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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004868 ID=TCONS_00004868|Name=TCONS_00004868|organism=Clytia hemisphaerica|type=transcript|length=6125bpRun BLAST on NCBI protein sequence of TCONS_00004868-protein >TCONS_00004868-protein ID=TCONS_00004868-protein|Name=TCONS_00004868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=829bp MATTNEMEAKLQALFQTMVAESVESSNVMEEASSENTHEIVIQENGVVRFRun BLAST on NCBI transcript from alignment at sc0000049:508604..526861+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004868 ID=TCONS_00004868|Name=TCONS_00004868|organism=Clytia hemisphaerica|type=transcript|length=18258bp|location=Sequence derived from alignment at sc0000049:508604..526861+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000049:508604..526861+ >TCONS_00004868 ID=TCONS_00004868|Name=TCONS_00004868|organism=Clytia hemisphaerica|type=CDS|length=17430bp|location=Sequence derived from alignment at sc0000049:508604..526861+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004868 vs. Swiss-Prot (Human)
Match: ZN665 (Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 PE=2 SV=2) HSP 1 Score: 232.261 bits (591), Expect = 1.056e-63 Identity = 151/430 (35.12%), Postives = 209/430 (48.60%), Query Frame = 2
Query: 3167 NRLNGFPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIHEN-KQRKCRKCDNAYPKLSDLVSHWNAHHSDADKPFLCVDCFTXXXXXXXXXXXXXXXXAWKQGEYACDRCGTVFNRKGNLKKHLERVDCSERPFACELCEQTFRKKKSVEEHMLRDHGVEKDYECQKCKKVFKMEKLLKMHEKRTHGVVKCYCTLCPQRVFSSHKDLMDH 4453
NR + C C +V + L H RIHTGEKP+ C C FT ++L H + HTGEKP+KC+ CG F+Q ++L GH R H GEKP+KC CG+ F A L TH+ IH + +KC C + + + H + HT + + K ++L TI G K + CNEC V L H+R HTGE+PY C+ C S L +H + H+ EKPF+C C K F Q HL H++IH K +C +C A+ S L +H H +KP+ C DC F + L H+ K Y CD CG F++ L +H RV E+P+ C C + F S+ H H +K Y+C C KVF+ L +H++ G C C + FS H +L H
Sbjct: 108 NRGKHYKCDECGKVFSQNSRLTSHKRIHTGEKPYQCNKCGKAFTVRSNLTIHQVIHTGEKPYKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASH-RRIHTGEKPYKCNECG--KAFSVRSSLTTHQTIHTGEK----PYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIH--TGEKPYKCNDCGKVFTQNSHLASHRGIHSGEK--PYKCDECGKAFSQTSQLARHW-RVHTGEKPYKCNECGKAFSVHSSLTIHQT-IHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECG-KAFSVHSNLATH 523 HSP 2 Score: 221.861 bits (564), Expect = 3.418e-60 Identity = 152/439 (34.62%), Postives = 215/439 (48.97%), Query Frame = 2
Query: 500 NRLNGFQCPHCPRILATKYSLQVHTLVHTGERPHACTLCSSRFTTPGDLRRHMVIHTGEKPYKCDVCDARFTQSGSLKGHSKLHPGEKPHKCEECGETFVAAVLLKAHKRFHSATQRFKCTHCDEMFSTVELVMEHCQVHHMISYEDPNNEVEDGITSVVDVS-----SILYGRKPSKRKSPCDICGKVLSSVYALQIHKRTHTGEKPYRCEICDYRSTCPSVLKRHMLRHSEEKPFECELCSKGFRQKSHLKKHMLLH-DRKKNRCPKCQEEFNGMNALMEHYSENHGNPERPEVCTRCFDDFXXXXXXXXHIKQTHLNFTDTHLFED-FKCHKCGILFNRKGNLKRHLE-NSCNGSFQCDKCDENFMKKSKLAEHQWKVHGCKKKYECSLCNKSFTQIYVLKNHEKKIHGPNGVKCPLCPEKSFSSKKALFDHKRTH 1792
