TCONS_00049781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049781
Unique NameTCONS_00049781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049781 ID=TCONS_00049781|Name=TCONS_00049781|organism=Clytia hemisphaerica|type=transcript|length=1511bp
ATGTATGGCACTTAAACGAAAGATTCATTCTGTAGGTTTTAGTGGTTGGA
TCCcttgatttgtttttgtttcttatattttttgtatTGGAGTCGTACAT
GTTTCATACCGATCTTTGGTTGTATCACATTGAAGTTATAACAGTACATG
TCGACAGATGTGATATGCCAGTTGGCTTATGACGGGAAACTGGAAGAATT
GCAAACGAAATTGAGGACCGATTTGAAACTGGCAAGCAAAAAGTTTCAGG
ACGAACGTCAACCATTACATTGGGCATGTTCAGGGGGCCATGACATTATC
GTGGAATATCTTCTAAATGTTTGCAATGCCCCCGTCGACGAACCCGATGA
CTCTGGTTGGACGCCTCTCATCATCGCATCTTCAGCTGGTCGTGAAAATA
TCGTCAAAATGCTGTTAGATAAAGACGCCAACCCAAACAATCTGACTGCC
ACCGGACAATCCGCCCTTCATTATGCCGCCTCTCGCAACAGATACAGGAT
AGCGGAACTGCTGGTTGCTTCAAACGCAGAATTGAACGTTCAAGATCAAA
CGTCATTCGCCACGCCTCTCCACAGGGCTGCTTCAAAAGGTAATTTGAAG
ATCGTGAAATTATTGTTGGAGAACGAGTGCAATCCTAACTTGAAAGACGC
TGAAGGAAATACTCCACTACATTTAGCATGCGAAGAAGAACGAACAGAAG
TAGCAGAAATACTGATCCAGTATGGTTCATCCATTACCTTATTCAATAAG
GAAGAGAAAACACCAATCGAACTCGCTCCTCCCTATTTACAAAGGAGACT
GGCGGAGAGTGAAGACAGTAAAAGTTGATTATGATTCTTTTGCACATGCG
TAGAAGAGAGGTTTGGCAgattttgtgttttcccttcGTAGATTTTATTA
GAAATGCTTCAGGGGTATTTGGTGTATTATTTCTGTGAAAATGCGGGAAG
TGAATTTATTTTTGGTGAGCAGAAGCAGGATCACCACCAATGAAGTATaa
ccccgaagggctagaatcgaatctccttggtaggatttgaagccaacaaa
tcctaccaaacttgcgcggccttgagcgacctgCCTGGTTTTTACGCAAA
TGACggattaaaactaaaatttaccgcttaatttcgaaaaaaatatcact
cgaaaacaaaggaattgctagattcaatccgtcataaaaaatacggCGTA
GATTTTAAAGGCTTCCagtttttcttgcctgagaaaggttagcgattcga
ttctagcccttcgggcttatacttcattgatcaCCACTACTGATTGAGTC
GTAATGACGTCATCCGTCCgttttaaccaatcagagaacatttctttaaa
agttttatttattttatgaattttttataaattcttATACGAAAATCATT
GTAAAAGTATGCTTTGTTCATATTATtcttaaaattgcattttttcgcca
ttttatttttttcgtaaaatttttgtgtttctatacatcagacaagaaaa
aagaaattgaa
Run BLAST on NCBI

transcript from alignment at scaffold_166:353731..364908+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049781 ID=TCONS_00049781|Name=TCONS_00049781|organism=Clytia hemisphaerica|type=transcript|length=11178bp|location=Sequence derived from alignment at scaffold_166:353731..364908+ (Clytia hemisphaerica)
ATGTATGGCACTTAAACGAAAGATTCATTCTGTAGGTTTTAGTGGTTGGA
TCCcttgatttgtttttgtttcttatattttttgtatTGGAGTCGTACAT
GTTTCATACCGATCTTTGGTTGTATCACATTGAAGTTATAACAGTGTAAG
TTTTTTTACATAAGTTAATAGTAAACTTGGTATCTATTGGTTTgtttgtt
ctttctttttcgcataaaattctcaattcttgacagaatgtttgattggt
ttgatttatatatttagaaaaatttaaaaaaatagaaaaaactgtataat
tataaaaatattagtgcctttttatgtttcatttttattttattttattt
