TCONS_00049810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049810
Unique NameTCONS_00049810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049810 ID=TCONS_00049810|Name=TCONS_00049810|organism=Clytia hemisphaerica|type=transcript|length=2304bp
CTTTTCCTGAAGTTCAACTTTCTGCTGAACAACGTAGTGCATCGTTCCCA
GGGTTAAACCCAAAATCACTTGATCTACAGTCATGTGCATCTTTCGAATG
TTCAATACCAAGCTGCAACAATTCAGCAATGTCGACACCCAGGAAACCAC
CTCCTATTATGAAACCAGATGTTGGTATTTTATCGCCAATGACCAAAACA
TTCAATTACATCAATTCGTTTACATTTGATGAACACTTTGTTGAAATGGA
ACAAAACAACAATAATTTAGATAATGcaaacaataacaacaacacCAACG
CCAGTCTTCTTCCTTCAACACCAAACAGTCTGAGACCCACAAACAACATG
CAACTGCTAACACCTGGAGACGCTGTCGATCATAATTACCTGAAAACAAA
CACATTTTCCTTACACGCAGATACTTCGGTCACCGTACGGGGATCGCGGT
CATCTTCGATTCGTTCACGGACGTCAGTCTCTTTAAGAATTAATGGAGAA
TCGATAGAAGCTAGCACTTGTCTAGACACGGACAAACGAGAAACGAGGAG
GAAATATTCAACAGAAAGTAAATCTCGATCGCATAGCGTCAGCTCACAAA
TCAGCAGTGTAAACGAAGCAGCTACATCAACGGACGGCCGCTGGCGAAAA
AACTCACATGCCAACATCTTGCGAGCCAGTGTCTCAAGCTCACAAATCAG
TGCTACAGACAGCAGCGAATACAGTTGTTCAGATTTCGATGGATCCGTTT
TCGATTTACGTCATTGTGACAAATATTACGTGTCCGAAGTTCCGTCAAGA
TATAAACAATTCAAATTGTTTTGTAACCATTTAGCGGAAAGCTCGAAATA
TTCGGAGTTAATAATGTCCATCATTGTTTTAAACACAATATGTATGGCTG
TCGAACATTATAACGAGCCTGAAAGAATGACCAAGATATTGGAGATTTTG
AATCTAATTTTTATTTGGATCTTCACTATCGAGATGATCGTCAAAATGTT
TGGTATTGGATTGAGAGCATATTTCCAAATGGGGTTCAATTGTTTTGATT
GCATCGTTGTCATGTTAAGCATGATGGAATTACTCATCAATGATAATAAC
AGTTCCGGTAATTTTACCGTATTCCGGTCATTACGATTACTCCGGATTTT
CCGTCTTATCCGACCGATGCGTCATCAAATTGCCGTTATGTTACGAACAA
CGTCGTCCGTCATGACGTTTTTTGCGTTGCTGTTTCTCTTCATGTTCACA
TTCGCTATTTTGGGAATGCATATTTTTGGTGGGAAATTTGTTTTCAAGAA
TCGATATGGGAAAATGGTGTTGGCAAGATCCAATTTTGATTCTTTTGTAT
GGGCTATTGTGACTGTTTTCCAGATACTGACTCAAGAAGACTGGAATCTA
GTCATGTATGATGGTATCCGAGCGACAACAAAATGGGCGTCACTTTATTT
CTTATCCTTGATGACGATTGGCTATTATGTCTTGTTCAACCTGTTGGTTG
CTATCCTTGTCGAAGGCTTTACCACGCCACTCGAAAAGAAACGTATGACT
CGACACATTGTTTCATTGTTGAAAAGCAAAGCCAACAAAAAGATGTTAAC
ATTGAAGCGGACAATCAGTTTACCGGACATGCTGATGAACAATAATAACG
TTTCCAATAACAACAATCAAAACACACAAGAAGATGAGACAGAAACACAA
GGACAAATATATGCACGGATGATGGCAAGACGTCGTACGCTGGGAACGAT
AGGTTTGAACAACCACGACACCTTCTCTTCCACCAAGAATAATGCTGGTG
ATTACAGCTCTAGTGAAGATGAAGAAGATATCAACCTCTCACCGCTTGCT
CAATGTGTTAAAGAGAAAACGAAACAAAACAAACCCATCCTGTTATCAGC
ACGAGTGACATATGATGATGACCCAAAAGTCTTGGAATGGAAAGCTCTGA
ATGATGTGGAAGCCAACAATGCACTATTGCAAGagTACAAtcatgagaaa
aaaaagaattggaaTTGTGTGAAACGACTCTTTCCAAATTTCACTTCGTA
CCGGAATAATTGGTCTTTTTATTTATTCCCCGTGGATTGCAGGTTCCGAA
GGACCATGATTCGAATAACAGCATCCAAATGGTTCGACGCCATTATACTT
CTTTTGATTCTGTACAGTTGTGTTTTGTTGGCCCTTGAAAACCCTCACAA
AAAGATGTCACCAAGTTTACGTTATTTGATCGACACTTCGATGTTTATGA
