAAAACGTGGGAGGGGAACCTTTGTAGAATTTCGCAATGGGA
TGTTGAATATTTGTCCTGTTGGTAGAAGTTGTAGTCAAGAAGAAAGAATT
GAATTCAATAAATATGACCAGAACCTCTCAAAGTATGTTGGTGACGATAA
ACTTCAAGAATTCATCAATTATTGTTTAGAATATATGTCAACATTGAAAA
TACCACGAAAAAGGTATAAAGATATTTGATTATGTGTTTGCAGAAAATGG
ATTAGTAGCTTACAAAAATGGTGAACTACTTGAAATACAGGTCATTACAT
CAGATATGGAGGATTTTATAAAAGAGCTTCAAAAGAAAGTGTTGGTTGGT
ATAGTGGGTGGTTCTGATCTCAAGAAAATTAAAGAACAAATGGCTGGAGA
ACATTTTGTTATTCAATAGACGTCATGTTCCCCTAAGTCCCCAAGTCATT
CCTTTTTGTTTAGATCTTGAAAAATTAAGAAAAATGGGAGAAGCAAGGGA
TGAATGTACAATATGTTTATTTGATGTTGATGGTACATTAACCATGCCAA
GACAGGGTGGCAATGATTTCGAAATTTTCGCTGACAAACGTACGCTAGGC
CACACTGTCACAAGTCCAGAAGATACGAAAAAGCAGTTAACTGAACTCTT
TTTCAAGTAGGAACACAATATACGTAAAAACTTCGTGGCAGCTTTGGAAA
AACGATTTCCTGATTCAGGGCTGAAATATTCAATTGGTGGACAAATCAGT
TTCGATGTGTTCCCAAAGGGTTGGGATAAAACATACTGTTTACGTTTCAT
TGATACAAGTAAAATCAAAACGATTCATTTCTTTGGCGATAAAACGTGGG
AGGGGAACCTTTGTAGAATTTCGCAATGGGATGTTGAATATTTGTCCTGT
TGGTAGAAGTTGTAGTCAAGAAGAAAGAATTGAATTCAATAAATATGACC
AGAACCTCTCAAAGTATGTTGGTGACGATAAACTTCAAGAATTCATCAAT
TATTGTTTAGAATATATGTCAACATTGAAAATACCACGAAAAAGGTATAA
AGATATTTGATTATGTGTTTGCAGAAAATGGATTAGTAGCTTACAAAAAT
GGTGAACTACTTGAAATACAGGTCATTACATCAGATATGGAGGATTTTAT
AAAAGAGCTTCAAAAGAAAGTGTTGGTTGGTATAGTGGGTGGTTCTGATC
TCAAGAAAATTAAAGAACAAATGGCTGGAGAACATTTTGTTATTCAATAG
ACGTCATGTTCCCCTAAGTCCCCAAGTCATTCCTTTTTGTTTAGATCTTG
AAAAATTAAGAAAAATGGGAGAAGCAAGGGATGAATGTACAATATGTTTA
TTTGATGTTGATGGTACATTAACCATGCCAAGACAGGGTGGCAATGATTT
CGAAATTTTCGCTGACAAACGTACGCTAGGCCACACTGTCACAAGTCCAG
AAGATACGAAAAAGCAGTTAACTGAACTCTTTTTCAAGTAGGAACACAAT
ATACGTAAAAACTTCGTGGCAGCTTTGGAAAAACGATTTCCTGATTCAGG
GCTGAAATATTCAATTGGTGGACAAATCAGTTTCGATGTGTTCCCAAAGG
GTTGGGATAAAACATACTGTTTACGTTTCATTGATACAAGTAAAATCAAA
ACGATTCATTTCTTTGGCGATAAAACGTGGGAGGGGAACCTTTGTAGAAT
TTCGCAATGGGATGTTGAATATTTGTCCTGTTGGTAGAAGTTGTAGTCAA
GAAGAAAGAATTGAATTCAATAAATATGACCAGAACCTCTCAAAGTATGT
TGGTGACGATAAACTTCAAGAATTCATCAATTATTGTTTAGAATATATGT
CAACATTGAAAATACCACGAAAAAGGTATAAAGATATTTGATTATGTGTT
TGCAGAAAATGGATTAGTAGCTTACAAAAATGGTGAACTACTTGAAATAC
AGGTCATTACATCAGATATGGAGGATTTTATAAAAGAGCTTCAAAAGAAA
GTGTTGGTTGGTATAGTGGGTGGTTCTGATCTCAAGAAAATTAAAGAACA
AATGGCTGGAGAACATTTTGTTATTCAATAGACGTCATGTTCCCCTAAGT
CCCCAAGTCATTCCTTTTTGTTTAGATCTTGAAAAATTAAGAAAAATGGG
AGAAGCAAGGGATGAATGTACAATATGTTTATTTGATGTTGATGGTACAT
TAACCATGCCAAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031570XLOC_031570Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049801-proteinTCONS_00049801-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049801-exon-scaffold_166-1575043694:138735..138886TCONS_00049801-exon-scaffold_166-1575043694:138735..138886Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1575043694:138514..138628TCONS_00049801-exon-scaffold_166-1575043694:138514..138628Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1575043694:137290..137366TCONS_00049801-exon-scaffold_166-1575043694:137290..137366Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1575043694:133750..133841TCONS_00049801-exon-scaffold_166-1575043694:133750..133841Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1575043694:133294..133393TCONS_00049801-exon-scaffold_166-1575043694:133294..133393Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1575043694:132811..133002TCONS_00049801-exon-scaffold_166-1575043694:132811..133002Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1575043694:131778..132057TCONS_00049801-exon-scaffold_166-1575043694:131778..132057Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1510915933:138735..138886TCONS_00049801-exon-scaffold_166-1510915933:138735..138886Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1510915933:138514..138628TCONS_00049801-exon-scaffold_166-1510915933