TCONS_00049769 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049769
Unique Name	TCONS_00049769
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1909

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_166:311215..317149+

transcript sequence

>TCONS_00049769 ID=TCONS_00049769|Name=TCONS_00049769|organism=Clytia hemisphaerica|type=transcript|length=1909bp
GTCAAAAATGCTGACGGGgtTATGAATCGATTGGAATGGTTTGATTGGGC
ACGCTATTCAGTCATCGATTATCTTTTCCCATTCGGTTGGTATAACTGGG
ATACTACGCGTGAATTTGAATACAAAAAAGGATTTACTGCAGATACGATG
GCCTCCAAAGTGATGGCTATGGCACGTTTCAGACAACTTCGTGTCAAGAA
AGATTCGTGTCAGAAACATCCTGTATTCGAGCATCTGGTAGAAGAATGCA
ATGCTGGTTACAGCTGGAGTGTAGAACAACAAGAGAATTATTCTCCTGGA
TGGCAACCTGATTTGAATAAGACCATGAGATATCGCGCGCGTCGTGGTAA
AAGAAAGGCTCTATACTTAGGTTTGGAAGACCCATGGAGATACAAGACTT
CATCTGAACTCCAAGCTTTCCCATTCATGGGTAAATTCAAGACTTACGCT
GGAGGATCATATGCAGTCAGCATTGGACCAACCAAGAGAATTGCTAAGAA
AATCATTGAAAGCATGAAGGAGAATTTCTGGGTCGATCGATACACAAGAG
CCATTATTACTGAAGCTAATATTTATAACGCCAACACCAATTTGTTGTTG
ATCGCAACATTTTTGCATGAAATTTTGCCAACAGGTGGGTGGAGTCATTA
TTACAACATCCAATCATTGCGTTTGTACCGATACGTTGGAGGGCTGGGTC
AGATGATTCTTTTGTTTGATATCATCTTTGTTATTGTCACTTTTATCGGC
TGGTATAAGGTAGCAAAACATTCACGAAAAATGGGTGGTTTCAAAAAATA
CTTAGCAAACGCATGGAACTTGCTTCATTTCATTGTCACTTTCTGTTCAA
CGGGCGCTATCGTTTGTACAATCGGGCGGAAATTATTCGTAAGGTGGGCG
GTAGAAAACTATGTAGCTGAACCGGAGATGTATACTAGCTTTGCAACTGT
GGCTCAATTAGAATATTTCATCATGGGTTTCATTGGGTTCGTTGTCTTCT
TCACTAACCTGGAATTCTTACGTATCCTTCGATTCAATCGCCGCGTCGGA
TTATTGACCAAAACGGTAGCCATTATTGGCGCCCCAATGGCTTCGTTCGG
TGTTTTATTCATTGTTGTTTTCATGGCTTACGTCAGTTTCGCACATTGTG
TTTACAGTGATAAACTTGAAGGTTACTCGACCATCATGTTTACATTTGTC
TCGCTTACTGAAATGTTTATGGGAGCTTTCGATATTAACGAGCTGGTTGA
TCAAGCCCCATTCTTTGGACCAATCATGTTCTTCACTTACATCGTTTTAA
TCGTCATGATTTTGATGAATATGTTTATCGGTATCATTTGCGACGCTTTC
GCGGCCGTGCGGGAAGAATCTGACGAAGAGGAGGAAACTGACGTCATGAA
ATTTATGTCTCAACGCATGAAGAAATTTACCGGCATTGCTGGTGGTCCAA
TGGCACCCATCTACAGTGATTGGAAATCAGACTGGGAGATCACCATGGAA
AAACTCGAGGATCGTTGCGAGAATTGTTTATACGCCATGAAAAATGTTGA
GAATGAAGAAATCCGCACAGATAAATGGTTCCGCATTGCAGATCCTAAGA
AACGAAGCATGTTGGCAGGTCTTGTGGGAAGTGAATATTTGTTGTATGAA
AACGAGTTGATTGACGCGCTCCAAGTTATTGATCGCCGTTTGAAACGCAT
GTCTCCAGACGATGCTGAAGAGTTCTTGCAAGCGGCCGCGCGCATGCGTG
CGCACGAGAAGgcggaagaagaagaagaagatgatgaTGAAAGTGATGAT
GAAGAATCTGAATATGAAACGGAGGAGAGTGGTGAAGATTCTGGTGAAGA
AACAGAGTGAAGGAGTGTAATTTTTAACCTTTTATAGCACTTTTGTCATC
TCGGAGCAC