TGACGTGGATTTTCTTCATTGAAATGATGATTAAGAAAGACAGAATTGAC
AAAA
Run BLAST on NCBI

transcript from alignment at scaffold_166:387510..399334-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049810 ID=TCONS_00049810|Name=TCONS_00049810|organism=Clytia hemisphaerica|type=transcript|length=11825bp|location=Sequence derived from alignment at scaffold_166:387510..399334- (Clytia hemisphaerica)
CTTTTCCTGAAGTTCAACTTTCTGCTGAACAACGTAGTGCATCGTTCCCA
GGGTTAAACCCAAAATCACTTGATCTACAGTCATGTGCATCTTTCGAATG
TTCAATACCAAGCTGCAACAATTCAGCAATGTCGACACCCAGGAAACCAC
CTCCTATTATGAAACCAGATGTTGGTATTTTATCGCCAATGACCAAAACA
TTCAATTACATCAATTCGTTTACATTTGATGAACACTTTGTTGAAATGGA
ACAAAACAACAATAATTTAGATAATGTAAGAACCTTACGCATAGATTTAT
AAAGCCCGAAGAGCTAGATGTCGTACTATGGCTTAAAAGTGTGCCGTGGT
TAGGTAGGAAATTCTACCTAGGTTACGTGACATTACATAGAATTTCAGCG
CTTGACCAATCAGAAGCTTCACGGGTTTTTGAAAACTATAGGGCTTTATA
AATTTGTGTGACTACGTCGTACAGGGCTAAATATATAATGGATACTATAA
TTTATAGTAATGAGTCATCGATTATAACGCCATAATCATTCTTTACGGTT
GTTCGCGAAAATGAGCGAACAAAAACAATCAAGTTACATCCTAGATAGAA
TCTACATCATAGTACTCTTCATGTTCAGTCATTTGTTTGGTCATTTTCTG
TTAAATAATGCGATTTGAAAAATATGGCAAATTTAAGACTTAACTTAACT
TAACTTCAGTACGATCTCGAAATGCATACTAACACAAATAAATTTCTGTA
AGAGGGATTCATAACCTTTTCAATCTTAGGCAAACAATAACAACAACACC
AACGCCAGTCTTCTTCCTTCAACACCAAACAGTCTGAGACCCACAAACAA
CATGCAACTGCTAACACCTGGAGACGCTGTCGATCATAATTACCTGAAAA
CAAACACATTTTCCTTACACGCAGATACTTCGGTCACCGTACGGGGATCG
CGGTCATCTTCGATTCGTTCACGGACGTCAGTCTCTTTAAGAATTAATGG
AGAATCGATAGAAGCTAGCACTTGTCTAGGTAAATATCTAAATATTGATC
TTTGTCTTTTTGTACTTACCCCCGGTGGGTACATGTGCAAAATGGTAATG
CCAAAAATGTGACGGAGCCCGACTTTCGATAAACATTTGTCTCCTGCCGG
AAATATGCCGGAAATCGCCGTTTTGCAGATTTTCATTGGACTCTTTCCTA
ATATTTCTTTGTTTTTCTCACACAACAACATTTTTGGTAACAATGCCCAC
AATCAAGCATGATTCAATTGTAGATGAAATTGATTTTTGAAGCTGGAACT
CTCTAAAAATCGTCGAAACAATCGAGAATCGCCGGTAATAACGGTTTCTC
TTGAATTTCTCGAGCTGTAATTTATATTTTTTTTTCATGAAATTTTGCAC
AATGATGCAAAATAGCAATACCTAAAATGTGACAGAGCCCGATTTTCAAT
AAACATTTTTTCGGCCGAAAATGCCGGAAATATGCCGGGAAAACTAGTTT
TTTTGCATTTTCTGGAGATTTCATCATTAGTTTTTTCTGTTGTTGTGCAC
AAAAATAAACGTCTTTGGATGGTCCTGGAATTTTTACTGACGTCAGCAAC
TACGTTATTTTTCAAACAACGTTCAACAATAACTTTTTTTGGTTTCATTT
TCAGATATAGGTTGAAATGTTTTCCTAAAAGAGCATGAAAAATGCTTTCC
AACGGTATGTAACATGACATACTTTGGAGAAAAGAAATTCTTTTTAGGCT
GGGAACCTGTTCTGGTCTGTAAAATACACAAACAGATGCCTAAACTACAA
TTGTGCAAAGTCTCATGCTTGTACGCCTTTGTGCACAATATTAATGACTT
TTGGCACATTTGGACTGCACTATGGGTAATAAGGACTGGTCGCGCCTCTG
CAGATTTTTTTTCCGTACATGGACGGAAGTATCATCGACGGTCGGGAGTA
TCTCATCTTTGTTGTTTGGTTTTGTTTTTTTGAATTGCTTAGGTCAGGGC
TGGTAGTAACGGCTCGGGTCCCGCAGGGTTGCTAGTAACGGCTCGAATTT
CAGTCAGANNATTTCCTAATTTTGTGTTCTGCTGTGCGAGTGTGGCTCAA
