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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053378 ID=TCONS_00053378|Name=TCONS_00053378|organism=Clytia hemisphaerica|type=transcript|length=931bp
GGCGAAGATAAAAATTCTAAGCTCAAAAAATCCAATGGCATGGGCTCGGG
GGTTTTGGTACATCGAATTTGGAATacggatgaaatcaaagtcaatttcc
cagtagaACTGAAATTTCAGGGGTATATTttctaccggggacgaaatctt
GACCAAGTTTTTTTAgtcgggtctgtgacacaggggtgtacagTACGAAT
ACGAACTACTTATTTAGAAATTTATGTAAATATTACCACTGAAATGTAAC
AAAAACACCGAGCGTCTCTTCGACtgttcttataagcatatggtTTTTCC
AACAAGAACAACAGAAATCTCCAGGGCTGCACTTTGAcagaattttatca
aacaaaaatttttataaaagtctTTAATCGGATACTTCAAAAAACATTCT
CAAGTCAagttaacattttttttatttaaccaatTAACTAATTAATTTAG
TCTGGTACCTGCATAGAGAGCGTTGTCAGTGACCTCCAAGTTTCAACTGA
GATATTTATTCCGCATAAAGAATCAATTTTTCCAATtcactctttttata
agaaccagtaatttTGATTAAGACTCGGTTGTTTTATTCCTTTTATTTGG
AAGTTGGAAGTTAGAgcctaaatttttttcttatccACTCTTATTTTCAG
AGGTAAATTGAGATACATTACGCTTTGTGTCCAATTTATACTACTTTGAC
TCTTTATTTGCTTAAAATACAGCTATTTCAGGCTCAGCTTTGTGCTTAAA
TATAAGTGTTGTTCTAATAAAACCAGTctattacacccctgtttctCAAG
CCTGCTTGGACCCCAGCCCCCTGGAaaattaaagggacataacagtactt
gcgaaatttgtaaacaaactgtatgcagcggatacaaaatcaaaacaaat
gtcacatgtcaaaataaaaaatcaaaccaaN Run BLAST on NCBI transcript from alignment at scaffold_228:580692..581622 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053378 ID=TCONS_00053378|Name=TCONS_00053378|organism=Clytia hemisphaerica|type=transcript|length=931bp|location=Sequence derived from alignment at scaffold_228:580692..581622 (Clytia hemisphaerica)
Nttggtttgattttttattttgacatgtgacatttgttttgattttgtat
ccgctgcatacagtttgtttacaaatttcgcaagtactgttatgtccctt
taatttTCCAGGGGGCTGGGGTCCAAGCAGGCTTGagaaacaggggtgta
atagACTGGTTTTATTAGAACAACACTTATATTTAAGCACAAAGCTGAGC
CTGAAATAGCTGTATTTTAAGCAAATAAAGAGTCAAAGTAGTATAAATTG
GACACAAAGCGTAATGTATCTCAATTTACCTCTGAAAATAAGAGTggata
agaaaaaaatttaggcTCTAACTTCCAACTTCCAAATAAAAGGAATAAAA
CAACCGAGTCTTAATCAaaattactggttcttataaaaagagtgaATTGG
AAAAATTGATTCTTTATGCGGAATAAATATCTCAGTTGAAACTTGGAGGT
CACTGACAACGCTCTCTATGCAGGTACCAGACTAAATTAATTAGTTAatt
ggttaaataaaaaaaatgttaactTGACTTGAGAATGTTTTTTGAAGTAT
CCGATTAAagacttttataaaaatttttgtttgataaaattctgTCAAAG
TGCAGCCCTGGAGATTTCTGTTGTTCTTGTTGGAAAAaccatatgcttat
aagaacaGTCGAAGAGACGCTCGGTGTTTTTGTTACATTTCAGTGGTAAT
ATTTACATAAATTTCTAAATAAGTAGTTCGTATTCGTActgtacacccct
gtgtcacagacccgacTAAAAAAACTTGGTCaagatttcgtccccggtag
aaAATATACCCCTGAAATTTCAGTtctactgggaaattgactttgatttc
atccgtATTCCAAATTCGATGTACCAAAACCCCCGAGCCCATGCCATTGG
ATTTTTTGAGCTTAGAATTTTTATCTTCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053378-exon-scaffold_228-1491911889:580692..581622 | TCONS_00053378-exon-scaffold_228-1491911889:580692..581622 | Clytia hemisphaerica | exon |
| TCONS_00053378-exon-scaffold_228-1510915933:580692..581622 | TCONS_00053378-exon-scaffold_228-1510915933:580692..581622 | Clytia hemisphaerica | exon |
| TCONS_00053378-exon-scaffold_228-1575043694:580692..581622 | TCONS_00053378-exon-scaffold_228-1575043694:580692..581622 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:580692..581622 . |
Blast
The following BLAST results are available for this feature:
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