agtattttcaacacttgctctccttgaggtcagatcacatatatatttat
gaaatgctTAAAACTATTGTAAGCCTCGTTTCCAGACTATTGTTAGCCTC
TTTTCCAGACTATTGTTAGCCTCGTTTCCAGACTGTTGTTAGCCTCGTTT
CCAGACGATTTTTAAGCCTCGTTTCCAGACTATTATTACTTAGATATCAA
ATACAATTGACTctctttaaaattcaattttcaagtgaccaaaaattttt
cttcaaattagagaaatattcgaattgcaAAGAGTATTTTAGACTACTTC
CCAGCCGAGAAAACCATTATTTTAGTTCGAACTACggaaagattcgaaaa
atagaagttcAAATTAGTGAGAGTTGACTGTAACAATGAAAGTATAGTTT
ACTTAATGTTTGCATTCTTTTTATGCAAGCTTCCAATTTTCAAATCCTAA
TTTTGATCAACCAAATGATACATAATGTGTGGAGTTATACATTTGAAAAC
GGGGccttttatgattttatttatCTTGTGAAAAAATGTATCCTGCCTGT
TTCGTTATGccctttttcaacaaaaacctcAACTTGATGCATTGTGTAAG
TGGTAAGTGGCTTTTGCTCCTTTGTTTCTATTAAATTGCAGATTTTAGAC
AATTCTAATCCGTCATTACTTTATGTTTTCCAACCTCGATCACTAGTAAA
GACTAGTGGTATGAATGTTGTCTTTAAGTTTTGTGCCAGTTGGGATCTTA
AATTTAAAAGCACCTAGATAAAACAACCTTGAAAGCTTTGCTTCCATCTG
AATTAACTTTATGTTTATGATTTTATTACTTTGGGTTAAAAGTTCAATAA
CCGTAGTTCAAAATAATATTGTACAACTAACATAAGTAATGGTTTTACTA
ACGAAATTCACCAGGAGACACCTACTGTTTTCAAAATCGCAATTAAAAAC
TGTTTCAATGTTTGGGGCACATAACTTTTGCCAGTATGGTTCTACTACCA
CTTGTAAGAACCCTGATTAATGTTCAACTGTTTTTTTTgctaataaattt
aaaaaagctcTTCTTTACATGTCATAATTTTCAGATTCTCATGTGAAACA
CTATAAGAGTAACGGTATTTTAAATCATAATTTAGGAGAGGCACATGTCG
TTATAACTGTTTGAATACTATAAGAACCCTATGTGACACATACTTTTAGC
AGTATGGCTTTTTCCTCAAACTACTGTTAGTTCACACAGAAAATATCAAG
ATTTGTCCACTAAAATTTTAATAGTAAATAGGTGTATGATCGACGTGtac
gcgttttttataagatttaaaaacataaagcttcaatgcccaaaatatcg
agaacaagttaagaacattttaaggctttgccgactctaaaacactcgat
ttcttaggaaaatggacaaaaatgatcaaaaactggacaaaaaggctcaa
aaaatggtgaaaataagaacatgttaagaacatttttaggcttgaaaact
caaaaagttaagaacatccgaatcctcaagaaagttttggatgttcttac
aaaaaaaacttgtactGTGATTGATTTTATGTAAActaaacaagaatcgc
aaaattgcgactaaatatttccttaaaaatgaaggtcattattgacatat
ataaaaaagtacacataataaagtatacatatatatttttccagaaagaa
ctggcatgttgtttgctttgttttggtgtttaaaaatatgtacttatcag
tcctaaaaaaaattacaaatttgaatataaggagggcaataagtctggtt
aaatgttacttcaTTCACCAGatttaaggattactgaaaaaatactgatg
cagatgaactaaactcaaaaactaaaactttacaataaatttacattacg
acaaagtaaaaatctatctttaatagcaacaaagaaaaaattgtggctca
aagttttaaagcatttaaatagctTGTAAACAGTAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
attatgcatggctgtatcgttgtttttatgctggagtacataattattca
acatggctgcctctttaaaaaaaagtctatttagttcagtaggtatagag
aattcaatatttgaaaacagacactgcattggtttacaagactagagaaa
gatgtccatccacacggttcatgaaaaaaataaagtatttatgaaaaaaa
ggtaatcaatacaccgtttaacaggtgTCGGTTGCGCACGCGCatgaaca
attttctattgttttgattttggcaaccacaagaaacttcactctccccc
gtaaaaaatggtaggtaaacatccagttctcataagaaaacccagcagta
ggtaaagaactccttacagtataatcataacttcttttcctcttgatgaa
tttttgtgaaattttcaggagagatacataaaattgtcattaatatcatg
ttcaaacatctaaaacattctcttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtgaaaagtcatttgctatcccatttgccatgagatatacaagt
caagaaatcaaacaataaccaacaaatcatgtctcttcactttcatgtca
catcgtgttatATGGGGTcagaaagtcaatccacaagaacagccatcttc
ctttattatggagtgttccaaaactattggtaggttgtttcgaagtaaag
aaacccacacagtttgatttatttttaagatttaacttggtgaaaacaaa
ctgcatctttctagcaaaaactcatgtttcaacctgctacataacaattg
ccagtcgggtctgccactaacatgtaatagttttattataaccgggcttg
agaatccgtaagggACTTttaacatatattatatatatagtttatcagtc
gactcgaatcatgatacattacttatacttcactgggtgcatttttcgct
gtgaaattaaaaacgggcGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNtggagaaagcccgttttaacaaatatttccctttt
ggaaaacgggaaatatttaaaaatttgatgCCAGCATAGTATTATTTTAT
TGACTTTGAATTACTGCTTTGGCAATACACATAAATATTTTGCTAAATTT
GAACTTGTTTTTCATGCTTTAGATTATGTTTATTTTATACTGAGCAAATA
AACCAATGTGTTGTATATGTCTCAacaggtttttttttctgatcaAAAAT
AATACGATTAAGTGTTTTTGTGGTTTGGGATCTTGGCATTAGACGGAAAT
TAAATCTCAAGATTTGTTATTGACAAAGTAATACTCGTGGCTTAGATTGG
ACTTGTGAGTGTATTCCTTTTCTTCTCTTAAAGGCCTCTTTTAGATAAAT
TTCGTCATAAAGAAATATTTGTGGAATCACCAATCTTAACATTGTAGAGC
TTAGGCATTATTTTAGGAGTAGAATTTCCTCCAGCCACTTATATATCTGA
AAAGTTGAACACAGAAATCTTTTTAGCTGTAATACCTATGGGCTGGATAG
GACAGATACAGATATACATATGATATGAGGCACTTTAATTGCTCTAAACA
GCTTTTAATAGTGTTTTGATTTGCTGTTTAATCCTTGATGTCCTTGATAT
GTTGAATATTAGACAGCTGGTAATTAAAATTATGTCATTATAGAGTGGTG
GAGTTTTTTAGGGCCTAATAATGGCACACTGTTTTATTTCGTTTAAAGTT
TCATGATTTTAAGAAGTTAAAGCAATTATCGGTAACGCTTTTGAATCGTG
TGTTCGAGTTTATAAGGATTTTGATCGGGCTCCATTACAGTTGCACGATT
CTTTTCTTGAGCAAGTGTTTTGCTCCTTGTCAAGCCCCAGAACATGCTGA
AGGCTTTATTGTTTTAAGATCCAATTCTGAGTCAAGATATTTTTAGAGTG
ATATGCTTTTAAAGATAGACTGATTATGGTCGAGTTTTGATTTAAAGTCA
CATGTTTTCCTCCCACAACTCTTGTGGTTTTAGTAGAATGTTTTCATTTA
CCTTGTTTTTGGAGCCTGTCTGTAAAAGTTGGTGTTTCATAATTCTTCAA
CGTGATCAAGGCTGAAAGTACCGGTCACATTTGAGAGATCATTTTGCGAT
TACAGAGTACACGCGTTTCTTGAGGTTATAAAGGTTGGATAATTCGATTT
GATGATAAAAATTCGtttcatttgtttgtttgtttgtttgtgttAACTTA
TATGATTTCGTTATCCTTTTGGAGCTCTGTTGTCAGACCGCGAAGCTTCT
CCGGTTTTTTTAGTGGAACAGAACTTCTTTATTCCtttgataaatctttt
tctcaaaatctcgTTTCAATTTGCGTGAGTAATTacaaaaattgaccaaa
atgaCTTCTTaatgggaactaattttgagaAAGTACAACTACAtctcttt
ttcaaaagttgTTTTATTGGTCTATCAACTTTGAATACATACAATTACAA
AGTTTTTACAGAACTTTCACTTATTGATCAATCTGTTTGTGGTAGTGTGT
ACAATTGCAGAGAATATTGGAAGCCAGCTACAACTTCACAAGCGATTGTC
GTGAACATTTTGTATTTGTTTAATCACAAGAGAGCTATAAACTGAGTTAA
TAAATTCGTAAGAAATAACGTTGTGACTGCCAGGAAGTCTTACACAATGA
GGAAACTTATAGGGCTATCATCGAGAACCAACCGTAAACTGATCAGTCCC
TCACCTTTCCTTGATTTAGACATGTCGACAGATGTGATATGCCAGTTGGC
TTATGACGGGAAACTGGAAGAATTGCAAACGAAATTGAGGACCGATTTGA
AACTGGCAAGCAAAAAGTTTCAGGTAAGTAATGTCTACTTTTTTAGTTTG
