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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049809 ID=TCONS_00049809|Name=TCONS_00049809|organism=Clytia hemisphaerica|type=transcript|length=3345bpRun BLAST on NCBI transcript from alignment at scaffold_166:378948..399334- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049809 ID=TCONS_00049809|Name=TCONS_00049809|organism=Clytia hemisphaerica|type=transcript|length=20387bp|location=Sequence derived from alignment at scaffold_166:378948..399334- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049809 vs. Swiss-Prot (Human)
Match: CAC1H (Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4) HSP 1 Score: 322.783 bits (826), Expect = 1.406e-90 Identity = 206/530 (38.87%), Postives = 302/530 (56.98%), Query Frame = 3
Query: 1788 NNAGDYSSSEDEEDINLSPLAQCVKEKTKQN------KPILLSARVTYDDDPKVLEWKA--LNDVEANNALLQEYNHEKKKNWNCVKRLF-------PNFTSYRNNWSFYLFPVDCRFRRTMIRITASKWFDAXXXXXXXXXXXXXXXENPHKKMSPSLRYLIDTSMFMMTWIFFIEMMIKVIADGFISGHGSYLRCGWNVLDFMLVLTSIVDVFITLYFSGTKAQHIEIIKGMRVLRATRALRPLRMIRKAPGLKLVVQTLLFSLKPIGNTVLIATIFFIVFGILGVQQLKGKFYYCFGVTANLVRNKTECIQHPDGVWTNYQYNFDNLLEALMTLFVVSTKDGWIDIMRRGIDARGVDLAPRTNYAQWRILYFVSFLLIGGFLVLNMIVGVVVENFQKCQELQDIQSNKARNVLQKWK---------KKIEQRRNNYWREYPPWRKRIYKLCTSASWDVAITSVICSNVVIMSLEHYQMSEEFHILLEVCNIIFTTTYICEAVLLMVALSPRRYVKNKWYCFDLLVEL 3305
+ G S+ ++ ED +P + + ++ +P L D D +V+ + ++++ E + + + + C RL P + R W+ YLF RFR + ++ K FD ++L+ I +CV +ALE P + R + S ++ T IF EMM+KV+A G +SG +YL+ WN+LD +LVL S+VD+ + + +G +I+ +RVLR R LRPLR+I +APGLKLVV+TL+ SL+PIGN VLI FFI+FGILGVQ KGKFYYC G + K +C + W +YNFDNL +ALM+LFV+S+KDGW++IM G+DA GVD P N+ W +LYF+SFLLI F VLNM VGVVVENF KC++ Q+ + + R + + E +R Y+ +Y P R+ I+ LCTS D+ IT +IC NV+ MS+EHY + L+ CN +FT ++ EA L +VA RR+ K++W DL + L
Sbjct: 1168 SGEGKGSTDDEAEDGRAAPGPRATPLRRAESLDPRPLRPAALPPTKCRDRDGQVVALPSDFFLRIDSHREDAAELDDDSEDS--CCLRLHKVLEPYKPQWCRSREAWALYLFSPQNRFRVSCQKVITHKMFDHVVLVFIFLNCVTIALERPDIDPGSTERVFLSVSNYIFTAIFVAEMMVKVVALGLLSGEHAYLQSSWNLLDGLLVLVSLVDIVVAMASAGGA----KILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKFYYCEGPDTRNISTKAQC-RAAHYRWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDGLDAVGVDQQPVQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLERRRRSTFPSPEAQRRPYYADYSPTRRSIHSLCTSHYLDLFITFIICVNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAALKLVAFGFRRFFKDRWNQLDLAIVL 1690 HSP 2 Score: 194.512 bits (493), Expect = 5.174e-50 Identity = 112/238 (47.06%), Postives = 162/238 (68.07%), Query Frame = 3
Query: 831 LAESSKYSELIMSIIVLNTICMAVEHYNEPERMTKILEILNLIFIWIFTIEMIVKMFGIGLRAYFQMGFNCFDCIVVMLSMMELLINDNNSSGNFTVXXXXXXXXXXXXXXPMRHQIAVMLRTTSSVXXXXXXXXXXXXXXXILGMHIFGGKFVFKNRYGKMVLARSNFDSFVWAIVTVFQILTQEDWNLVMYDGIRATTKWASLYFLSLMTIGYYVLFNLLVAILVEGFTTPLEKKR 1544
+ +S +S IM I++NT+ M VE++ +PE +T LEI N++F +F +EM++K+ G Y + +N FD I+V++S+ E++ + FR LR+L++ R + +R Q+ V+++T +V TF LL LF+F F+ILGMH+FG KF K G V R NFDS +WAIVTVFQILTQEDWN+V+Y+G+ +T+ WA+LYF++LMT G YVLFNLLVAILVEGF + R
Sbjct: 789 IVDSKYFSRGIMMAILVNTLSMGVEYHEQPEELTNALEISNIVFTSMFALEMLLKLLACGPLGYIRNPYNIFDGIIVVISVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLVKTMDNVATFCTLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANR 1026 HSP 3 Score: 83.9593 bits (206), Expect = 3.984e-16 Identity = 59/237 (24.89%), Postives = 120/237 (50.63%), Query Frame = 3
Query: 2229 IDTSMFMMTWIFFIEMMIKVIADGFISGHGSYLRCGWNVLDFMLVLTSIVDVFITLYFSGTKAQHIEIIKGMRVLRATRALRPLRMIRKAPGLKLVVQTLLFSLKPIGNTVLIATIFFIVFGILGVQQLKGKFYYCFGVTANLVRNKTECIQHPDGVWTNYQYNFDNLLEALMTLFVVSTKDGWIDIMRRGIDARGVDLAPRTNYAQWRILYFVSFLLIGGFLVLNMIVGVVVENFQ 2939
++ S + T +F +EM++K++A G + Y+R +N+ D ++V+ S+ ++ + G+ VLR R LR L+++R P L+ + L+ ++ + + +F +F ILG+ + FG +L + + + PD + NFD+LL A++T+F + T++ W ++ G+ + + W LYFV+ + G +++ N++V ++VE FQ
Sbjct: 825 LEISNIVFTSMFALEMLLKLLACGPLG----YIRNPYNIFDGIIVVISVWEIVG------------QADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLVKTMDNVATFCTLLMLFIFIFSILGM--------HLFGCKFSLKTDTGDTV--PD------RKNFDSLLWAIVTVFQILTQEDWNVVLYNGM----------ASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQ 1019 The following BLAST results are available for this feature:
BLAST of TCONS_00049809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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