TCONS_00049802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049802
Unique NameTCONS_00049802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049802 ID=TCONS_00049802|Name=TCONS_00049802|organism=Clytia hemisphaerica|type=transcript|length=347bp
ACCCCGTCAGCATTTTTGACAACTCTTTGCACTTCTTCATTGTAAGCTTT
ACCGTCTTTGTATGATTTCAAAATGGCGTTCTCCATCGCGGCTTCTTTGG
TTGCTTTGGCAAGATTGAATGAGTAAGGATCGGCAGCTGCATATGCCACC
ATGAGACACAAACTCAAGAAAGCGAAATGGATAATGATTTCCTTCAGAAT
AAGTTTGACACGTTTTTCCTCTAATCTGGCCATTCTAGCTTCTTCTAATT
TTCGTTCTTCAGGCAATTTGAATTCatccaatttctttttctttttggtg
atattttctgcttcttcttcaAGCTCACTGTCTTCGTCTGAGTCTGT
Run BLAST on NCBI

transcript from alignment at scaffold_166:310097..311059-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049802 ID=TCONS_00049802|Name=TCONS_00049802|organism=Clytia hemisphaerica|type=transcript|length=963bp|location=Sequence derived from alignment at scaffold_166:310097..311059- (Clytia hemisphaerica)
ACCCCGTCAGCATTTTTGACAACTCTTTGCACTTCTTCATTGTAAGCTTT
ACCGTCTTTGTATGATTTCAAAATGGCGTTCTCCATCGCGGCTTCTTTGG
TTGCTTTGGCAAGATTGAATGAGTAAGGATCGGCAGCTGCATATGCCACC
ATGAGACACAAACTCAAGAAAGCGAAATGGATAATGATTTCCTTCAGAAT
AAGTTTGACACGTTTTTCCTGTTGAAATGAAATAGAAGTGACATGTGATA
TAAGGGCTAGCTTAGTTGGTCCACTTTTCGCCTTCTCTCTTCGATTTTTT
TCGAAATTCAATCTCCCAAAGGGTCAATTTTCAAACTTGGCTTGGACATA
CCCGTCACCTCACAAACCTAGTACATATCCCATTTGACTAAAGAATGACT
TCCTGTAGTTGATAAGGCACAATAAACCTTCATAATTCTTGACTGACATG
AAGCTATCATTTGAGTCAGCTCTGATTAGCATAAAGCATTTGTATAGACT
GAGAAATGACTTATAAGTGTGAATTTAGGGGTCAAAGTAGTAAAAATTGG
GTAAAAAACCTAAAATACCCCAACTACACCCTATAAATAAGAACAGGATA
AGAACAGTTTGAGGCTCAAAGTGCCAAAAAAGAAAGAACAAACCGAGCCT
CACCAAAATTAAATTTTACCGGTTCTTAAAAAAAGTAAAAAAACAACTTA
CAAAATGTATAAATTAACCCAGCTGGCACACAACGTTGTTTCAACGTTCA
TCTAACGTTATATGGACGTTGTGAACGTTAGATAAACGTTAAAACAACGT
TGTGTGCTAGCTGGGAAGTGTGAATATAACTTACAGCTAATCTGGCCATT
CTAGCTTCTTCTAATTTTCGTTCTTCAGGCAATTTGAATTCATCCAATTT
CTTTTTCTTTTTGGTGATATTTTCTGCTTCTTCTTCAAGCTCACTGTCTT
CGTCTGAGTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031571XLOC_031571Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049802-exon-scaffold_166-1575043694:310840..311059TCONS_00049802-exon-scaffold_166-1575043694:310840..311059Clytia hemisphaericaexon
TCONS_00049802-exon-scaffold_166-1575043694:310097..310223TCONS_00049802-exon-scaffold_166-1575043694:310097..310223Clytia hemisphaericaexon
TCONS_00049802-exon-scaffold_166-1510915933:310840..311059TCONS_00049802-exon-scaffold_166-1510915933:310840..311059Clytia hemisphaericaexon
TCONS_00049802-exon-scaffold_166-1510915933:310097..310223TCONS_00049802-exon-scaffold_166-1510915933:310097..310223Clytia hemisphaericaexon
TCONS_00049802-exon-scaffold_166-1491911889:310840..311059TCONS_00049802-exon-scaffold_166-1491911889:310840..311059Clytia hemisphaericaexon
TCONS_00049802-exon-scaffold_166-1491911889:310097..310223TCONS_00049802-exon-scaffold_166-1491911889:310097..310223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:310097..311059 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0113135	0	0.520474	0	0.346693	0	0.223702	0	0	0.138256	0.697206	0.0882145	7.89852	5.07402	2.41119	1.5418	1.47004	0.514563	14.1324	15.8452	0	3.51572	0.110447	1.60038	4.4845	5.67736	0	0	0.0547961	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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