NR ++C C ++ + L H +HTGE+P+ C C FT +L H VIHTGEKPYKC+ C F+Q +L GH ++H GEKP+KC ECG+ F A L H+ H+ + +KC C + F+ + H ++H + E P E G V S +I G KP K C+ CGKV L H+R HTGEKPY+C C + S L +H + H+ EKPF+C C K F Q SHL H +H K RC +C + F+ ++L H + + G E+P C C F L H H E +KC +CG F++ L RH ++ ++C++C + F S L HQ +H +K Y+C+ C K F L H++ G KC C K+FS L H+ H
Sbjct: 108 NRGKHYKCDECGKVFSQNSRLTSHKRIHTGEKPYQCNKCGKAFTVRSNLTIHQVIHTGEKPYKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASHRRIH---TGEKPYKCNECGKAFSVRSSLTTHQTIHTGEKPYK----CNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTG--EKPYKCNDCGKVFTQNSHLASH--------RGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQ-TIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECG-KAFSVHSNLATHQVIH 527 HSP 3 Score: 218.009 bits (554), Expect = 6.679e-59 Identity = 149/426 (34.98%), Postives = 198/426 (46.48%), Query Frame = 2
Query: 3182 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIHEN-KQRKCRKCDNAYPKLSDLVSHWNAHHSDADKPFLCVDCFTXXXXXXXXXXXXXXXXAWKQGEYACDRCGTVFNRKGNLKKHLERVDCSERPFACELCEQTFRKKKSVEEHMLRDHGVEKDYECQKCKKVFKMEKLLKMHEKRTHGVVKCY-CTLCPQRVFSSHKDLMDH 4453
+ C+ C +V + +L H RIHTGEKP+ C C F + L H + HTGEKP+KC CG FTQ + L H R H GEKP+KC CG+ F L TH+ IH + +KC C + + + +H + HT + + K + L I G K F CNEC V T L H+R HTGE+PY C C S L H H+ EKP++C C K F Q HL H+ IH K KC +C A+ + S L HW H +KP+ C +C F L H+ Q Y C+ CG VF L H +R+ E+P+ C C + F ++ H + H EK Y+C +C KVF L H +R H K Y C C + FS L H
Sbjct: 169 YKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASHRRIHTGEKPYKCNECGKAFSVRSSLTTHQTIHTGEKPYKCNECGKVFRHNSYLAKH-RRIHTGEKPYKCNECG--KAFSMHSNLTKHQIIHTGEK----PFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVH--TGEKPYKCNECGKAFSVHSSLTIHQTIHTG--QKPYKCNDCGKVFRHNSYLAIH-QRIHTGEKPYKCNECGKAFSVHSNLATHQV-IHTGEKPYKCNECGKVFTQNSHLANH-RRIHTGEKPYRCNECG-KAFSVRSTLTTH 579 HSP 4 Score: 177.948 bits (450), Expect = 7.991e-46 Identity = 114/338 (33.73%), Postives = 162/338 (47.93%), Query Frame = 2
Query: 3182 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIHEN-KQRKCRKCDNAYPKLSDLVSHWNAHHSDADKPFLCVDCFTXXXXXXXXXXXXXXXXAWKQGEYACDRCGTVFNRKGNLKKH 4192
+ C+ C +V L H RIHTGEKP+ C C F+ ++L +H + HTGEKPFKC+ C FTQ + L H R H GEKP++C CG+ F L TH+ IH + +KC C + + + H + H+ + + K + + L + G K + CNEC + SL IH+ HTG++PY C+ C S L H H+ EKP++C C K+F +L HQ IH K KC +C + + S L +H H +KP+ C +C F L H K Y C++CG VF + NL KH
Sbjct: 281 YKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASH-RGIHSGEKPYKCDECG--KAFSQTSQLARHWRVHTGEK----PYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIH--TGEKPYRCNECGKAFSVRSTLTTHMAVHTGDK--PYKCNQCGKVFTQNSNLAKH 607 HSP 5 Score: 162.155 bits (409), Expect = 9.177e-41 Identity = 93/254 (36.61%), Postives = 126/254 (49.61%), Query Frame = 2