:138514..138628Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1510915933:137290..137366TCONS_00049801-exon-scaffold_166-1510915933:137290..137366Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1510915933:133750..133841TCONS_00049801-exon-scaffold_166-1510915933:133750..133841Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1510915933:133294..133393TCONS_00049801-exon-scaffold_166-1510915933:133294..133393Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1510915933:132811..133002TCONS_00049801-exon-scaffold_166-1510915933:132811..133002Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1510915933:131778..132057TCONS_00049801-exon-scaffold_166-1510915933:131778..132057Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1491911889:138735..138886TCONS_00049801-exon-scaffold_166-1491911889:138735..138886Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1491911889:138514..138628TCONS_00049801-exon-scaffold_166-1491911889:138514..138628Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1491911889:137290..137366TCONS_00049801-exon-scaffold_166-1491911889:137290..137366Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1491911889:133750..133841TCONS_00049801-exon-scaffold_166-1491911889:133750..133841Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1491911889:133294..133393TCONS_00049801-exon-scaffold_166-1491911889:133294..133393Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1491911889:132811..133002TCONS_00049801-exon-scaffold_166-1491911889:132811..133002Clytia hemisphaericaexon
TCONS_00049801-exon-scaffold_166-1491911889:131778..132057TCONS_00049801-exon-scaffold_166-1491911889:131778..132057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:131778..138886 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.7122	77.2465	57.0118	56.4658	21.6764	16.1353	79.3505	84.3878	34.611	34.297	23.6176	14.165	10.8673	8.49505	14.422	16.9111	32.1663	30.6462	8.63779	12.4469	19.4048	16.8988	29.3249	31.752	28.6516	34.1654	16.8042	10.7214	22.2269	20.6874
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006379HAD-SF_hydro_IIB
IPR005002PMM
IPR023214HAD-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004615phosphomannomutase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0009298GDP-mannose biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009298 GDP-mannose biosynthetic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004615 phosphomannomutase activity
Blast
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BLAST of TCONS_00049801 vs. Swiss-Prot (Human)
Match: PMM2 (Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.470e-105
Identity = 144/241 (59.75%), Postives = 193/241 (80.08%), Query Frame = 3 
Query:  105 TICLFDVDGTLTMPRQVITSDMEDFIKELQKKVLVGIVGGSDLKKIKEQMAGEHCIKIFDYVFAENGLVAYKNGELLEIQNLSKYVGDDKLQEFINYCLEYMSTLKIPRKRGTFVEFRNGMLNICPVGRSCSQEERIEFNKYDQEHNIRKNFVAALEKRFPDSGLKYSIGGQISFDVFPKGWDKTYCLRFIDTSKIKTIHFFGDKTWEGGNDFEIFADKRTLGHTVTSPEDTKKQLTELFF 827
             +CLFDVDGTLT PRQ IT +M+DF+++L++K+ +G+VGGSD +K++EQ+ G   ++ +DYVF ENGLVAYK+G+LL  QN+  ++G+  +Q+ INYCL Y++ +K+P+KRGTF+EFRNGMLN+ P+GRSCSQEERIEF + D++ NIR+ FVA L K F   GL +SIGGQISFDVFP GWDK YCLR ++    KTI+FFGDKT  GGND EIF D RT+G++VT+PEDT++ + EL F
Sbjct:    7 ALCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGGSDFEKVQEQL-GNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTAPEDTRR-ICELLF 245
The following BLAST results are available for this feature:
BLAST of TCONS_00049801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PMM21.470e-10559.75Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 ... [more]
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