TCONS_00049838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049838
Unique NameTCONS_00049838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049838 ID=TCONS_00049838|Name=TCONS_00049838|organism=Clytia hemisphaerica|type=transcript|length=329bp
TAATAATGATATATTAATGATATAATCTTAAACGATGCTACCGTCCgtgt
aatatattattatgatattatcatataacatagtttatattataaaacgt
aatatgttgcgcGGCGGAAAATAGAATCTGTGTTTACGACATTGAGCCCC
TCCGACTATTTTTCGCACGCGCGGACAAAATTTCCGCCCGACTGCTAACT
TGTGTGTTTCAGGTTATTCTTTATTATTCGAACCTTTGActatactcccg
aaacaatcccacaatgcatcgcttttttagaaaaatcaaaaactccgata
agatctattcgAATGAATTCTCATTCCCG
Run BLAST on NCBI

transcript from alignment at scaffold_166:336532..336860

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049838 ID=TCONS_00049838|Name=TCONS_00049838|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at scaffold_166:336532..336860 (Clytia hemisphaerica)
CGGGAATGAGAATTCATTcgaatagatcttatcggagtttttgatttttc
taaaaaagcgatgcattgtgggattgtttcgggagtatagTCAAAGGTTC
GAATAATAAAGAATAACCTGAAACACACAAGTTAGCAGTCGGGCGGAAAT
TTTGTCCGCGCGTGCGAAAAATAGTCGGAGGGGCTCAATGTCGTAAACAC
AGATTCTATTTTCCGCCgcgcaacatattacgttttataatataaactat
gttatatgataatatcataataatatattacacGGACGGTAGCATCGTTT
AAGATTATATCATTAATATATCATTATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031597XLOC_031597Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049838-exon-scaffold_166-1491911889:336532..336860TCONS_00049838-exon-scaffold_166-1491911889:336532..336860Clytia hemisphaericaexon
TCONS_00049838-exon-scaffold_166-1510915933:336532..336860TCONS_00049838-exon-scaffold_166-1510915933:336532..336860Clytia hemisphaericaexon
TCONS_00049838-exon-scaffold_166-1575043694:336532..336860TCONS_00049838-exon-scaffold_166-1575043694:336532..336860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:336532..336860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.674214	0.882963	0.399239	1.26104	0.380512	1.47041	1.05525	1.40418	3.66964	0.209922	0.599624	1.64066	0.342792	0.203831	0	1.05937	2.63668	1.01963	0.289189	2.73425	0	0.315208	2.86234	0.855246	1.33663	0	1.32441	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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