TCONS_00049840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049840
Unique NameTCONS_00049840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049840 ID=TCONS_00049840|Name=TCONS_00049840|organism=Clytia hemisphaerica|type=transcript|length=247bp
CCAttgattttgttgttgataTTGAGAAAAACGACTTCCACCGAAATGGC
AAGTTTGTGCTTCTACATCCAAGTGCACTTACCAAAAGTATAGAACTTCG
AGAGGGTTCATTTAAGTATGATGACTATGTATATTGGTTCGTTGAAAATC
TACCAAAGGACATATTTTCAAGCCAACATAACTCAGCGATTGTTTTGgga
tttctttgaaaaaaagaatatctCGTGCAACTCTATTATCATAATCG
Run BLAST on NCBI

transcript from alignment at scaffold_166:350037..350283

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049840 ID=TCONS_00049840|Name=TCONS_00049840|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at scaffold_166:350037..350283 (Clytia hemisphaerica)
CGATTATGATAATAGAGTTGCACGagatattctttttttcaaagaaatcc
CAAAACAATCGCTGAGTTATGTTGGCTTGAAAATATGTCCTTTGGTAGAT
TTTCAACGAACCAATATACATAGTCATCATACTTAAATGAACCCTCTCGA
AGTTCTATACTTTTGGTAAGTGCACTTGGATGTAGAAGCACAAACTTGCC
ATTTCGGTGGAAGTCGTTTTTCTCAAtatcaacaacaaaatcaaTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031599XLOC_031599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049840-exon-scaffold_166-1491911889:350037..350283TCONS_00049840-exon-scaffold_166-1491911889:350037..350283Clytia hemisphaericaexon
TCONS_00049840-exon-scaffold_166-1510915933:350037..350283TCONS_00049840-exon-scaffold_166-1510915933:350037..350283Clytia hemisphaericaexon
TCONS_00049840-exon-scaffold_166-1575043694:350037..350283TCONS_00049840-exon-scaffold_166-1575043694:350037..350283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:350037..350283 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.16848	1.71356	7.23568	3.87083	5.42012	5.87449	3.25824	4.28368	6.9513	2.77654	15.0658	8.81883	10.8641	6.80492	9.40137	7.15481	1.55471	6.82498	2.76555	3.35238	0.863219	7.70403	0	5.88279	0	0.909192
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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