TCONS_00049803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049803
Unique NameTCONS_00049803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049803 ID=TCONS_00049803|Name=TCONS_00049803|organism=Clytia hemisphaerica|type=transcript|length=1241bp
GCATCATATAGCATCAGCTCAATTATTTTGTCTTATTGTTTTATATGACC
ACATATTGTTTAATCGgtttatttttcatgatataTAAAGTCTGACCTTA
GATATGACAGAAAAATCAGTGAGAACGAAAGAAGGAAGCATAAGATTGGT
TTGCAAGTCAAAGCGCCTCGAAACAAAGTGGACGACGCTACAGATACAGA
TACAGTGCTAACAAGATGCAGatattggtcaaaattttacCTTTCTTATT
CCTTGTAACTCAACAGGCTCAAGGGAAAAGTATAAGCCAAGCTGGTCTAG
ACCTTATTAAAAGATTCGAAGGTCTTCGCTTGACAGCTTACCAGGATGCA
GTCGGAGTTTGGACTATTGGTTACGGACATACCAAAGGTGTCCGGGCAGG
TCAAACAATTACTGCGGAACAAGCAGAACTCTTTCTCCGTCAAGACGTAC
GATCAGCAGAAAATGACGTTGAGAAATCCGTCAAAGTTTGgataaatcaa
aatcaatatgATGCACTTGTTTCATGGACCTTCAATCTAGGTGGTACAAA
TTTAAGGAAGTCTACCATGTTGAAAAAACTGAATGCTGGTGATTTTGACC
GCGTTCCATGTGAAATGATTCGATGGGTTTATGCTGGTGGTAAAAAATTG
CCTGGATTGGTGAAAAGAAGATACGCCGAAGCTACTTTGTTCAACGATGG
TCCGTTTTTTTGTTAATGTTTCACGCTTTTTTGTAAGCACATTCAAAGAA
CCTTTGGAtggtcttaacttttttagttttaagcctttgAGGGGTTCTTA
ACAggttcttatttttacaattttgtgagtattttagtccatttttctaa
gaaatcagATCAGGAGTTAAAGAGTccgtaaaaatttaaaatgttccTCT
TATCATTTTGTCCATCATACTTTAGCCACATGTTCacatataccttaagg
gaagaaattttcgcgagaagaaattttcgcggaagaaattttggcggaat
ttaatttcgcgaatttgggcataattcgcgaaattaaattccgcgaaaca
caccaaaatggctaaaccgcgaaattaaattccgtgaaaatttcttctcg
cgaaaatttcttcccttaaggtagtttattcttatgaaaaaaacgtgCAT
TATACAAAACTTgtaattttatgcatttttgtaGAATAAAAATTTGGTTT
TACTTACGAAagaatagtcgaacgtgcgcaacgcacttggc
Run BLAST on NCBI

protein sequence of TCONS_00049803-protein

>TCONS_00049803-protein ID=TCONS_00049803-protein|Name=TCONS_00049803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MQILVKILPFLFLVTQQAQGKSISQAGLDLIKRFEGLRLTAYQDAVGVWT
IGYGHTKGVRAGQTITAEQAELFLRQDVRSAENDVEKSVKVWINQNQYDA
LVSWTFNLGGTNLRKSTMLKKLNAGDFDRVPCEMIRWVYAGGKKLPGLVK
RRYAEATLFNDGPFFC
Run BLAST on NCBI

transcript from alignment at scaffold_166:367510..371146-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049803 ID=TCONS_00049803|Name=TCONS_00049803|organism=Clytia hemisphaerica|type=transcript|length=3637bp|location=Sequence derived from alignment at scaffold_166:367510..371146- (Clytia hemisphaerica)
GCATCATATAGCATCAGCTCAATTATTTTGTCTTATTGTTTTATATGACC
ACATATTGTTTAATCGGTTTATTTTTCATGATATATAAAGTCTGACCTTA
GATATGACAGAAAAATCAGTGAGAACGAAAGAAGGAAGCATAAGATTGGT
TTGCAAGTCAAAGCGCCTCGAAACAAAGTGGACGACGCTACAGATACAGA
TACAGTGCTAACAAGATGCAGATATTGGTCAAAATTTTACCTTTCTTATT
CCTTGTAACTCAACAGGCTCAAGGTATGTTATTGTTTCCCTCTTTAAGAA
TGATGTTAGAATCTTAATAAGTTCTACCTACAATTTCGTGTCTTTCTCCT