TGTAATTTTTAGTGGGTCTTTGGTGATCTCATCATAGTTTAAAGTCTAGA
TGTAGTGATAATACGCTGTTCTCGAGATCTTCAAAATCATCGTGTTTGAA
CACGGACGTTGGGAATTATAACTTTAGCAAGCGATGGCGATGGCAACAAA
ATTTGGAATAATTTTGTACACTATTGATAAGAGTGTTTTTAAATCTCTTC
GAAATACAATTTCCTTCAATAGAGAAAAATTCGTGTTTTTAGGAACTATA
TTTTATACCACTCTCCTGAGGATAAAAGAGACCGATGTtctagttcgaat
tagagagagttggctgaattttttagaaagataATTTATTCGCGAAGCGG
AAAGAAAGACAAGACACGGGTGTTTGGTGcaatttttatgacaaaaaacG
CGGACTTCCGTATGTAGATAACATTACAGAGATGTATTGAGTATCGAGAT
GCATCATAAGATTAATCTCTCATAAAAGTCCTCTTAAACGCTAAGCATCA
TTTCACAGTTGAAGTATTTCTCAAGAGATTACCTTGCTTAAAATAGTAAC
AATATCACTTTTGGACGATattattgatgttttttttgtctAAGGAGTAA
AATAAAATCGATAACAAATTTTCTTGGCATCGACAGTTATGATTCATTTT
TTCATTCGAGTTAAAACGATCAAGAAGTCAGAAAAATAGCAATTGCTTTA
TTATGTAGCTATAGTTTGCGAATGGACCAAAATTATATTCTGATTTTGAT
GTCAACTTTATGATTTCAGATAAACGCATAGTAAAGGTTAGACACGATCG
AATGTTGATAGATGTATACCCAAAAGAGCATGCGACACTGACATTCCTAC
CTTCGGCTACTTTGATGGGATTACATTTTCGCTGGGATTAAATTTGGTGG
TTTAGCTCATCTGcataatttgacattttttgagttttgtttaaaaatat
tttgcggataaggcctttccaaatttccattgggacttaaatttcgcgga
tgacacccaaatccgcgaaatttaattacaGCCAagttttatcccattaa
agtataaggTTTTGATTAATCTACCCTGTTTATTCAGAACTCCCGTATAA
TGGGTAGATATACCGGTACTATGATGAGGAGGATAAGCATAAATATCCCC
gtctaaataattatttttgtctCTTTGCAGGACGAACGTCAACCATTACA
TTGGGCATGTTCAGGGGGCCATGACATTATCGTGGAATATCTTCTAAATG
TTTGCAATGCCCCCGTCGACGAACCCGATGACGTAAGTTATTTCTTAATC
CTCAAAATATTTGTAATTGTTAACTGACTTGGTCATTTCGACAAGGGGTC
ACTATCCGTCccaaagaaaatgaaacaagagagtgggcagaaagtttcgt
gggcagaaagtttcgcgaagtcaaaaagtcgcgaaatttagcgaatttaa
gtttcgcgaattatggttttagccgaaatttcacagatagAACTTTCACG
AATTCATATAAAATTTACCTTTTTTGGTAACAAAAACttttcaggtttaa
tttcttacctggccgaaactttcgcgaaaaaggatcaaaatcgcgaaaaa
cgcgaaagtttctgtccgcgaaagtttctgcccttaaagtactTTAGAAG
GTAATTCCGCGAGAAATTCTGAAGAGTCGACTTTCAAAGGTTTATTTTCA
AGTGAAAAAGGATCTatctaaaaatctttctttcgtCATGAGCTTTTCTT
TAATATGTGGCACAGTTTCTGGTCTGACACATTTCGTTTTGATGATTGTG
AACTAAGCCAGGTTTATATCTCTTTTGTTAAGAATTTAACGAAAATACAT
AATTAAATCAAGTAAAAACAGACggatcgcgaaaattaatcttcgccaaa
ctaaaaatttgttttgctcTCCTGAAGTATTTCATTTctatttgtccatt
tttctaaataGTCTGGTTGGACGCCTCTCATCATCGCATCTTCAGCTGGT
CGTGAAAATATCGTCAAAATGCTGTTAGATAAAGACGCCAACCCAAACAA
TCTGACTGCCACCGGACAATCCGCCCTTCATTATGCCGCCTCTCGCAACA
GATACAGGGTAAAGGCCggactccactttcgcgcgaaatgggcgacagtt
ttcttaaccttttttgcctgaagaaaagattacgtcataaaaaagtttcg
cgcgaacaaaaaaaaaagttgaaggaagttctacttttttcatccgttac
gtcaatttcgaacaatggaattgcttcatttttcaaccgaccttTACAAC
AACGTCAAAATGTTTttgctcatgtcgcgcgaaagtggagaccgacctac
gtaaacacatttttataagcatgcaATCGAGGATTATAGGAAGGGCTGGT
TCGAAGAAAATACGTACAAAGATACATTCTTTTTTATATGTATCAAAATC
