|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049757 ID=TCONS_00049757|Name=TCONS_00049757|organism=Clytia hemisphaerica|type=transcript|length=2262bpRun BLAST on NCBI protein sequence of TCONS_00049757-protein >TCONS_00049757-protein ID=TCONS_00049757-protein|Name=TCONS_00049757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp YEFELDPSTDVHTMMPGNYWLIDQRSLGGKPGSVSLKKDKQNLIGISIGGRun BLAST on NCBI transcript from alignment at scaffold_166:211754..220516+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049757 ID=TCONS_00049757|Name=TCONS_00049757|organism=Clytia hemisphaerica|type=transcript|length=8763bp|location=Sequence derived from alignment at scaffold_166:211754..220516+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_166:211754..220516+ >TCONS_00049757 ID=TCONS_00049757|Name=TCONS_00049757|organism=Clytia hemisphaerica|type=CDS|length=16170bp|location=Sequence derived from alignment at scaffold_166:211754..220516+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049757 vs. Swiss-Prot (Human)
Match: PICK1 (PRKCA-binding protein OS=Homo sapiens GN=PICK1 PE=1 SV=2) HSP 1 Score: 501.901 bits (1291), Expect = 6.535e-171 Identity = 237/351 (67.52%), Postives = 286/351 (81.48%), Query Frame = 3
Query: 93 PGSVSLKKDKQNLIGISIGGGAPLCPCLYVVQVFDNTPAAKDGTLQAGDEIVGVNGKSMKGKTKVDVARAIQSQKEIVTIQYVKLHADPKEGKSLDIILKKVKHKMVENISSGTADALGLSRAILCNDGLVKKLEELEQNSFIYKGIVEHSKRLLQSYFQMSNLHKELGDIFASIGVRELQPNASEGFAIFAECHRGFNKSGFDFLKKMKPMLSDLNTYLTKAIPDTKLTIQKYLDAKFEYLSYCLKVKEMDDEEYGYAALHESLYRVETGNYDYRVVLRCRQLARERFAKLRSDVLVKLELLDNKHVQDLVFQLQKMLEAMTTYHNECEDELSKATIFPIEVDLCGGAMA 1145
PG V+L+KD QNLIGISIGGGA CPCLY+VQVFDNTPAA DGT+ AGDEI GVNG+S+KGKTKV+VA+ IQ K VTI Y KL ADPK+G SLDI+LKKVKH++VEN+SSGTADALGLSRAILCNDGLVK+LEELE+ + +YKG+ EH+K LL++++++S H+ GD+F+ IGVRE QP ASE F FA+ HR K G LK +KPML+DLNTYL KAIPDT+LTI+KYLD KFEYLSYCLKVKEMDDEEY AL E LYRV TGNY+YR++LRCRQ AR RF+++R DVL K+ELLD KHVQD+VFQLQ+++ M+ Y+N+C L A +FPIEVDL +A
Sbjct: 20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQGMSLDIVLKKVKHRLVENMSSGTADALGLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHRAFGDVFSVIGVREPQPAASEAFVKFADAHRSIEKFGIRLLKTIKPMLTDLNTYLNKAIPDTRLTIKKYLDVKFEYLSYCLKVKEMDDEEYSCIALGEPLYRVSTGNYEYRLILRCRQEARARFSQMRKDVLEKMELLDQKHVQDIVFQLQRLVSTMSKYYNDCYAVLRDADVFPIEVDLAHTTLA 370 The following BLAST results are available for this feature:
BLAST of TCONS_00049757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.