TATGAATGGGGTGAATTAAAACTGGTTAGTGAATATTTGTGACCAATATT
ACAAAGATTTAACTATAATTCTAAGTTAAAATTTTTCTAAGTCGGGTTTA
AAGTTTGAAGTTGAACCACCCTACAGTACCAAATTTCTCCGCGAAACATA
CAAACACATGGCAAGATTTTTGAAAAGGGGCAATATCCCCGGTGGGTTGG
TGGTTCCTGGGGGGGCCAAATCTTCGGTCTTTGAGCTCGGACATCTTTTC
CACTTTTCGAGTCCATTATAGAACAGTCTAAACATTCACTGGAGTCTCCA
TATAATTGGAACCCCTATAACATTCACTGGAGTCTCCATATAATTGGAAG
CTCTATAGAANATAACATTCACTGGAGTCTCAATATAATTCGAACCTCTA
TAACATTCACTGGAGTCTCCATATAATTCGAACCTCTATAACATTCACTG
GAGTCTCAATATAATTCGAACCTCTATAACATTCACTGGAGTCTCCATAT
AATTCGAACCTCTATAACATTCACTGGAGTCTCAATATAATTCGAACCTC
TATAACATTCACTGGAGTCTCCATATAATTCGAACCTCTATAACATTCAC
TGGAGTCTCAATATAATTCGAACCTCTATAACATTCACTGGAGTCTCCAT
ATAATTCGAACCTCTATAACATTCACTGGAGTCTCAATATAATTCGAACC
TCTATAACATTCACTGGAGTCTCCATATAATTCGAACCTCTATAACATTC
ACTGGAGTCTCAATATAATTCGAACCTCTATAACATTCACTGGAGTCTCC
ATATAATTCGAACCTCTATAACATTCACTGGAGTCTCAATATAATTCGAA
CCTCTATAACATTCACTGGAGTCTCCATATAATTCGAACCTCTATAACAT
TCACTGGAGTCTCAATATAATTCGAACCTCTATAACATTCACTGGAGTCC
CCATTTAATTCGAACCTCTATAACATTCACCAGAGTCCCCATATAATTCG
AACCTCTATAACATTCACTGGAGTCTCCATTTAATTCGAACCTCTATAAC
ATTCACTGGAGTCTCCATATAATTCGAACCTCTATAACATTCACTGGAGT
CTCCATTTAATTCGAACCTCTATAACATTCACTGGAGTCTCAATATAATT
CGAACCTCTATAACATTCACTGGAGTCTCCATATAATTCGAACCTCTATA
ACATTCACTGGAGTCTCCATTTAATTCGAACCTCTATAACATTCACTGGA
GTCTCAATATAATTCGAACCTCTATAACATTCACTGGAGTCTCCATATAA
TTCGAACCTCTATAACATTCACTGGAGTCTCCATTTAATTCGAACCTCTA
TAACATTCACCAGAGTCCCCATATAATTCGAACCTCTATAACATTCACCA
GAGTCCCCATATAATTCGAACCTCTATAACATTCACTGGAGTCTCCATAT
AATTCGAACCTCTATAACATTCACTGGAGTCTCCATATAATTCGAACCTC
TATAACATTCACTGGAGTCTCCAGGGAAAGGGAAAGCCTCGTAAAATACT
CTACTATTTGAATCTTTCTCTAATTCAAAGAACATTTTTTGTCCCTTGAA
GATCGAATTAGAGAAACAACTGTATATGTATATGTCCCGTGTTTGTTCGA
GTTTAATGTAGTAACTCCATAGAGCAGTGGACTAGCGATATTCAAAAGTC
AAGTTTGATTCTCATTCTAGTCCTCAGTTTAGTTTACTAATAAACTAATG
TCTTGTAGCTATTCCTGTGTAAGCACTCTCCTTGACGATGGTATGAATTT
CCACTGATGTAACTTTGAACTTGATTACAGGGAAAAGTATAAGCCAAGCT
GGTCTAGACCTTATTAAAAGATTCGAAGGTCTTCGCTTGACAGCTTACCA
GGATGCAGTCGGAGTTTGGACTATTGGTTACGGACATACCAAAGGTGTCC
GGGCAGGTCAAACAATTACTGCGGAACAAGCAGAACTCTTTCTCCGTCAA
GACGTACGATCAGCAGAAAATGACGTTGAGAAATCCGTCAAAGTTTGGAT
AAATCAAAATCAATATGATGCACTTGTTTCATGGACCTTCAATCTAGGTA
AGAAACCTACACACTTTTTTATGAATGAAATCAGTTACTAAGGCTCTAGC
CCTGAAGTCAGCCGAATATTTTTTGACACGTTTGGTAAAGGAAAAGTTTT
ATAAATAAACCCAACAGAGAAATGGTGTCTCTCGACCCAGTGAGTATATA
TAAGTCCGTGCCACCTAGAACGTCCTGAGAAATGAAATATGCGAGAAGAT
TCTCACAAAAATTAATCAATATGGAAATGTTGGTATAAAAAGATTGAAGA
CTGAACTTTTATGAATAGAGTATAGCATAGCATGTTTTGAAAGTGAGGTA
AGCGGCGAGGTGTTCATGACATTATTTATGAAAAGGTTTTCTTTCAGGCG
AGATATAACTAATTTTCGTGGTATCTTATTTCGGTGTTTTTTTGTGTTTA
