TCONS_00049834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049834
Unique NameTCONS_00049834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049834 ID=TCONS_00049834|Name=TCONS_00049834|organism=Clytia hemisphaerica|type=transcript|length=293bp
AAAAAGCAAAAGGCGTTTCACTCCATCTACAAGCAATTCTACCAACTTTC
AAATCATTGAGCATAAAACCAGATAGACATGCAATTCGCGTTAAAAAACT
CAATAAATCAGCTATAGCCATGTtcgttataaacaaaaaatagccATTGA
AAGGGCTTTTTCGTGACTTTGGAGTAAAGTAGTAAAGGATAGCCGCgttc
aaaatggtagccacGAACAGTAGACTAATGGAAAGAATGCGAAAAATGCC
GATCAAATCCATAATGTCACCTTTCAAGGTCAAAGCtgttgct
Run BLAST on NCBI

transcript from alignment at scaffold_166:239908..240200

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049834 ID=TCONS_00049834|Name=TCONS_00049834|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at scaffold_166:239908..240200 (Clytia hemisphaerica)
agcaacaGCTTTGACCTTGAAAGGTGACATTATGGATTTGATCGGCATTT
TTCGCATTCTTTCCATTAGTCTACTGTTCgtggctaccattttgaacGCG
GCTATCCTTTACTACTTTACTCCAAAGTCACGAAAAAGCCCTTTCAATgg
ctattttttgtttataacgaACATGGCTATAGCTGATTTATTGAGTTTTT
TAACGCGAATTGCATGTCTATCTGGTTTTATGCTCAATGATTTGAAAGTT
GGTAGAATTGCTTGTAGATGGAGTGAAACGCCTTTTGCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031593XLOC_031593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049834-exon-scaffold_166-1491911889:239908..240200TCONS_00049834-exon-scaffold_166-1491911889:239908..240200Clytia hemisphaericaexon
TCONS_00049834-exon-scaffold_166-1510915933:239908..240200TCONS_00049834-exon-scaffold_166-1510915933:239908..240200Clytia hemisphaericaexon
TCONS_00049834-exon-scaffold_166-1575043694:239908..240200TCONS_00049834-exon-scaffold_166-1575043694:239908..240200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:239908..240200 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.842208	0.410643	0.953591	1.86588	0	0	0	0	0	0.439547	1.2799	0.560906	1.12025	0.581696	0.239117	0	0	0.972042	0	0	0	0	0	0	1.80848	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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