CGGATAGCGCGCTGTGTTTCTGATCAGAAACTCTTTCATTTGGTGGGTTC
GAACCCCGGTCGGGTCGCTATTTCAAGGTTTCAGATAAGTTTAAGATACT
TCCGTCCGTCGATGATACTCCTGACCGTCAAGAGGAGATACTTCCGACCG
TCGATGATACTCCCGACCGTCAAGATGAGATACTCCCGACCGTCGATGAT
ACTTCCGTCCATGTACGGAAAAAAATTATGCCGCGCCTCTAGAACGGCTT
TCTGTTGGCTAGACGCAATAATCTTCAAAAATTTTCAAAACTTTGGACCA
ATAGTAAGTCGTCATTAGCGCGGGTTGGTCCTGATTACCCACTACGCTTT
GTGACTGTGAAATGGCCTATTCTACTGAATGATTGACTCCAAATTTTCTC
AATTTCAGACACGGACAAACGAGAAACGAGGAGGAAATATTCAACAGAAA
GTAAATCTCGATCGCATAGCGTCAGCTCACAAATCAGCAGTGTAAACGAA
GGTAAAAAGAGATTCTGGCTTCACTTACTTTGCCTTTTACTACTGCAGTA
AATCTAAAAAATACAGGGTCATTTCACTGGCGGATTTAAGACAATAAAAT
AAGTACGTCGGGAACATGCAACGGAGTGCAACGCTCGTTAAAAGACAATG
AAATTGCAATTACAAATATCTTCCTCTGATAAGCTCGACGTGGTCTAAAA
CCGCCTATGCATTTAAGTCAATCAAATCAATGCAAAATATTCTTCTTTCA
TCTCTTATCAGCAGCTACATCAACGGACGGCCGCTGGCGAAAAAACTCAC
ATGCCAACATCTTGCGAGCCAGTGTCTCAAGCTCACAAATCAGTGCTACA
GACAGCAGCGAATACAGTTGTTCAGATTTCGATGGATCCGTTTTCGATTT
ACGTCATTGTGACAAATATTACGTGTCCGAAGTTCCGTCAAGATATAAAC
AATTCAAATTGTTTTGTAACCATTTAGCGGAAAGCTCGAAATATTCGGAG
TTAATAATGTCCATCATTGTTTTAAACACAATATGTATGGCTGTCGAACA
TTATAACGAGGTATCTTTTGGGATTTTTGTAATGAAAGGGAAGGGTCTAT
AAGAAACACAACAAATATAAAAATTAGTTGGTCTCGCGTAGGGTCCATTT
ATCAACCTTTGTCGCGGTTATCAAAAAGATCTGAAAGTTACTGGCTCCTT
AAGACACTAGCGCGGACACAAGGGAGAACGGTTATAGCATTTGGCTAAAA
AAGAGAAGCGTCGAGAAAAAAATACACACAGGTCAGAAATAGTTTTTACC
AGTTGAGGCACATTTTAAATAACTTAAATTTCTTATACCTTTAGACATAG
GAGAATGATTATAGCATTGGGCTCTTCCAGAAAAAGAATTGTATATGGGG
GGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCCCCCCC
CCCTGAACAAAGTCCCCCCGGACAACGGGTTTTACCCCTTGGACAAACAT
CATTCGACCGCCCGGACAACCCAAATTACCCCCAGACAACCCAAATTTCG
ATGATTTTTCGCTACCCCCGGACAATGTATCCTCGATCCCCATGTATGAA
AATTTTTTGGAAGAGCCCATTTACCTAAAAAACAACACAATCAGAAATAA
AAACAAAGACTAGACAAGTGAGAGAGCAATGACATACTCGAGTGGTTAGT
AACTTTTCTTCTATACTTTTTTTAAGCCTGAAAGAATGACCAAGATATTG
GAGATTTTGAATCTAATTTTTATTTGGATCTTCACTATCGAGATGATCGT
CAAAATGTTTGGTATTGGATTGAGAGCATATTTCCAAATGGGGTTCAATT
GTTTTGATTGCATCGTTGTCATGTTAAGGTAATGTTTTGGCTTACTAAAT
AACAATTGATGATATGCATCATTGCAATGTCTTCCACATCACCCACATGG
ACTCGACAGCTGATTGGTTGTAAGTGAAGTAAAATCAGTCAAAACGTCAC
CTGCAATCAATCAGCTGTTGGGTCCGTGATGTAATGTCAGAAAACATTGC
TATGGTGCATATCATGGATATCTATTTATGGACATCAGAAGGTTTTGAGT
CTGGCTAGAAGAGTTCCTCCCCTTGGTCAAGTCAAATTTAATTTGGAACA
CTGTTCCGTTGAGTGAATTTCCTAGGGGGAGACAAATTTCCGGGAAGCAT
ATTTCCAGAAGGGGGTAAGTAACCGGGAGCGAAATTCCTGGGCACACGTT
TCCGTACGGTAGATCTTTTTGGTGCAAGTTTCCGAGGGGCAAGTTTCCCG
GGGTCAAAGTTCATGTCACCAGTAGGGAAATGATTGAGTTACGTTAACTA
CTATAATCATGCTTAGGATTTTTCAAAATGTTTTTTTCGTATATTTAGCA
TGATGGAATTACTCATCAATGATAATAACAGTTCCGGTAATTTTACCGTA