Run BLAST on NCBI

transcript from alignment at scaffold_166:311215..317149+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049769 ID=TCONS_00049769|Name=TCONS_00049769|organism=Clytia hemisphaerica|type=transcript|length=5935bp|location=Sequence derived from alignment at scaffold_166:311215..317149+ (Clytia hemisphaerica)
GTCAAAAATGCTGACGGGGTAAAATATATTCTCGCACTTCTATATACACA
ATTATATAGTAGGGTGTATATTAATTTGGTCATCAAAAATGCTGACTATT
GCAAATTATCCTAGCTTAGATATGATATCCAAATTGATTAGACCAGAATT
AGTATAGCCTGATTGGGATATGAGAAAGGAAAatcaccttcattttttga
ttgacttttcatttgacttttttcaaactttcattttgaaaacCCACCGC
TCTCGGGCACCCCAAAATTTCCAAAGACGCCCAccgcccataaattttgc
tccatctatccgcccattcaagaaactttttgacctttttgagacttttt
tttacttttatttgactttttgactttttttcacagaatttttgacttta
tttttgactttttgactttttttgacttttttgactttttttgagaCTGA
ATTTGTAGAGGTTGACGATaatttttcaagtgatttaccccgCTCGGACG
AAGATCCGCATTCTCAGATTTTGGTAAAATCTAGCTTTCACTTCTGCAAA
AATGCTTGAATGGGTTTGATTATAATTATCTATTAAAATatcgttttttt
ctttctaggtTATGAATCGATTGGAATGGTTTGATTGGGCACGCTATTCA
GTCATCGATTATCTTTTCCCATTCGGTTGGTATAACTGGGATACTACGCG
TGAATTTGAATACAAAAAAGGATTTACTGCAGATACGATGGCCTCCAAAG
TGATGGCTATGGCACGTTTCAGACAACTTCGTGTCAAGAAAGGTAATAGT
CTTAAACCTTCTCTTAACACCTAAATAGATGTCCAAAATAGGAAAAatcc
gcaaaaattaattcccgcaaaatgttaattttttcacttttttcgaccgc
gaaaattagttcccttagtTAGGACAATTTTAAATGAATCACTATCCTGa
tctaaaattttatcattagaGAACATAATTCAGTAAAACCAGTGTATgaa
atattttgtgttttttggtCCACTCTTCTTAACTACAGTCACTTCTCTCT
AACCcatgatatttatgacgtaataatTTCTACGGAAGCACCAAGGTAGT
GACAAATTTAAGCTAGAGAGaaaaattgtttgaagtttGCCAGGACTGGC
AATGACTAGGTTGTTTCAATAGAAAACTTTACctaatgaatatcatgaat
tcaatATAGGATTTTAATTTGAATTAGGGAAAAGAATTCAATCTTTAAGG
GGATATAGGATTTTAATTCGAATTAgggaaaaattcgaattatatgGAGA
GCTTTTTATGGAACttctttccagctgaggggacaatatttttagttcga
attacagaaatattcgaatagtagaggttcgaattagagagagttgtcTG
TAGCTTTGCTTTGCTAAAAATgccgcaaaaatttcaattattcATTTCTT
CCTCTCTAGATTCGTGTCAGAAACATCCTGTATTCGAGCATCTGGTAGAA
GAATGCAATGCTGGTTACAGCTGGAGTGTAGAACAACAAGAGAATTATTC
TCCTGGATGGCAACCTGATTTGAATAAGACCATGAGATATCGCGCGCGTC
GTGGTAAAAGAAAGGCTCTATACTTAGGTTTGGAAGACCCATGGAGATAC
AAGAGTGAGTGAATTATCATAGGCCACTATTCATCCATCATATACATAGC
TGATGAGTTCTCTTCAATTTTAGAATGTGATAATCTTTTTCCAGCATGGT
TaacttttaataacattttccaaaaaaacattgTTGATGATTTTAATCTG
CCGGTCTGATTAGCTCTTATTTAAGGGCTCAATACTGGGTATCCGGACAA
TTCCCCAACCGACAATTTCCCGACGGACAAGTCCCCGACAATACTGGTCA