TCGCGAAAATTAGTTTCGTAAAACACCAAGTAAATTGAAATTTTGACAAA
AATTTGGTTCTTTTAAAGCATCTCTGTTGTTCTTAGGTGGTACAAATTTA
AGGAAGTCTACCATGTTGAAAAAACTGAATGCTGGTGATTTTGACCGCGT
TCCATGTGAAATGATTCGATGGGTTTATGCTGGTGGTAAAAAATTGCCTG
GATTGGTGAAAAGAAGATACGCCGAAGCTACTTTGTTCAACGATGGTCCG
TTTTTTTGTTAATGTTTCACGCTTTTTTGTAAGCACATTCAAAGAACCTT
TGGATGGTCTTAACTTTTTTAGTTTTAAGCCTTTGAGGGGTTCTTAACAG
GTTCTTATTTTTACAATTTTGTGAGTATTTTAGTCCATTTTTCTAAGAAA
TCAGATCAGGAGTTAAAGAGTCCGTAAAAATTTAAAATGTTCCTCTTATC
ATTTTGTCCATCATACTTTAGCCACATGTTCACATATACCTTAAGGGAAG
AAATTTTCGCGAGAAGAAATTTTCGCGGAAGAAATTTTGGCGGAATTTAA
TTTCGCGAATTTGGGCATAATTCGCGAAATTAAATTCCGCGAAACACACC
AAAATGGCTAAACCGCGAAATTAAATTCCGTGAAAATTTCTTCTCGCGAA
AATTTCTTCCCTTAAGGTAGTTTATTCTTATGAAAAAAACGTGCATTATA
CAAAACTTGTAATTTTATGCATTTTTGTAGAATAAAAATTTGGTTTTACT
TACGAAAGAATAGTCGAACGTGCGCAACGCACTTGGC

Coding sequence (CDS) from alignment at scaffold_166:367510..371146-

>TCONS_00049803 ID=TCONS_00049803|Name=TCONS_00049803|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_166:367510..371146- (Clytia hemisphaerica)
GTGGTACAAATTTAAGGAAGTCTACCATGTTGAAAAAACTGAATGCTGGT
GATTTTGACCGCGTTCCATGTGAAATGATTCGATGGGTTTATGCTGGTGG
TAAAAAATTGCCTGGATTGGTGAAAAGAAGATACGCCGAAGCTACTTTGT
TCAACGATGGTCCGTTTTTTTGTTAAGGAAAAGTATAAGCCAAGCTGGTC
TAGACCTTATTAAAAGATTCGAAGGTCTTCGCTTGACAGCTTACCAGGAT
GCAGTCGGAGTTTGGACTATTGGTTACGGACATACCAAAGGTGTCCGGGC
AGGTCAAACAATTACTGCGGAACAAGCAGAACTCTTTCTCCGTCAAGACG
TACGATCAGCAGAAAATGACGTTGAGAAATCCGTCAAAGTTTGGATAAAT
CAAAATCAATATGATGCACTTGTTTCATGGACCTTCAATCTAGATGCAGA
TATTGGTCAAAATTTTACCTTTCTTATTCCTTGTAACTCAACAGGCTCAA
GGTGGTACAAATTTAAGGAAGTCTACCATGTTGAAAAAACTGAATGCTGG
TGATTTTGACCGCGTTCCATGTGAAATGATTCGATGGGTTTATGCTGGTG
GTAAAAAATTGCCTGGATTGGTGAAAAGAAGATACGCCGAAGCTACTTTG
TTCAACGATGGTCCGTTTTTTTGTTAAGGAAAAGTATAAGCCAAGCTGGT
CTAGACCTTATTAAAAGATTCGAAGGTCTTCGCTTGACAGCTTACCAGGA
TGCAGTCGGAGTTTGGACTATTGGTTACGGACATACCAAAGGTGTCCGGG
CAGGTCAAACAATTACTGCGGAACAAGCAGAACTCTTTCTCCGTCAAGAC
GTACGATCAGCAGAAAATGACGTTGAGAAATCCGTCAAAGTTTGGATAAA
TCAAAATCAATATGATGCACTTGTTTCATGGACCTTCAATCTAGATGCAG
ATATTGGTCAAAATTTTACCTTTCTTATTCCTTGTAACTCAACAGGCTCA
AGGTGGTACAAATTTAAGGAAGTCTACCATGTTGAAAAAACTGAATGCTG
GTGATTTTGACCGCGTTCCATGTGAAATGATTCGATGGGTTTATGCTGGT
GGTAAAAAATTGCCTGGATTGGTGAAAAGAAGATACGCCGAAGCTACTTT
GTTCAACGATGGTCCGTTTTTTTGTTAAGGAAAAGTATAAGCCAAGCTGG
TCTAGACCTTATTAAAAGATTCGAAGGTCTTCGCTTGACAGCTTACCAGG
ATGCAGTCGGAGTTTGGACTATTGGTTACGGACATACCAAAGGTGTCCGG
GCAGGTCAAACAATTACTGCGGAACAAGCAGAACTCTTTCTCCGTCAAGA
CGTACGATCAGCAGAAAATGACGTTGAGAAATCCGTCAAAGTTTGGATAA
ATCAAAATCAATATGATGCACTTGTTTCATGGACCTTCAATCTAGATGCA
GATATTGGTCAAAATTTTACCTTTCTTATTCCTTGTAACTCAACAGGCTC