TTCCGGTCATTACGATTACTCCGGATTTTCCGTCTTATCCGACCGATGCG
TCATCAAATTGCCGTTATGTTACGAACAACGTCGTCCGTCATGACGTTTT
TTGCGTTGCTGTTTCTCTTCATGTTCACATTCGCTATTTTGGGAATGCAT
ATTTTTGGTGGGAAATTTGTTTTCAAGAATCGATATGGGAAAATGGTGTT
GGCAAGATCCAATTTTGATTCTTTTGTATGGGCTATTGTGACTGTTTTCC
AGGTAAATCGAAACCCGTTAAATACTCTCGGGTCCTTAATAGCCGGGGGT
TTGGAATAAGCAGGGGGGTTGGAAAAATCTCAAAAATTGATAAGCGGGGG
GGGGGTTGGAATAAAAATGTCCTGGGTGCAAAATTTTCGAAAAAGAGGCT
AATACAGCAGAATTAGGGCAAAAGAGGGAACTTTGAAAAGGAATTTCCCA
AAAATCAATAAGCGGGGGATTGGAATATATTAATTAACATGGAACGTGAA
CTTTTTCGAGTAATCACATGTTTTGACTGCATTGATATAATTTTGCAACC
CGTGTATTGGAGTTTATCTGTAATTTAACAAGGTTTTTTCATCCACCTCT
AACTGTTAGGTCGGGGTGGGTTCATTGGCTTCCATGCTATATTCTAAGCC
AGAGTTAAGTCATAGTTGAAATATTGCTTAAAAATTGTTATAAAAAAAAC
TTAAATATCACTTGCAGTTTTAAAATTTTAAGAGAATTCCCCTTTTATGC
CAATGTTATGGCCGACATTGTATTATATTATTATACACTTAGATTTCAAT
AGAGGGAACACGGTACATGCGTTAAGAAAGGCGTTGGAATATTGATAAAC
CGATTCGAAAAAAATCCAGTTAGGGACTATCTTCAAGCAAACATAAAGCA
AGCTACCTGTTCCTAACTCACAAAAATATACCCACGGAACAAAAAACTAT
GTGCAGGTCTAAACGGGCTATATTCTTTAGCTACTAGTATCAAGGTGTTA
CTAAATCATTCTGCATATATTGTTTCTACTATTTCTAAGAAAAGATGGCT
GATCGTGAATGAAAATGACGTCACACGGAATCGGTCTATATTTGATACAC
ATTTTCCAATGTTTATTATCTTCAGATACTGACTCAAGAAGACTGGAATC
TAGTCATGTATGATGGTATCCGAGCGACAACAAAATGGGCGTCACTTTAT
TTCTTATCCTTGATGACGATTGGCTATTATGTCTTGTTCAACCTGTTGGT
TGCTATCCTTGTCGAAGGCTTTACCACGCCACTCGTAAGTTGATCTAATA
CATAGTCCCTCATTAGTTCCCTTTTTTAACAATTCTTATAGCCCTCACGG
TCGAGCCACATTCATCAGGAAAAAAATTGGTCGTATATAACAGCTTTTAG
GACCTCCGTTCAGGTAAAGAGGGTTCAGGTAATAGTTGATGGTAGTTTAC
TATATCGTATAATTTATTGTATCGTATTTTGATTTCCTATAATTCAGGAA
AAGAAACGTATGACTCGACACATTGTTTCATTGTTGAAAAGCAAAGCCAA
CAAAAAGATGTTAACATTGAAGCGGACAATCAGTTTACCGGACATGCTGA
TGAACAATAATAACGTTTCCAATAACAACAATCAAAACACACAAGAAGAT
GAGGTTCGTGTGGGAGGAGGGTTCCTTGATCATTGTTTTTCCAGGGATGT
CAAAATCAAAGTCAATTTCCCTGTGGGGTCGACACTGTATGGTATTTTTC
CACCGGGGACGAAATGCCGTATCGGGGAAAAAAATTTCAGAGTTTTATTT
AGTCGGGTTTTTTTTCGTCGGGGGAAAATTTCGTCACCCCCTGAAAATTT
TTCATCACTTTCCCCCGACATTTTTTTCCCCCGATAAGGTATAGTAAAGT
ATTATTCCCTTTGCACAAAATATTATTATTGACTTATGTAAGAAATAACG
GGCGTTAGAAACAAGTCGTGTTTTCATGCTCCGGTCCTTTTCCTTTTGAT
AGATATCTACTTTATTTTCAGAAACAACCGTATGAATGAAGTGTTGATCA
AAAATTGTACTCTTTCTTTAGACAGAAACACAAGGACAAATATATGCACG
GATGATGGCAAGACGTCGTACGCTGGGTGAGTCTTGACTTTATAGGTGCA
CGTATCTTTGAAATAGTTTTTGTTATAAGAGATGCGAATCAAACTTGGAA
ATCGCTCGGAAAACCTAGAAAATTTTTGCTGATAAGCAATTTTTTTGTGG
TTTTGCCCTTTTTATTAAACCTTTGTCACAAAAATTGAAAAAGATCTATA
ATATCATAATATCATACCCTAAAGTTTTAATGAGGACAACGATTACCAGC
TCAAAAAACTTACTTGGCAAAAATTGGCTGAGCGGACGTGATTTTTGAGG
TCGATTCGCATCTCGATACAAAACAAATTAGAAGTTGCTAGCAGCCTAGA
GTTTGGTTATATTATAAAGACATCGATTTTAGCGCCCGTCAATCCCAGCA