TTGATAAATGCATCTGCATTTGGTATTTAAATAGCTCACATAATACGAGG
TGCATttaccgtagtcgcgcggtcaggcgcgtgccactttattatttgat
ttgccatcctaaactcgatccaatcctttttttacacttttttctattgc
attttaagtgcgaaaaaaagactgggacagttttatgtggtaaaacggac
aaaatatTGCCCGCGCGGCAATCGGCGGCTTctgtcgaaaaggtgtatta
gcgTCTTAACTATctttcttttattattattttccgAAAACAGCTTCATC
TGAACTCCAAGCTTTCCCATTCATGGGTAAATTCAAGACTTACGCTGGAG
GATCATATGCAGTCAGCATTGGACCAACCAAGAGAATTGCTAAGAAAATC
ATTGAAAGCATGAAGGAGAATTTCTGGGTCGATCGATACACAAGAGCCAT
TATTACTGAAGCTAATATTTATAACGCCAACACCAATTTGTTGTTGATCG
CAACATTTTTGCATGAAATTTTGCCAACAGGTATAGATATTTCATATACA
GTTGACTCCCGCTACTTCcaaattctattattcgaatctttttctcAGAT
TGAATTCTCAGTCACCGTCAATGGAAACCGTCGTAGAATTCTCTcgataa
ttcgaacaaattaatCATCCTGTTCGATTTCGAATAGAGAGAGTTACCCT
CAAATGAGAGTGTTTATTAATATCTAAAGCAGAAAATTTTACTTACTTTA
AGGGTAGAAACTAACTTTAAACCATAATTCGCGAAAActtaaattcgcta
aatttcgcgactttttgacTTCGCAAAACTTTCTGtccgcgaaactttct
gcccttaaagtaaccATTTCGTTTCTCTTTACAGGTGGGTGGAGTCATTA
TTACAACATCCAATCATTGCGTTTGTACCGATACGTTGGAGGGCTGGGTC
AGATGATTCTTTTGTTTGATATCATCTTTGTTATTGTCACTTTTATCGGT
GAGTTATTTTTCAATATCATAATAAGTTTCTTAAAATAATTGGGttgttc
cattaaaaatccatacagggggtggacgaaccttttcaagtcaaaaataa
cttattgaaaatgtgtcgataccccctggaaagtggtgaaatttgcaaaa
gtacctttttaaagattcttttcgtaccttaaagtgagggtggacgaatt
aaaatcagtcttttaccccttggaaaaatgaaaaaaaataagctaaCCAT
TAGACTAATggaccattccattttatatccatacatgggTGGGGGTGGGG
TGGACGAACGAACATTTCAAGAGGGTTATCCGAGAAATATTTCCAGGTat
atttcttggattaccctctggaaatgttcgttcGTCCACCCCTCCCccac
ccctgtatggatataaaatggaatggtccATTAGTCTTATGCTTAGCTAA
GGCCCTTTGTTTAGGCTGCACCATCCAATGAGACATGAACGTCccagaaa
aaaacatgtagataGATCTACAGAAATTAACTTTAATATTCGACAGATGA
TGATAtagataaattttaaatttacctTATCATTATCTTTACGATCGATC
TTTCTACTTCAACTCATTTTTTCCATAATAAGACGATAATCATTGCTTTC
GAATTATCTTGATATTTATAATCGTCTATTCATTATTTCtgtatcaaaac
aaatcaatttttgataaaagaaaaatttattccTTTTAATTTATTCTTTA
GGCTGGTATAAGGTAGCAAAACATTCACGAAAAATGGGTGGTTTCAAAAA
ATACTTAGCAAACGCATGGAACTTGCTTCATTTCATTGTCACTTTCTGTT
CAACGGGCGCTATCGTTTGTACAATCGGGCGGAAATTATTCGTAAGGTGG
GCGGTAGAAAACTATGTAGCTGAACCGGAGATGTATACTAGCTTTGCAAC
TGTGGCTCAATTAGAATATTTCATCATGGGTTTCATTGGGTTCGTTGTCT
TCTTCACTAACCTGGAATTCTTACGTATCCTTCGATTCAATCGCCGCGTC
GGATTATTGACCAAAACGGTAGCCATTATTGGCGCCCCAATGGCTTCGTT
CGGTGTTTTATTCATTGTTGTTTTCATGGCTTACGTCAGTTTCGCACATT
GTGTTTACAGTGATAAACTTGAAGGTAATATTCTACTCTTTTTTAAAGGT
AACATGCTATAACAGTAGAATAGGCcgtttcacagtcgcaaagcgtaatg
