TCONS_00049758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049758
Unique NameTCONS_00049758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049758 ID=TCONS_00049758|Name=TCONS_00049758|organism=Clytia hemisphaerica|type=transcript|length=631bp
aaaaatgttggaAGTGAAGTTTAATTGGTCATTGGGTGGAAAACCTGGTT
CTGTTTCACTGAAGAAAGATAAACAGAACCTCATTGGTATCAGCATCGGA
GGTGGTGCTCCCTTATGTCCATGTCTTTACGTAGTCCAAGTTTTTGACAA
CACACCAGCTGCCAAAGATGGCACACTTCAAGCTGGAGATGAGATTGTTG
GTGTCAACGGCAAATCCATGAAAGGAAAGACCAAAGTGGATGTCGCTAGA
GCTATTCAATCACAGAAGGAGATTGTGACCATTCAATATGTCAAACTTCA
CGCTGATCCAAAGGAAGGCAAATCACTTGACATTATCTTAAAGAAAGTCA
AGCACAAGATGGTAGAGAATATCAGCTCTGGCACTGCTGATGCCCTTGGA
TTGAGTCGAGCTATTCTTTGCAATGATGGATTGGTGAAAAAGCTAGAAGA
GTTAGAGCAGAACTCGTTCATTTACAAAGgtattgtggAACACAGCAAAC
GTCTGTTACAAAGCTACTTTCAAATGTCGAATCTTCATAAAGaATTGGGA
GACATCTTTGCTTCAATTGGTGTCCGTGAGCTACAACCCAATGCTAGTGA
AGGGTTTGCTATCTTTGCAGAATGCCATCGG
Run BLAST on NCBI

transcript from alignment at scaffold_166:213870..216382+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049758 ID=TCONS_00049758|Name=TCONS_00049758|organism=Clytia hemisphaerica|type=transcript|length=2513bp|location=Sequence derived from alignment at scaffold_166:213870..216382+ (Clytia hemisphaerica)
aaaaatgttggaAGTGAAGTTTAATTGGTAATTTGAATCTTaaatttaac
ttttgttttcaatgaatTTGGATACATACCCACTCTTTCCCACAGCTCTA
CTTGAGTTACCAAGAAAGAATACTAGGCCTAAGAAATTAATGCTTTTTGC
CACTAATCAATAACCCACAAAAAGTATTTTGGTCTGGTTAACGGTTTGAT
GGTTATAAATgtaaaattgtacaaaattcTTTTTCACTGTAAAGAGGAAA
CAGAAACTTTAGAATTTGGTGTGCAATCTTTTAAATCTGATTAAAAATGG
TTAAAGCAGCTATAAGTACTTAGCACTTAGTTCACATCTAAAATATCAAC
AATTGTGGTATCAAATTTTGAGTCACTATTTTCCCATTTCCTCTCCTTTt
cgtatgtttttttttttaatcaatttatACTGATTATAGCTGAGATCATT
AGAAGTCATTAAAAGTGAAATTAATTTGAGTTTTCTTTAAccattttttg
tactttttcaaaagttaatccTGTGTTAGTTAGAAATTTGCCCTGTAAAA
AAAACACACATCACTATAAAAGCGtttatttttaagcaaaatgttTCAGA
ccttattttttagcttttctgtGTCTGTTTTGAGAAGGAGATAAATaagg
taaaatatttttaaattggtcggaccaaaaaattttgttttttataactA
ATGTTTCTACCTCCACATTAGGTCATTGGGTGGAAAACCTGGTTCTGTTT
CACTGAAGAAAGATAAACAGAACCTCATTGGTATCAGCATCGGAGGTGGT
GCTCCCTTATGTCCATGTCTTTACGTAGTCCAAGTTTTTGACAACACACC
AGCTGCCAAAGATGGCACACTTCAAGCTGGAGATGAGATTGTTGGTGTCA
ACGGCAAATCCATGAAAGGAAAGACCAAAGTGGATGTCGCTAGAGCTATT
CAATCACAGAAGGTTTTGTTTGATGAGTTTAGagattttcctttttattt
caCTGTTTAGGtcgtcgttttttttttttttttaattttcattgtttctt
taGGAGATTGTGACCATTCAATATGTCAAACTTCACGCTGATCCAAAGGA
AGGCAAATCACTTGACATTAGTAAGTTCTTATTAGAATAGAAATGTCAAA
TCAACGTCTAtgaagagaaaacaaaaaaggataCAGTGTTTTACCAGGTT
TTCAAAATGCAAGGGATGTTTTTGTGGTCAAATCTATCTCAAATTTacta
tttgcaaattttacttgTAGTAGGGGTCCAAACCTTTTTTGCAAAAGGAG
TCCACTGGTAAGGTCTGACAAAATAAGCTGTAAAGGTAAATCATAGGTAA
ACACCAGGTACAATTTTTGAAAGGcatattcaacaaaaaaagtTGGTACC
ATCGAAAAGAAAATGGAATCTTTTAGCAAAACAGTGAACTACAACAAACT