ACTGGGACTAGAGTAAATATGAGCTAAAATGTGCTACAATTAGCTTGTGA
AAGCATGAATTGTTATGTCTACAAAAATCTGATTTCACAAAATCATTATT
TTATAAAAGATTTCTGTTCTTAAAATACAATAATTTATTTCCAAACATTT
TTCCACAGGAACGATAGGTTTGAACAACCACGACACCTTCTCTTCCACCA
AGAATAATGCTGGTGATTACAGCTCTAGTGAAGGTGAGACTTCTTGGGAA
TTCTATCGAGCGTTACATGCATGACTTTTCTTCCTAGAATGTTTATATTT
TAGTCATGACGAGAATTTTATTAATTAGGGAAAAGTTAGCCCACACTACA
TCCATTAAGAGAGGAATTTTCAGCCTTTCCTAGGCAAAAAAAGTGATGCC
TTAAGATTTATGTCGCATTTAGAATGGTGAACAAATTTAAGCGGCATATT
TTTCGAAATCTATCGGTAAATTTTACTTTCAATCCAGCGGTTCTGTGAAA
ATCACGCGGGTCACTCGCTTTCGATAGGAAAAAGTAGCTTCGTTTCCCAT
CCAAGAGTTTCTTCTTTAGACCCTTCGGGGTTTTAAGTTCACAATCAACT
TGTAGCTTATAAACATACCCTGTCTCCACAGCCCCGGTAGAACTTTTTCC
CAAAAGCGAGGATAAAAAATTTTTGACAAATTTTCAGTGAGGTGGGATGG
GGGTCCCAGCGGGTCTGTGGCACAGGGGTGTTTATAATATGCCATCCCTT
TACCTTTAAGATGAAGAAGATATCAACCTCTCACCGCTTGCTCAATGTGT
TAAAGAGAAAACGAAACAAAACAAACCCATCCTGTTATCAGCACGAGTGA
CATATGATGATGACCCAAAAGTCTTGGAATGGAAAGCTCTGAATGATGTG
GAAGCCAACAATGCACTATTGCAAGAGGTTTCATTTTATTTTGCAAATAT
CTCTCTTGTACACACTTTTTTATAAGAATTAGTGTTTTCGGCTGGAGGGT
GAAGTACAGTATTCTCAGAAATTTGTTCAAACTGAGAGTGAGATATTTTT
AAATTCTCTGTTGAAGTTGGCATTTCTCAACAAAATCTAACACGAATTTT
TCTGAATTATGCTGACGTAAGCAAGAATTGGAAATTTTCTTCTGCTTTGC
TTCGTTTCATCGATGTACACCTTGTGTGTGAAAATTGGAAAAAAATTGAC
GTGAAAAGCTGTCTCCTATACTTGAGGTTATTTGAGATTTTCTTTCTATG
ATGTCATCAAAATGGGGCGAAATTGAGGTATTCCCAGGTTGGAACGGGAC
GAGATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTAACCAC
CAGTGATGAAACAATTTTGTTACTTTTTCTAAAGAACGTGTCATTTTCAT
TACTCCAAATGACCAATTATTAAAGTATCTTAAAAAAACTCCATCTTATC
TGGTTGGAACTTCATGTGGCCATTGGGGAGTGTCTTAAGGAAAGGCCGGT
CTCCACTTGCGCGCGCTTCAATCGCACTTCTTCGAGCGAAGCTTCCACGC
TATTGGTCAAAACAAAAATGAAGCAACTCCATTGGCGCGATCTGACGTAA
CGGTTAAAAAAAGTTGAAATGTGTTCAACTTTTTTTTCGAGCGCGCGCAA
CATTTTTATGACGTAATCTTTTTTCCAAGCAAAAAGAATCAAAGCCAAAA
AGTGCGATCGCAGCGCGCGCAAGTGGAGACCGGCCTATAGGTATTCTGAG
GATACGGCGCGCGATACAGTTAACTTCTTGATTTTCTTCCTCTTAACAGT
ACAATCATGAGAAAAAAAAGAATTGGAATTGTGTGAAACGACTCTTTCCA
AATTTCACTTCGTACCGGAATAATTGGTCTTTTTATTTATTCCCCGTGGA
TTGCAGGTAAGTGTGTATGATATTCCCTTATAGTATTAAGTATATTTATT
CCCACTTTCGAGGACGGCGAAGTGATTGAAACGATTTCCTGTTTTACCCG
AAAAATCGAGGACGAGAAAAAGTGCTGATTTCCTGTCATCCTCAATCAAT
CAGGATCTAGACAAATCAAAAGCTAGCTGTCTTCGTCACAGAAAACGCAG
TTACATAAACTCGCGAGGGGCATTGTACAGTAAAGCCTAAAGGAAAGGAA
TTCCTTTTCCATTTAAAGAAACTTGAAGCAAAATCATAGAGAAAAAAAGT
TTGAAAAATACAAGAGGAATCTTATCAAAAAATATACCATAACTTTTCCC
CCCCCCCCCCAACGATTACAATGTTCAGTTTGCAGTGCCGTCTCACAATT
TATTGAACATTGCTCAAATTGGTGAAAGAGGGTCACCCAAAACAGCTTGA
AATTTATTATTTTTTTCTCATACTTATTTTTTCCATGAGTGTACCTTATG
ATTGTGTCGTTTTACCCTCCGTTCAAAGAGGTCTAATGAGGTGTATAAAA
GGCAGGACAGCATCTACCAGAAAATAAAAAGGCTCTTTTTCTGGTGTTTT
