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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049768 ID=TCONS_00049768|Name=TCONS_00049768|organism=Clytia hemisphaerica|type=transcript|length=3755bpRun BLAST on NCBI protein sequence of TCONS_00049768-protein >TCONS_00049768-protein ID=TCONS_00049768-protein|Name=TCONS_00049768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1234bp QASPETSDKETICYCDHLTDFGGGGPFAEPNPIDFGAALSGFGNIGDNPTRun BLAST on NCBI transcript from alignment at scaffold_166:301475..317149+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049768 ID=TCONS_00049768|Name=TCONS_00049768|organism=Clytia hemisphaerica|type=transcript|length=15675bp|location=Sequence derived from alignment at scaffold_166:301475..317149+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_166:301475..317149+ >TCONS_00049768 ID=TCONS_00049768|Name=TCONS_00049768|organism=Clytia hemisphaerica|type=CDS|length=70395bp|location=Sequence derived from alignment at scaffold_166:301475..317149+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049768 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 248.44 bits (633), Expect = 1.347e-66 Identity = 166/685 (24.23%), Postives = 313/685 (45.69%), Query Frame = 2
Query: 1229 LPHWLVYIGFFTCFVISMVCGFFVMLYGFAFGKVKSDKWIVAMMISFAQSVFLLQPVKVVVLSVAFSLMVKDPTRGDDDDSLAPAXXXXXXXDNAEKIXXXXXXXXXXXXXNITXXXXXLDEFKLPEERKLEEARMARLAEKRVKLILKEIIIHFAFLSLCLMVAYAAADPYSFNLAKATKEAAMENAILKSYKDGKAYNEEVQRVVKNADGVMNRLEWFDWARYSVIDYLFPFGWYNWDTTREFEYKKGFTADTMASKVMAMARFRQLRVKKDSCQKHPVFEHLVEECNAGYSWSVEQQENYSPGWQPDLNKTMRYRARRGKRKALYLGLEDPWRYKTSSELQAFPFMGKFKTYAGGSYAVSIGPTKRIAKKIIESMKENFWVDRYTRAIITEANIYNANTNLLLIATFLHEILPTGGWSHYYNIQSLRLYRYVGGLGQMILLFDIIFVIVTFIGWYKVAKHSRKMGGFKKYLANAWNLLHFIVTFCSTGAIVCTIGRKLFVRWAVENYVAEPEMYTSFATVAQLEYXXXXXXXXXXXXTNLEFLRILRFNRRVGLLTKTVAIIGAPMASFGVLFIVVFMAYVSFAHCVYSDKLEGYSTIMFTFVSLTEMFMGAFDINELVDQAPFFGPIMFFTYIVLIVMILMNMFIGIICDAFAAVRXXXXXXXXTDVMKFMSQRMKKFTGI 3283
LP W + +G+ S V FF MLYG +G+ S +W+++M +SF +S+F+ QP+KV+ + F+L++K D++D++AP D + +S D ++ P +E+ + L E++ +++EI+ + FL + L+VAY DP +++L + + + + GV+ E+F WA +++ L+ + GF D SK++ A+ RQ+RV++ SC + + C A YS E +Y GW N T W+Y++ + Q +P GK Y GG Y V +G ++ KI+ + +N W+D TRA+ E+ +YNAN NL I T E G + + +QSLRLY + G ++ ++I+ + F+ +Y V + R Y + WNLL + S A+ + R + ++ E SF+ A + + I F+V + ++ +LR N ++ ++T + ++ F ++ + + +AY ++ ++ KL Y T+ ++ + +G F+ E++D +P G + + IV + +++N+FI +I AF+ ++ EE +++ + ++ F GI
Sbjct: 1817 LPWWCILVGWLLVAATSGVAAFFTMLYGLHYGRASSLRWLISMAVSFVESMFVTQPLKVLGFAAFFALVLK--RVDDEEDTVAPLPGHLLGPDPYALFRARRNSSR--------------DVYQPPLTAAIEKMKTTHLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAYHLNRHLQHS----------------------FTRGFSGVLGFREFFKWANTTLVSNLY-------------GHPPGFITDG-NSKLVGSAQIRQVRVQESSCPLAQQPQAYLNGCRAPYSLDAEDMADYGEGW----NATTLSE----------------WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFL--FLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSEEQKYYQLSEEGEIVDLLLMKILSFLGI 2427 HSP 2 Score: 190.66 bits (483), Expect = 1.225e-48 Identity = 113/352 (32.10%), Postives = 189/352 (53.69%), Query Frame = 2
Query: 2 QASPETSDKETICYCDHLTDFGGGGPFAEPNPIDFGAALSGFGNIGDNPTVFSVVLSIFGLYLIMLVWARWKDKKDIAMNALYPLEDNHPNDTYFYELSVSTGYQSNAGTTSELFITLHGTLGESSPRKLTPTDRKCFQKAGQDNFLLAVPYSLGDLKAIEIWHNNTGASPGWFHMETNIRDTTTMKKYIFVSNQWFDVAEEDGLISRKVERAAKSDLVDFNFMFAKTLRKNLYDGHIWFSIFTRPATSTFTRCQRXXXXXXXXXXXXXXXXMFYTGDEAGPPSASVVIGPFTISIEMIRVGVTSALIVVPAHLLVILLFKKAGPKKIKQESEEEGEMGDDALNASQVKWDD 1057
Q P TS +T C C+HLT FG N I+ F DNP V + V + +Y+++++WAR KD +D A + LEDN P Y Y ++V TG++ A T+S++ +TL+G GE P L D F++ D FLL+ + LG+L+++ +WH+N+G P W+ + D +K+ F+ N W + D ++ + A + D F+ +F DGHIW+SIF+R A S+FTR QR++ C +LLL TML + MF+ G P + +G + + + +G+ S++++ P +LL++ +F+ P+ K+++ + + G L S +D
Sbjct: 1298 QVGPRTSPYQTHCLCNHLTFFGSTF-LVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFW-GVPKDPAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVAKEQNTGKWDRGSPNLTPSPQPMED 1647 The following BLAST results are available for this feature:
BLAST of TCONS_00049768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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