AATATCATTGCAATACTCGCTCTCAAATAGAATAATTACTTCAAACCACC
tacaggttttttttataagaacatccaaaaatttttgaagcctttggatg
acttttcagtttccagcgttttcctaaaaaaatggTGTTTTAGTGTCaat
taaagctttaaaatgttaatcttaaattttggccatcggagccttatatt
cttatataatttcttataaaaaagtgtaaaactTACTCTTTCCCTTTTTA
TATCCAAGGAACTTGATCATATCTTTCTATTATTTGTAGATAGCGGAACT
GCTGGTTGCTTCAAACGCAGAATTGAACGTTCAAGATCAAACGTCATTCG
CCACGCCTCTCCACAGGGCTGCTTCAAAGTAAGAccaaattcttttcttt
tcaaaaagatCCTCTTTTTGAACAAGCCTAGTTTGAGTGTATTTGGAAGC
AGGGAATTTTCCTAAAATCGGCTTGATTTTCAAGTGGTTTAGTCATTTTG
TCTGGACTCTTAACTGGATGTCTAAAGGGGAGTGAGGGGTGCTTTGGTTC
TATAGGTGTccgtgaaattttctggttTCGAATTGAGGCCTTATAAGTGA
AAAGCTGCAGAGTTCAGTAAATTCTATAATatacaatgaaaaaagaattc
atATTCATATTCGGAGTCGTAGCCGCGAAGTTTCGGTTTCGGGGAATGAG
ATTGGGaaaattttaacctttttaAGGGTTTTGCCTTAAATATGCTCAAA
TGCATTAgaatagtttttcttttcatttaagAGGTAATTTGAAGATCGTG
AAATTATTGTTGGAGAACGAGTGCAATCCTAACTTGAAAGACGCTGAAGG
AAATACTCCACTGTAAGTCATTAGTTTGTTTTTGAAAGGGAAGAATGTGG
TATTGACCTCGAAACAGGGGGATTTGGATCAAGTTAAAAAGAGTGGAATG
ATTTCAAATGTCTGTATATATTTGGTGTGCATTTGGTATTATTTTATACT
GGCAGGCTCGACCCGATCCTATTTTAACACAAGGGTTAAAAGGTGTAAGG
CTCCCCTCCCCATTTAAAGGTTTATCACAGAGCCTCGATCTGCTCCAAAA
AGATGAGGTGTTCTTACGGAACATTGTTATCGGGATCTGCTTATAGATTA
TAAATATATAAggtttcaaaatattgttaaaatctAAGTTAATTTTACAT
CTGTGATATTGGTTTTGTGTTATTTTCTAATAGCCATGGgttcaaaaatc
gaaaaccaaaaagaagaataatttttagaaaatggtgctacttccaaaga
ccctcattagcatattttcattgcgctgaagcgatttcgaggggcTAAAA
CCGGCTGGAATGTGTATTTTGGTCACAAGACCGGTTTTTAGGGCTCTAAA
GTTAGCTattttggcaatctctcattaactcaactttttttatttccagA
CATTTAGCATGCGAAGAAGAACGAACAGAAGTAGCAGAAATACTGATCCA
GTATGGTTCATCCATTACCTTATTCAATAAGGTGTGTATAAACTTAGCTT
GTGTGTTTTGAAATACGAAGGTTGGCTAGCCAGCCTTTTGTGATGTGAAA
AACTTCCAAAGAAAATGGTAGTTGGTACTGCACTTGAAATACAAAATATA
TTACTGTCTTGTTAGAAAGattatttttgagttttctgaaaaatcatcaa
aatatgccttgtccggggggtcaactgatgcttgtccgggtggtaaaacc
cgttgtccggggggaccaaaagtcactttgtccggggggtaaatcactga
aaattgttatatcctccatccccatattcaaattttttctagaaaatccc
atttcatattttaattttcgaaaatttaaagccTTTGTTTACCTCAATTC
ATTTCTTTTATCCGCAGGAAGAGAAAACACCAATCGAACTCGCTCCTCCC
TATTTACAAAGGAGACTGGCGGAGAGTGAAGACAGTAAAAGTTGATTATG
ATTCTTTTGCACATGCGTAGAAGAGAGGTTTGGCAgattttgtgttttcc
cttcGTAGATTTTATTAGAAATGCTTCAGGGGTATTTGGTGTATTATTTC
TGTGAAAATGCGGGAAGTGAATTTATTTTTGGTGAGCAGAAGCAGGATCA
CCACCAATGAAGTATaaccccgaagggctagaatcgaatctccttggtag
gatttgaagccaacaaatcctaccaaacttgcgcggccttgagcgacctg
CCTGGTTTTTACGCAAATGACggattaaaactaaaatttaccgcttaatt
tcgaaaaaaatatcactcgaaaacaaaggaattgctagattcaatccgtc
ataaaaaatacggCGTAGATTTTAAAGGCTTCCagtttttcttgcctgag
aaaggttagcgattcgattctagcccttcgggcttatacttcattgatca