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031572XLOC_031572Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049803-proteinTCONS_00049803-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049803-exon-scaffold_166-1575043694:370874..371146TCONS_00049803-exon-scaffold_166-1575043694:370874..371146Clytia hemisphaericaexon
TCONS_00049803-exon-scaffold_166-1575043694:368700..368966TCONS_00049803-exon-scaffold_166-1575043694:368700..368966Clytia hemisphaericaexon
TCONS_00049803-exon-scaffold_166-1575043694:367510..368210TCONS_00049803-exon-scaffold_166-1575043694:367510..368210Clytia hemisphaericaexon
TCONS_00049803-exon-scaffold_166-1510915933:370874..371146TCONS_00049803-exon-scaffold_166-1510915933:370874..371146Clytia hemisphaericaexon
TCONS_00049803-exon-scaffold_166-1510915933:368700..368966TCONS_00049803-exon-scaffold_166-1510915933:368700..368966Clytia hemisphaericaexon
TCONS_00049803-exon-scaffold_166-1510915933:367510..368210TCONS_00049803-exon-scaffold_166-1510915933:367510..368210Clytia hemisphaericaexon
TCONS_00049803-exon-scaffold_166-1491911889:370874..371146TCONS_00049803-exon-scaffold_166-1491911889:370874..371146Clytia hemisphaericaexon
TCONS_00049803-exon-scaffold_166-1491911889:368700..368966TCONS_00049803-exon-scaffold_166-1491911889:368700..368966Clytia hemisphaericaexon
TCONS_00049803-exon-scaffold_166-1491911889:367510..368210TCONS_00049803-exon-scaffold_166-1491911889:367510..368210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:367510..371146 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.676396	0.506895	0.871974	1.33087	1.44242	1.28081	16.5991	15.4262	55.7454	58.0539	48.9827	34.4089	104.646	79.1857	19.3951	20.1201	5.73244	5.59573	145.834	210.145	23.2833	20.9651	54.3425	65.3061	202.887	111.851	151.761	246.23	63.7857	54.346
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023347Lysozyme_dom
IPR002196Glyco_hydro_24
IPR033907Endolysin_autolysin
IPR023346Lysozyme-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003796lysozyme activity
Vocabulary: Biological Process
TermDefinition
GO:0016998cell wall macromolecule catabolic process
GO:0009253peptidoglycan catabolic process
GO:0044659cytolysis by virus of host cell
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016998 cell wall macromolecule catabolic process
biological_process GO:0044659 cytolysis by virus of host cell
biological_process GO:0009253 peptidoglycan catabolic process
molecular_function GO:0003796 lysozyme activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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