TCATACAATCATTAAGTTTTAATTTTGTGTAGATCGTAATCGTTTGTACC
TCTCTTATAGTGATTCTGTTTTgagtttcttttctttctgtttCTTTGTT
TACAGTCTTAAAGAAAGTCAAGCACAAGATGGTAGAGAATATCAGCTCTG
GCACTGCTGATGCCCTTGGATTGAGTCGAGCTATTCTTTGCAATGGTTTG
TTTTGTGTTATTAATAATCCCCACTGGTTTTACACAAATACAAAGATACT
GAACTATAGATATTCAAGAGAAGTAAGATTTCCAGAACTTAATGAATAGG
AGCTATGCTCAATATCCTACATAAAACCAATCTGAAAAATTGTAACATTt
gcatgatttcattatttcttattttcttttttcaatactCAGATGGATTG
GTGAAAAAGCTAGAAGAGTTAGAGCAGAACTCGTTCATTTACAAAGGTAA
ATCTGATAACTTTTAAAGACACCCCCCCTGGATGCACACAACTACCTACC
AATAAGTCAATGACAGGTTTTACAGTTGCTTTGGTTCTTGCTTCAAATCA
ATTGGTTTTCATCCATTGGAATTCATCATGTTTTTACTCAACTCTTcaac
tttttaggtattgtggAACACAGCAAACGTCTGTTACAAAGCTACTTTCA
AATGTCGAATCTTCATAAAGGTAATGAAAGTTTTATCAGTGTTCACAGCT
CCCAGACGGAAATAGGGTTTTCTGCATTTGAATtaagtaaaatatttaaa
atctcttCTCTGTGTGGTATGAAAAACCTTGCTTTGTCTCCTGGTTTATG
AATCTGAAATGGTTTCTGCAACCGTTTTTTGTCTCATGATATTTcattta
aactaaaattttttagaatattttcttGCCCAAGCACACAAAAATGAGTT
GCGTAAAAGTGGTTTTGGAACCAGTTTTCAAAGGATTTAATGACAACAAA
ATgaactcttttttttcttcatagaATTGGGAGACATCTTTGCTTCAATT
GGTGTCCGTGAGCTACAACCCAATGCTAGTGAAGGGTTTGCTATCTTTGC
AGAATGCCATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031551XLOC_031551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049758-exon-scaffold_166-1491911889:213870..213896TCONS_00049758-exon-scaffold_166-1491911889:213870..213896Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1510915933:213870..213896TCONS_00049758-exon-scaffold_166-1510915933:213870..213896Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1575043694:213870..213896TCONS_00049758-exon-scaffold_166-1575043694:213870..213896Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1491911889:214591..214831TCONS_00049758-exon-scaffold_166-1491911889:214591..214831Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1510915933:214591..214831TCONS_00049758-exon-scaffold_166-1510915933:214591..214831Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1575043694:214591..214831TCONS_00049758-exon-scaffold_166-1575043694:214591..214831Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1491911889:214923..214989TCONS_00049758-exon-scaffold_166-1491911889:214923..214989Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1510915933:214923..214989TCONS_00049758-exon-scaffold_166-1510915933:214923..214989Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1575043694:214923..214989TCONS_00049758-exon-scaffold_166-1575043694:214923..214989Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1491911889:215425..215514TCONS_00049758-exon-scaffold_166-1491911889:215425..215514Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1510915933:215425..215514TCONS_00049758-exon-scaffold_166-1510915933:215425..215514Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1575043694:215425..215514TCONS_00