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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049808 ID=TCONS_00049808|Name=TCONS_00049808|organism=Clytia hemisphaerica|type=transcript|length=5505bpRun BLAST on NCBI transcript from alignment at scaffold_166:372693..399334- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049808 ID=TCONS_00049808|Name=TCONS_00049808|organism=Clytia hemisphaerica|type=transcript|length=26642bp|location=Sequence derived from alignment at scaffold_166:372693..399334- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049808 vs. Swiss-Prot (Human)
Match: CAC1I (Voltage-dependent T-type calcium channel subunit alpha-1I OS=Homo sapiens GN=CACNA1I PE=1 SV=1) HSP 1 Score: 478.789 bits (1231), Expect = 2.066e-138 Identity = 285/603 (47.26%), Postives = 401/603 (66.50%), Query Frame = 2
Query: 2030 PNFTSYRNNWSFYLFPVDCRFRRTMIRITASKWFDAXXXXXXXXXXXXXXXENPHKKMSPSLRYLIDTSMFMMTWIFFIEMMIKVIADGFISGHGSYLRCGWNVLDFMLVLTSIVDVFITLYFSGTKAQHIEIIKGMRVLRATRALRPLRMIRKAPGLKLVVQTLLFSLKPIGNTVLIATIFFIVFGILGVQQLKGKFYYCFGVTANLVRNKTECIQHPDGVWTNYQYNFDNLLEALMTLFVVSTKDGWIDIMRRGIDARGVDLAPRTNYAQWRILYFVSFLLIGGFLVLNMIVGVVVENFQKCQELQDIQSNKARNVLQKWKKKIEQ---RRNNYWREYPPWRKRIYKLCTSASWDVAITSVICSNVVIMSLEHYQMSEEFHILLEVCNIIFTTTYICEAVLLMVALSPRRYVKNKWYCXXXXXXXXXXXXXXXXYLNVHIS-NVNPAAIKAMRLLRVIRALKLLKMAKGLRFLLNHVAETIPQVTNLALLFSLLFFVYSCLGIQLFGTLECTNRFPCAGLGRHANFKTLGNSMLTLFRIATGDNWSGIMRDTLRSSCDNSIQCTSNCCVSRYVAPLFFVSFVLFAQFVLVNIVIAVLMKHL 3826
P++ R +WS YLF + RFR I A K FD ++L I +C+ +ALE P + + R + S ++ T IF EM +KV++ G G +YLR WNVLD LV SI+D+ ++L +G +I+ +RVLR R LRPLR+I +APGLKLVV+TL+ SLKPIGN VLI FFI+FGILGVQ KGKFY+C GV + N+++C+ + W +++YNFDNL +ALM+LFV+++KDGW++IM G+DA VD P TN+ W +LYF+SFLLI F VLNM VGVVVENF KC++ Q+ + + R + + + ++ +R Y+ Y R I+ +CTS D+ IT +IC NVV MSLEHY L+ CN +FTT ++ EAVL +VA RR+ K++W DL +V++S++ I + + ++ + +NP I+ MR+LR+ R LKLLKMA G+R LL+ V + +PQV NL LLF LLFF+Y+ LG++LFG L C + PC G+ RHA F+ G + LTLF+++TGDNW+GIM+DTLR + C S+ ++V+PL+FVSFVL AQFVL+N+V+AVLMKHL
Sbjct: 1139 PDWCEVREDWSVYLFSPENRFRVLCQTIIAHKLFDYVVLAFIFLNCITIALERPQIEAGSTERIFLTVSNYIFTAIFVGEMTLKVVSLGLYFGEQAYLRSSWNVLDGFLVFVSIIDIVVSLASAGGA----KILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNRSDCMAA-NYRWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYNGLDAVAVDQQPVTNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRKAQRLPYYATYCHTRLLIHSMCTSHYLDIFITFIICLNVVTMSLEHYNQPTSLETALKYCNYMFTTVFVLEAVLKLVAFGLRRFFKDRWNQLDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLVCNDENPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRDCTHDERSCLSSL---QFVSPLYFVSFVLTAQFVLINVVVAVLMKHL 1733 HSP 2 Score: 183.726 bits (465), Expect = 3.848e-46 Identity = 110/241 (45.64%), Postives = 161/241 (66.80%), Query Frame = 3
Query: 831 LAESSKYSELIMSIIVLNTICMAVEHYNEPERMTKILEILNLIFIWIFTIEMIVKMFGIGLRAYFQMGFNCFDCIVVMLSMMELLINDNNSSGNFTVXXX---XXXXXXXXXXXPMRHQIAVMLRTTSSVXXXXXXXXXXXXXXXILGMHIFGGKFVFKNRYGKMVLARSNFDSFVWAIVTVFQILTQEDWNLVMYDGIRATTKWASLYFLSLMTIGYYVLFNLLVAILVEGFTTPLEKKR 1544
+ +S ++ IM I++NT+ M +EH+ +PE +T ILEI N++F +F +EMI+K+ GL Y + N ++ ++ ++ + + G +V R+ LR+L++ R + +R Q+ V+++T +V TF LL LF+F F+ILGMHIFG KF + G V R NFDS +WAIVTVFQILTQEDWN+V+Y+G+ +T+ WASLYF++LMT G YVLFNLLVAILVEGF + R
Sbjct: 636 IVDSKYFNRGIMMAILVNTVSMGIEHHEQPEELTNILEICNVVFTSMFALEMILKLAAFGLFDYLR---NPYNIFDSIIVIISIWEIVGQADGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLRTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWASLYFVALMTFGNYVLFNLLVAILVEGFQAEGDANR 873 HSP 3 Score: 95.5153 bits (236), Expect = 2.309e-19 Identity = 66/275 (24.00%), Postives = 127/275 (46.18%), Query Frame = 2
Query: 3020 NNYWREYPPWRKRIYKLCTSASWDVAITSVICSNVVIMSLEHYQMSEEFHILLEVCNIIFTTTYICEAVLLMVALSPRRYVKNKWYCXXXXXXXXXXXXXXXXYLNVHISNVNPAAIKAMRLLRVIRALKLLKMAKGLRFLLNHVAETIPQVTNLALLFSLLFFVYSCLGIQLFGTLECTNRFPCAGLGRHANFKTLGNSMLTLFRIATGDNWSGIMRDTLRSSCDNSIQCTSNCCVSRYVAPLFFVSFVLFAQFVLVNIVIAVLMKHLRVTTNG 3844
+ WRE R ++ + S ++ I I N V M +EH++ EE +LE+CN++FT+ + E +L + A Y++N + SI I + +R R++R LKL++ LR L + +T+ V +L L F++S LG+ +FG + NF +L +++T+F+I T ++W+ ++ + + S+ A L+FV+ + F +VL N+++A+L++ + +
Sbjct: 623 GDVWRET---RAKLRGIVDSKYFNRGIMMAILVNTVSMGIEHHEQPEELTNILEICNVVFTSMFALEMILKLAAFGLFDYLRNPY---------NIFDSIIVIISIWEIVGQADGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLRTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSP--------------WASLYFVALMTFGNYVLFNLLVAILVEGFQAEGDA 871 The following BLAST results are available for this feature:
BLAST of TCONS_00049808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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