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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049770 ID=TCONS_00049770|Name=TCONS_00049770|organism=Clytia hemisphaerica|type=transcript|length=2721bpRun BLAST on NCBI protein sequence of TCONS_00049770-protein >TCONS_00049770-protein ID=TCONS_00049770-protein|Name=TCONS_00049770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp FNMQRFIQRHVGNKIKKYVFHYKTTRLNTSTLSSAAGFNNYDEAVKNYTCRun BLAST on NCBI transcript from alignment at scaffold_166:321759..336321+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049770 ID=TCONS_00049770|Name=TCONS_00049770|organism=Clytia hemisphaerica|type=transcript|length=14563bp|location=Sequence derived from alignment at scaffold_166:321759..336321+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_166:321759..336321+ >TCONS_00049770 ID=TCONS_00049770|Name=TCONS_00049770|organism=Clytia hemisphaerica|type=CDS|length=17532bp|location=Sequence derived from alignment at scaffold_166:321759..336321+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049770 vs. Swiss-Prot (Human)
Match: ACSM3 (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Homo sapiens GN=ACSM3 PE=1 SV=2) HSP 1 Score: 500.36 bits (1287), Expect = 7.319e-166 Identity = 226/449 (50.33%), Postives = 311/449 (69.27%), Query Frame = 1
Query: 97 SSAAGFNNYDEAVKNYTCEVPNDFNFAEHVLEEWKRKEQLGKRDANHPAFWWVDDAGNELQYSFSELLAQSNKVSNILYGDLGIQKGECVIVVLPRIPEWWLVNIACLKIGAILCPGTTSLTAKDLFGRLNASKATCIITTPEIASLVDQIPDVDVPNLKRKISVGGAERDGWLPMHSLMRNASPEFKTLPCKSEDPMSWFFTSGTTGLPKMTEHTHASYGFAHRDTGRYWLDLTENDTMWNLSDTGWAKSAYSSVYAPWWQGSCVFVYNAPRFDAKETLRVLEKYSISVTCLPPTAYRMFANEDVSSYKFKALRHCVSAGEPLNPEIIDYWYRTTGISIREGYGQTEMTLSCGMFRCLDMKAGSMGKPTPGYDIQIIDNKGNKMKPGEEGNVAVNCSPKPPVGLFSKYVDDPERTSAAFCGNFYLTGDRGYMDEDGYLWFVGRADDVI 1443
++ F+NY+ +++ +P FNFA+ VL++W KE+ GK+ +N PAFWW++ G E+++SF EL + S K +NIL +Q+G+ VI++LPR+PEWWL N+ACL+ G +L PGTT LT KD+ RL +SKA CIIT +A VD + NL K+ V R+GW + LM++AS + K + M+ FFTSGT+G PKMT HTH+S+G GR+WLDLT +D MWN SDTGWAKSA+SSV++PW QG+CVF ++ PRF+ L+ L KY I+V C PT YRM D++SYKFK+L+HCVSAGEP+ P++ + W TG+ I EGYGQTE L CG F+ + +K GSMGKP+P +D++I+D GN + PG+EG++ + P P GLF+ YVD+P +T++ GNFY+TGDRGYMD+DGY WFV RADDVI
Sbjct: 35 ATPQNFSNYESMKQDFKLGIPEYFNFAKDVLDQWTDKEKAGKKPSN-PAFWWINRNGEEMRWSFEELGSLSRKFANILSEACSLQRGDRVILILPRVPEWWLANVACLRTGTVLIPGTTQLTQKDILYRLQSSKANCIITNDVLAPAVDAVAS-KCENLHSKLIVSENSREGWGNLKELMKHASDSHTCVKTKHNEIMAIFFTSGTSGYPKMTAHTHSSFGLGLSVNGRFWLDLTPSDVMWNTSDTGWAKSAWSSVFSPWIQGACVFTHHLPRFEPTSILQTLSKYPITVFCSAPTVYRMLVQNDITSYKFKSLKHCVSAGEPITPDVTEKWRNKTGLDIYEGYGQTETVLICGNFKGMKIKPGSMGKPSPAFDVKIVDVNGNVLPPGQEGDIGIQVLPNRPFGLFTHYVDNPSKTASTLRGNFYITGDRGYMDKDGYFWFVARADDVI 481 HSP 2 Score: 184.496 bits (467), Expect = 4.073e-49 Identity = 88/126 (69.84%), Postives = 100/126 (79.37%), Query Frame = 2
Query: 1433 MTSXRGYMDEDGYLWFVGRADDVIISSGYRIGPFEVESVLIEHPEVAESAVVSSPCDVRGEVVKAFVIPTKPLDEIDAETLTVELQDHVKKSTAPYKYPRKIEFVDSLPKTISGKIRRVELRAKEW 1810
+T RGYMD+DGY WFV RADDVI+SSGYRIGPFEVE+ L EHP VAESAVVSSP +RGEVVKAFV+ D E L E+Q+HVKK+TAPYKYPRK+EF+ LPKTISGK +R ELR KEW
Sbjct: 458 ITGDRGYMDKDGYFWFVARADDVILSSGYRIGPFEVENALNEHPSVAESAVVSSPDPIRGEVVKAFVVLNPDYKSHDQEQLIKEIQEHVKKTTAPYKYPRKVEFIQELPKTISGKTKRNELRKKEW 583 The following BLAST results are available for this feature:
BLAST of TCONS_00049770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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