|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049754 ID=TCONS_00049754|Name=TCONS_00049754|organism=Clytia hemisphaerica|type=transcript|length=4222bpRun BLAST on NCBI protein sequence of TCONS_00049754-protein >TCONS_00049754-protein ID=TCONS_00049754-protein|Name=TCONS_00049754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=684bp MKVISCCYKTSGRRRSSKMVDTTSSNKNDILNTLKRRGALKEPKLFIVMQRun BLAST on NCBI transcript from alignment at scaffold_166:164116..201016+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049754 ID=TCONS_00049754|Name=TCONS_00049754|organism=Clytia hemisphaerica|type=transcript|length=36901bp|location=Sequence derived from alignment at scaffold_166:164116..201016+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_166:164116..201016+ >TCONS_00049754 ID=TCONS_00049754|Name=TCONS_00049754|organism=Clytia hemisphaerica|type=CDS|length=36990bp|location=Sequence derived from alignment at scaffold_166:164116..201016+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049754 vs. Swiss-Prot (Human)
Match: KPCA (Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=4) HSP 1 Score: 848.195 bits (2190), Expect = 0.000e+0 Identity = 421/680 (61.91%), Postives = 515/680 (75.74%), Query Frame = 3
Query: 132 DTTSSNKNDILNTLKRRGALKEPKLFIVMQHKFIPHYFKEPTYCAHCKSFIWGVVGNNGYQCKVCSFGVHKRCHEYVSFKCPGADTGPD-DAPQNPHRFKVHTYGSPTFCDHCGTLLYGLFKQGLKCQACDMNVHKRCEQSGCIPKLCGADHTEKRGRIQVKIFFEPKAKDEGRLTVQIKEAKNLIPMDPTGMSDPYVKIKLQP-----HXXXXXXXXXNLNPTWGETFSFDITPAEKDKRLSVEVWDYDFATSNDFMGSMSFGISELLKEPIEGWFKLLNQEEGEFYNVPIQ--DDAAVAALAKKFQ----------FMSPSERDNIQAXXXXXXXXXXEVISDMERFKLEDFTFLKVIGKGSFGKVMLAEKKGSDRVYAIKILKKDVVLQNDDLECVMTEKRVLALQGKPPFLTALQSCFTTQDRLYFVMEFVNGGDLMFHIQQVGKFKEPQAVFYAAEIVEGLLFLHKRGIIYRDLKLDNVLLDQSGHIKIADFGMCKENIFAPKTTRTFCGTPDYIAPEIIAYQPYGASVDWWALGVLIYEMLAGQPPFDGEDEDELFNSVLEQTVSFPRSLSREAISIIKGFLTKNPSRRLGSGETGEQDIRDHQFFKYIDWVKLYKMEIQPPYKPKVKSKRSHDNFDPEFTEEATRLTPIDRNFIQHVDQRVFENFSYINNTFV 2117
D+T+S D+ N R+GAL++ + V HKFI +FK+PT+C+HC FIWG G G+QC+VC F VHKRCHE+V+F CPGAD GPD D P++ H+FK+HTYGSPTFCDHCG+LLYGL QG+KC CDMNVHK+C + +P LCG DHTEKRGRI + + + DE +L V +++AKNLIPMDP G+SDPYVK+KL P K+KTK ++ LNP W E+F+F + P++KD+RLSVE+WD+D T NDFMGS+SFG+SEL+K P GW+KLLNQEEGE+YNVPI D+ L +KF+ +SPSE D Q ++++R KL DF FL V+GKGSFGKVMLA++KG++ +YAIKILKKDVV+Q+DD+EC M EKRVLAL KPPFLT L SCF T DRLYFVME+VNGGDLM+HIQQVGKFKEPQAVFYAAEI GL FLHKRGIIYRDLKLDNV+LD GHIKIADFGMCKE++ TTRTFCGTPDYIAPEIIAYQPYG SVDWWA GVL+YEMLAGQPPFDGEDEDELF S++E VS+P+SLS+EA+S+ KG +TK+P++RLG G GE+D+R+H FF+ IDW KL EIQPP+KPKV K + +NFD FT LTP D+ I ++DQ FE FSY+N FV
Sbjct: 9 DSTASQ--DVANRFARKGALRQKNVHEVKDHKFIARFFKQPTFCSHCTDFIWGF-GKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN--VPSLCGMDHTEKRGRI----YLKAEVADE-KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGEYYNVPIPEGDEEGNMELRQKFEKAKLGPAGNKVISPSE-DRKQPS------------NNLDRVKLTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEKRVLALLDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSVCKGLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKGA-ENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNPQFV 664 The following BLAST results are available for this feature:
BLAST of TCONS_00049754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.