049758-exon-scaffold_166-1575043694:215425..215514Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1491911889:215712..215765TCONS_00049758-exon-scaffold_166-1491911889:215712..215765Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1510915933:215712..215765TCONS_00049758-exon-scaffold_166-1510915933:215712..215765Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1575043694:215712..215765TCONS_00049758-exon-scaffold_166-1575043694:215712..215765Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1491911889:215927..215989TCONS_00049758-exon-scaffold_166-1491911889:215927..215989Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1510915933:215927..215989TCONS_00049758-exon-scaffold_166-1510915933:215927..215989Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1575043694:215927..215989TCONS_00049758-exon-scaffold_166-1575043694:215927..215989Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1491911889:216294..216382TCONS_00049758-exon-scaffold_166-1491911889:216294..216382Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1510915933:216294..216382TCONS_00049758-exon-scaffold_166-1510915933:216294..216382Clytia hemisphaericaexon
TCONS_00049758-exon-scaffold_166-1575043694:216294..216382TCONS_00049758-exon-scaffold_166-1575043694:216294..216382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:213870..216382 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.696	58.2045	22.2053	14.3405	42.9774	37.7506	61.2722	55.9173	51.8809	47.0314	26.0932	32.0331	18.7607	17.1817	21.9984	27.5955	42.4771	42.6974	17.9839	23.0008	30.3803	30.7942	40.1465	39.9961	16.7153	18.2027	34.6131	22.0496	33.6384	29.9452
Blast
[Close]
BLAST of TCONS_00049758 vs. Swiss-Prot (Human)
Match: PICK1 (PRKCA-binding protein OS=Homo sapiens GN=PICK1 PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 1.221e-96
Identity = 136/196 (69.39%), Postives = 165/196 (84.18%), Query Frame = 2 
Query:   44 PGSVSLKKDKQNLIGISIGGGAPLCPCLYVVQVFDNTPAAKDGTLQAGDEIVGVNGKSMKGKTKVDVARAIQSQKEIVTIQYVKLHADPKEGKSLDIILKKVKHKMVENISSGTADALGLSRAILCNDGLVKKLEELEQNSFIYKGIVEHSKRLLQSYFQMSNLHKELGDIFASIGVRELQPNASEGFAIFAECHR 631
            PG V+L+KD QNLIGISIGGGA  CPCLY+VQVFDNTPAA DGT+ AGDEI GVNG+S+KGKTKV+VA+ IQ  K  VTI Y KL ADPK+G SLDI+LKKVKH++VEN+SSGTADALGLSRAILCNDGLVK+LEELE+ + +YKG+ EH+K LL++++++S  H+  GD+F+ IGVRE QP ASE F  FA+ HR
Sbjct:   20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQGMSLDIVLKKVKHRLVENMSSGTADALGLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHRAFGDVFSVIGVREPQPAASEAFVKFADAHR 215
The following BLAST results are available for this feature:
BLAST of TCONS_00049758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PICK11.221e-9669.39PRKCA-binding protein OS=Homo sapiens GN=PICK1 PE=... [more]
back to top