TCGGGCACTGAAAGGATGTCCTCGACCTTGATATTTGATAATAGAATGAC
GCTTCGCTCGCAATCATCTACTTCAAACAAAAAGCTGCCAAACCTCTTTC
AAGCACCAAAAAACCTTGAAATCCTTGAAAATGTTGAAAAATTGAAAAAA
AATTCCGTAGACACTCTGTATAAAAGGCATGGAAGTTGCTCTTACTATTT
ACTAATGACAACAAATAACGTACTTTTAAGGATACTATTCATAATATGCA
CCTTTGCAATGTCTTCTGACATTACATCACGGACCCAACAGTTGATTGGT
TGTAAGTGACGTAAAATCAGTCAATACGTAACTTGCAACCAATTAACTGT
TGGGTCCGTGGAAGATATTGCACTGGTGCATATCATAAATTACTCTGCGT
TTCACCTTTCAGGTTCCGAAGGACCATGATTCGAATAACAGCATCCAAAT
GGTTCGACGCCATTATACTTCTTTTGATTCTGTACAGTTGTGTTTTGTTG
GCCCTTGAAAACCCTCACAAAAAGATGTCACCAAGTGTAAGTGTCTTCAT
CTTCTTCTTCTTCACACGTGTGCTGTTTTTTTTCCTTTTTCCGAATCTCT
ATTATTTGAATATATTTCTTTAATTCCAATTATTATTGGTCCCTCAGCTA
AAAAGTGGTTTAAATTACTCTCTGTAATTCGAATCTTTCACTAATTCGAA
TAAAACTTTTGGTCCATTTAGGATCGAATTAGAGAAAATCAACCGTACTG
TAATTTGAACACCTCCCAACCTTGAAACCTTCTGGGTAACCTTGAAAATG
TGTCTACATTACCTTAAAAACCTTCCTGGAAGAAAACCATTTTGTAAACG
ATGTCGCCGGAGTTTTTGATTTTTCTAAAGGCGATGCATTGTGGGATTGT
TTCGGGGGTATTACAATAGCAATCTCTTAGGAATTCCTCGAGGGAATTCT
ATTGTAATACCCCCGAAACAATCCCACAATGCATCGCTGTTTTAGATAAA
TCAAAAACTCCAATAAGGTCTATTTGATACCGTGCTCTGATAAAAACTTT
CTGTTGGCCTAAAATTTTGGATATTTTGCGTCTAACCAATGGGAAGCCGT
TAAGAGGGCGCTATCAGTCCTGATTTATTTATTTAGTCCTGATTTATTTA
GTCCTGATTTATTTTGACCATGAAATGGCCTATTTCCCTTTTATGAAGAT
TTTACCAAAATGTTTGATAGGTGTGTAATGACCTATGTTTTCGTATTTTT
CAGTTACGTTATTTGATCGACACTTCGATGTTTATGATGACGTGGATTTT
CTTCATTGAAATGATGATTAAGGTATTGATTATTTTCCCCGAATCTATTG
GGCTTTTTTTATACATTTCAATCTAGACGAATAACTTTTGTCTTTTTAAA
TGAAATTCTCGACAATTTTCTATCAAAAAGATGTTTGATCCCGAAATTTC
GACGTAGACGTTACTCACAAAGAGCTGGATAATGTCATATTTGTTGGACT
TTGATAGATCATGATGATTGGTAGTTTGACTTATGACAAAACGCACGACG
TTCTGACTAACATAACATTCATACAGAGTAGTTCAGGTTTATTCTTTTAG
AAAAGTATAAAGGACGATTTAAAAGACAGCACGATTCTTTTGATTGATTT
TACCTACCTACTTACCTACATACCTATCTACCTACCTACCTACCTACCTA
CTTACCTACCTAGGTTGAGCACCCAGCCCAGACCAACGATCGATTTTACT
ATTTAGAAAGACAGAATTGACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031573XLOC_031573Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049810-exon-scaffold_166-1575043694:399060..399334TCONS_00049810-exon-scaffold_166-1575043694:399060..399334Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:398306..398555TCONS_00049810-exon-scaffold_166-1575043694:398306..398555Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:396734..396826TCONS_00049810-exon-scaffold_166-1575043694:396734..396826Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:396175..396473TCONS_00049810-exon-scaffold_166-1575043694:396175..396473Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:394857..395008TCONS_00049810-exon-scaffold_166-1575043694