ggtaatcaggaccactgcgcgctaatgacgacttactattggtccaaagt
tttgaaaactttcgaagatttttgcgtctagccagcAGAAAGCCGTTATC
GAGGTGCAATCAgttctgattacccatgatccatttccactgtgaaatgg
cctatttcGACTTGAGATAAAGTATGACAGGGTCAGTATCTGAAGAATAA
TTGAAGGCTTGACCCCTTATACTCTTAAACGTTTGTTgcattataaaatt
atttgaCCATGTtaatatacagttgacgctctctaattcgatcttcaagg
ggaagttgaattttcatcgaataagggagcgtcgtttatgagagtttctt
gttgacggcgactttaaatttcatcgaataagggggcctatcgaatagta
gaacatcGAATTAGCGAGCGTCAACTGAATCGTACTTGTATTATAAACAA
CTGTAATCTAACTTTATGAAACGTTTTTTTTCACAGGTTACTCGACCATC
ATGTTTACATTTGTCTCGCTTACTGAAATGTTTATGGGAGCTTTCGATAT
TAACGAGCTGGTTGATCAAGCCCCATTCTTTGGACCAATCATGTTCTTCA
CTTACATCGTTTTAATCGTCATGATTTTGATGAATATGTTTATCGGTATC
ATTTGCGACGCTTTCGCGGCCGTGCGGGAAGAATCTGACGAAGAGGAGGA
AACTGACGTCATGAAATTTATGTCTCAACGCATGAAGAAATTTACCGGCA
TTGCTGGTAAGTTGCAATTCTTTTTCCCTACACAAATGGAAAATGAGTGT
TCTACGGTTCATTTGCCTTCCAATGAGGAATGAGGTAGACTCAAACAAAG
TAATCAACAAAATTTGTCCTCTAACTCATAGGGGTCCAATAGCATAGCAT
CGAATTTCGACAATAGATTCATTGTTTTCATGCTAAAATTACacttttat
taatttcattaaCGTTTTTTTCATTAGAATGTTGGGATTAAGGTAGACCT
AAACAAAGTAGTGACCTGgaagctcagtcggtagagcataaGGGGATAGA
CCCCCGGCTCCATCGATAGCCACCAAATAAATATACTTTGAAACAAAGTA
ATGAAAATTCTTCCCGTTACTTACAGGTGGTCCAATGGCACCCATCTACA
GTGATTGGAAATCAGACTGGGAGATCACCATGGAAAAACTCGAGGATCGT
TGCGAGAATTGTTTATACGCCATGAAAAATGTTGAGAATGAAGAAATCCG
CACAGATAAATGGTTCCGCATTGCAGATCCTAAGAAACGAAGCATGTTGG
CAGGTCTTGTGGGAAGTGAATATTTGTTGTATGAAAACGAGGTTAGTcgc
tttgttttttaaaaaccttttggAATGATGCCATTTTTGCTTGAGGTATT
TTGGTTTTGGgtagttcttattaaaaaacagaCTATCCACCTACAAATGT
TGTAGAAACCGCCAGTTAAAAAGCTTGTAATGCAATCTATTTTCTAATTT
ATTAATTTAATCCCTGTAATTTCTTCTCATAGTTGATTGACGCGCTCCAA
GTTATTGATCGCCGTTTGAAACGCATGTCTCCAGACGATGCTGAAGAGTT
CTTGCAAGCGGCCGCGCGCATGCGTGCGCACGAGAAGgcggaagaagaag
aagaagatgatgaTGAAAGTGATGATGAAGAATCTGAATATGAAACGGAG
GAGAGTGGTGAAGATTCTGGTGAAGAAACAGAGTGAAGGAGTGTAATTTT
TAACCTTTTATAGCACTTTTGTCATCTCGGAGCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031556	XLOC_031556	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_166	supercontig	scaffold_166:311215..317149 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.664676	0.214323	0.178929	0.225147	0.188468	0.0541641	0.282265	0.0731263	0.0659619	0.127256	0.153278	9.75122	8.58515	1.20978	0.506043	0.679455	0.834573	19.4925	15.2041	2.82124	1.38206	0.942393	1.93333	2.19226	2.97054	0.426324	0.319889	0.0474114	0.249062

