TCONS_00049837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049837
Unique NameTCONS_00049837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049837 ID=TCONS_00049837|Name=TCONS_00049837|organism=Clytia hemisphaerica|type=transcript|length=242bp
AAAATAATGTAAATTTCacacaacagaaaaaaaaaattctacaaaaattc
taaaaagtagCTATAAATATTTTAAGGTTAGAATAAATTCAATTTAGtag
tttcagaaaaaacaacaaaaatacgTATTTCTTGAGAttcctaaaaaaaa
aatacttttcaagaaatacattttgaaaaatattaggGTGCAAAAATATA
TGTATCATGTACATAGCTTCATGAAAAAGTATAATATCATAC
Run BLAST on NCBI

transcript from alignment at scaffold_166:250482..250723

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049837 ID=TCONS_00049837|Name=TCONS_00049837|organism=Clytia hemisphaerica|type=transcript|length=242bp|location=Sequence derived from alignment at scaffold_166:250482..250723 (Clytia hemisphaerica)
GTATGATATTATACTTTTTCATGAAGCTATGTACATGATACATATATTTT
TGCACcctaatatttttcaaaatgtatttcttgaaaagtatttttttttt
aggaaTCTCAAGAAATAcgtatttttgttgttttttctgaaactaCTAAA
TTGAATTTATTCTAACCTTAAAATATTTATAGctactttttagaattttt
gtagaattttttttttctgttgtgtGAAATTTACATTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031596XLOC_031596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049837-exon-scaffold_166-1491911889:250482..250723TCONS_00049837-exon-scaffold_166-1491911889:250482..250723Clytia hemisphaericaexon
TCONS_00049837-exon-scaffold_166-1510915933:250482..250723TCONS_00049837-exon-scaffold_166-1510915933:250482..250723Clytia hemisphaericaexon
TCONS_00049837-exon-scaffold_166-1575043694:250482..250723TCONS_00049837-exon-scaffold_166-1575043694:250482..250723Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:250482..250723 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48394	3.39739	1.97235	1.92964	7.04744	1.85633	0	0	2.93585	11.8187	0	1.74022	4.63412	1.20315	4.94575	0	2.61538	4.02103	0	3.87546	4.21059	7.39361	7.98924	7.26338	2.80542	0	7.16577	1.27458	2.90018	1.96988
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top