Query: 3182 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSSEKPFQCEHCPKSFRQLPHLKKHQQIH 3943
+ C C + + + SL H IHTGEKP+ C C FT + L H H+GEKP+KCD CG F+QT+ L H R H GEKP+KC CG+ F L H+ IH + +KC C + + + H Q HT + + K + L I G K + CNEC V T L H+R HTGE+PY C+ C S L H+ H+ +KP++C C K F Q +L KH++IH
Sbjct: 365 YRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIH-QRIHTGEKPYKCNECG--KAFSVHSNLATHQVIHTGEK----PYKCNECGKVFTQNSHLANHRRIHTGEKPYRCNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIH 611 HSP 6 Score: 134.035 bits (336), Expect = 7.304e-32 Identity = 78/225 (34.67%), Postives = 108/225 (48.00%), Query Frame = 2
Query: 515 FQCPHCPRILATKYSLQVHTLVHTGERPHACTLCSSRFTTPGDLRRHMVIHTGEKPYKCDVCDARFTQSGSLKGHSKLHPGEKPHKCEECGETFVAAVLLKAHKRFHSATQRFKCTHCDEMFSTVELVMEHCQVHHMISYEDPNNEVEDGITS---VVDVSSILYGRKPSKRKSPCDICGKVLSSVYALQIHKRTHTGEKPYRCEICDYRSTCPSVLKRHMLRHS 1180
++C C ++ L H +H+GE+P+ C C F+ L RH +HTGEKPYKC+ C F+ SL H +H G+KP+KC +CG+ F L H+R H+ + +KC C + FS + H QV H NE T + + I G KP + C+ CGK S L H HTG+KPY+C C T S L +H HS
Sbjct: 393 YKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATH-QVIHTGEKPYKCNECGKVFTQNSHLANHRRIHTGEKPYR----CNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIHS 612 HSP 7 Score: 125.561 bits (314), Expect = 3.995e-29 Identity = 76/228 (33.33%), Postives = 107/228 (46.93%), Query Frame = 2
Query: 3182 FPCSYCSRVLATKYSLMIHTRIHTGEKPHHCTVCTSKFTHPTDLRRHMLKHTGEKPFKCDVCGAGFTQTTSLKGHSRQHPGEKPHKCQICGETFVAAVLLKTHERIHNQVQTFKCTHCDETYESIEQVMEHCQNFHTISVSFDQVQAAANKNQPEPTALVDVSTIMYGRKRKRGQFACNECDSVLTTAYSLQIHKRTHTGERPYACHLCDYRSICLSMLKRHVLTHSS 3865
+ C+ C +V L H IH+GEKP+ C C F+ + L RH HTGEKP+KC+ CG F+ +SL H H G+KP+KC CG+ F L H+RIH + +KC C + + + H Q HT + + K + + L + I G K R CNEC + +L H HTG++PY C+ C S L +H HS
Sbjct: 393 YKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATH-QVIHTGEKPYKCNECG--KVFTQNSHLANHRRIHTGEKPYR----CNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIHSG 613 HSP 8 Score: 117.857 bits (294), Expect = 1.200e-26 Identity = 67/200 (33.50%), Postives = 99/200 (49.50%), Query Frame = 2
Query: 515 FQCPHCPRILATKYSLQVHTLVHTGERPHACTLCSSRFTTPGDLRRHMVIHTGEKPYKCDVCDARFTQSGSLKGHSKLHPGEKPHKCEECGETFVAAVLLKAHKRFHSATQRFKCTHCDEMFSTVELVMEHCQVHHMISYEDPNNEVEDGITSVVDVS-----SILYGRKPSKRKSPCDICGKVLSSVYALQIHKRTHTG 1099
++C C + + L H VHTGE+P+ C C F+ L H IHTG+KPYKC+ C F + L H ++H GEKP+KC ECG+ F L H+ H+ + +KC C ++F+ + H ++H + E P E G V + ++ G KP K C+ CGKV + L H+R H+G
Sbjct: 421 YKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIH---TGEKPYRCNECGKAFSVRSTLTTHMAVHTGDKPYK----CNQCGKVFTQNSNLAKHRRIHSG 613 The following BLAST results are available for this feature:
BLAST of TCONS_00004868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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