Blast

[Close]

BLAST of TCONS_00049769 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4)

HSP 1 Score: 179.874 bits (455), Expect = 8.192e-47
Identity = 117/474 (24.68%), Postives = 218/474 (45.99%), Query Frame = 1

Query:   16 GVMNRLEWFDWARYSVIDYLFPFGWYNWDTTREFEYKKGFTADTMASKVMAMARFRQLRVKKDSCQKHPVFEHLVEECNAGYSWSVEQQENYSPGWQPDLNKTMRYRARRGKRKALYLGLEDPWRYKTSSELQAFPFMGKFKTYAGGSYAVSIGPTKRIAKKIIESMKENFWVDRYTRAIITEANIYNANTNLLLIATFLHEILPTGGWSHYYNIQSLRLYRYVGGLGQMILLFDIIFVIVTFIGWYKVAKHSRKMGGFKKYLANAWNLLHFIVTFCSTGAIVCTIGRKLFVRWAVENYVAEPEMYTSFATVAQLEYXXXXXXXXXXXXTNLEFLRILRFNRRVGLLTKTVAIIGAPMASFGVLFIVVFMAYVSFAHCVYSDKLEGYSTIMFTFVSLTEMFMGAFDINELVDQAPFFGPIMFFTYIVLIVMILMNMFIGIICDAFAAVRXXXXXXXXTDVMKFMSQRMKKFTGI 1437
            GV+   E+F WA  +++  L+              +  GF  D   SK++  A+ RQ+RV++ SC      +  +  C A YS   E   +Y  GW    N T                    W+Y++  + Q +P  GK   Y GG Y V +G  ++   KI+  + +N W+D  TRA+  E+ +YNAN NL  I T   E    G +  +  +QSLRLY +  G    ++  ++I+ +  F+ +Y V +  R       Y  + WNLL   +   S  A+   + R +     ++      E   SF+  A  +  +   I F+V  + ++   +LR N ++ ++T  +      ++ F ++ + + +AY   ++ ++  KL  Y T+     ++  + +G F+  E++D +P  G  +  + IV +  +++N+FI +I  AF+  ++     EE +++  +  ++  F GI
Sbjct: 1990 GVLGFREFFKWANTTLVSNLY-------------GHPPGFITDG-NSKLVGSAQIRQVRVQESSCPLAQQPQAYLNGCRAPYSLDAEDMADYGEGW----NATTL----------------SEWQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFL--FLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSEEQKYYQLSEEGEIVDLLLMKILSFLGI 2427

The following BLAST results are available for this feature:

BLAST of TCONS_00049769 vs. Swiss-Prot (Human)

BLAST of TCONS_00049769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PK1L2	8.192e-47	24.68	Polycystic kidney disease protein 1-like 2 OS=Homo...	[more]

You are here

TCONS_00049769 (transcript) - C. hemisphaerica