:394857..395008Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:394033..394336TCONS_00049810-exon-scaffold_166-1575043694:394033..394336Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:393001..393159TCONS_00049810-exon-scaffold_166-1575043694:393001..393159Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:392632..392787TCONS_00049810-exon-scaffold_166-1575043694:392632..392787Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:392159..392213TCONS_00049810-exon-scaffold_166-1575043694:392159..392213Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:391552..391626TCONS_00049810-exon-scaffold_166-1575043694:391552..391626Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:390858..391024TCONS_00049810-exon-scaffold_166-1575043694:390858..391024Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:389879..389985TCONS_00049810-exon-scaffold_166-1575043694:389879..389985Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:388749..388872TCONS_00049810-exon-scaffold_166-1575043694:388749..388872Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:387963..388031TCONS_00049810-exon-scaffold_166-1575043694:387963..388031Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1575043694:387510..387528TCONS_00049810-exon-scaffold_166-1575043694:387510..387528Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:399060..399334TCONS_00049810-exon-scaffold_166-1510915933:399060..399334Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:398306..398555TCONS_00049810-exon-scaffold_166-1510915933:398306..398555Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:396734..396826TCONS_00049810-exon-scaffold_166-1510915933:396734..396826Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:396175..396473TCONS_00049810-exon-scaffold_166-1510915933:396175..396473Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:394857..395008TCONS_00049810-exon-scaffold_166-1510915933:394857..395008Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:394033..394336TCONS_00049810-exon-scaffold_166-1510915933:394033..394336Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:393001..393159TCONS_00049810-exon-scaffold_166-1510915933:393001..393159Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:392632..392787TCONS_00049810-exon-scaffold_166-1510915933:392632..392787Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:392159..392213TCONS_00049810-exon-scaffold_166-1510915933:392159..392213Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:391552..391626TCONS_00049810-exon-scaffold_166-1510915933:391552