CCACTACTGATTGAGTCGTAATGACGTCATCCGTCCgttttaaccaatca
gagaacatttctttaaaagttttatttattttatgaattttttataaatt
cttATACGAAAATCATTGTAAAAGTATGCTTTGTTCATATTATtcttaaa
attgcattttttcgccattttatttttttcgtaaaatttttgtgtttcta
tacatcagacaagaaaaaagaaattgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031558XLOC_031558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049781-exon-scaffold_166-1491911889:353731..353875TCONS_00049781-exon-scaffold_166-1491911889:353731..353875Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1510915933:353731..353875TCONS_00049781-exon-scaffold_166-1510915933:353731..353875Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1575043694:353731..353875TCONS_00049781-exon-scaffold_166-1575043694:353731..353875Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1491911889:359650..359753TCONS_00049781-exon-scaffold_166-1491911889:359650..359753Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1510915933:359650..359753TCONS_00049781-exon-scaffold_166-1510915933:359650..359753Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1575043694:359650..359753TCONS_00049781-exon-scaffold_166-1575043694:359650..359753Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1491911889:360961..361062TCONS_00049781-exon-scaffold_166-1491911889:360961..361062Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1510915933:360961..361062TCONS_00049781-exon-scaffold_166-1510915933:360961..361062Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1575043694:360961..361062TCONS_00049781-exon-scaffold_166-1575043694:360961..361062Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1491911889:361742..361888TCONS_00049781-exon-scaffold_166-1491911889:361742..361888Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1510915933:361742..361888TCONS_00049781-exon-scaffold_166-1510915933:361742..361888Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1575043694:361742..361888TCONS_00049781-exon-scaffold_166-1575043694:361742..361888Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1491911889:362520..362608TCONS_00049781-exon-scaffold_166-1491911889:362520..362608Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1510915933:362520..362608TCONS_00049781-exon-scaffold_166-1510915933:362520..362608Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1575043694:362520..362608TCONS_00049781-exon-scaffold_166-1575043694:362520..362608Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1491911889:363012..363092TCONS_00049781-exon-scaffold_166-1491911889:363012..363092Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1510915933:363012..363092TCONS_00049781-exon-scaffold_166-1510915933:363012..363092Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1575043694:363012..363092TCONS_00049781-exon-scaffold_166-1575043694:363012..363092Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1491911889:363680..363761TCONS_00049781-exon-scaffold_166-1491911889:363680..363761Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1510915933:363680..363761TCONS_00049781-exon-scaffold_166-1510915933:363680..363761Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1575043694:363680..363761TCONS_00049781-exon-scaffold_166-1575043694:363680..363761Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1491911889:364148..364908TCONS_00049781-exon-scaffold_166-1491911889:364148..364908Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1510915933:364148..364908TCONS_00049781-exon-scaffold_166-1510915933:364148..364908Clytia hemisphaericaexon
TCONS_00049781-exon-scaffold_166-1575043694:364148..364908TCONS_00049781-exon-scaffold_166-1575043694:364148..364908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:353731..364908 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.517577	0	0.616079	0	0	0	1.29314	4.34597e-08	0.90639	1.39763	0.37627	0	16.0418	15.6198	0.810762	1.31223	12.1695	12.4066	24.1801	15.6771	2.53861	3.88761	1.18099	1.581	0.990618	1.93077	7.94199	3.7883	0	0
Blast
[Close]
BLAST of TCONS_00049781 vs. Swiss-Prot (Human)
Match: PSD10 (26S proteasome non-ATPase regulatory subunit 10 OS=Homo sapiens GN=PSMD10 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.212e-66
Identity = 111/224 (49.55%), Postives = 154/224 (68.75%), Query Frame = 1 
Query:  148 MSTDVICQLAYDGKLEELQTKLRTDLKLASKKFQDERQPLHWACSGGHDIIVEYLLNVCNAPVDEPDDSGWTPLIIASSAGRENIVKMLLDKDANPNNLTATGQSALHYAASRNRYRIAELLVASNAELNVQDQTSFATPLHRAASKGNLKIVKLLLENECNPNLKDAEGNTPLHLACEEERTEVAEILIQYGSSITLFNKEEKTPIELAPPYLQ---RRLAES 810
            +S  ++C LAY GKLEEL+  +  D  LA++  QD R  LHWACS GH  IVE+LL +   PV++ DD+GW+PL IA+SAGR+ IVK LL K A  N +   G + LHYAAS+NR+ IA +L+   A  + +D    AT +HRAA+KGNLK++ +LL  + + N++D EGNTPLHLAC+EER E A++L+  G+SI + NKEEKTP+++A   L    +R+ E 
Sbjct:    5 VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE-ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVEG 226
The following BLAST results are available for this feature:
BLAST of TCONS_00049781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSD101.212e-6649.5526S proteasome non-ATPase regulatory subunit 10 OS... [more]
back to top