..391626Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:390858..391024TCONS_00049810-exon-scaffold_166-1510915933:390858..391024Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:389879..389985TCONS_00049810-exon-scaffold_166-1510915933:389879..389985Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:388749..388872TCONS_00049810-exon-scaffold_166-1510915933:388749..388872Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:387963..388031TCONS_00049810-exon-scaffold_166-1510915933:387963..388031Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1510915933:387510..387528TCONS_00049810-exon-scaffold_166-1510915933:387510..387528Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:399060..399334TCONS_00049810-exon-scaffold_166-1491911889:399060..399334Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:398306..398555TCONS_00049810-exon-scaffold_166-1491911889:398306..398555Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:396734..396826TCONS_00049810-exon-scaffold_166-1491911889:396734..396826Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:396175..396473TCONS_00049810-exon-scaffold_166-1491911889:396175..396473Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:394857..395008TCONS_00049810-exon-scaffold_166-1491911889:394857..395008Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:394033..394336TCONS_00049810-exon-scaffold_166-1491911889:394033..394336Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:393001..393159TCONS_00049810-exon-scaffold_166-1491911889:393001..393159Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:392632..392787TCONS_00049810-exon-scaffold_166-1491911889:392632..392787Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:392159..392213TCONS_00049810-exon-scaffold_166-1491911889:392159..392213Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:391552..391626TCONS_00049810-exon-scaffold_166-1491911889:391552..391626Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:390858..391024TCONS_00049810-exon-scaffold_166-1491911889:390858..391024Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:389879..389985TCONS_00049810-exon-scaffold_166-1491911889:389879..389985Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:388749..388872TCONS_00049810-exon-scaffold_166-1491911889:388749..388872Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:387963..388031TCONS_00049810-exon-scaffold_166-1491911889:387963..388031Clytia hemisphaericaexon
TCONS_00049810-exon-scaffold_166-1491911889:387510..387528TCONS_00049810-exon-scaffold_166-1491911889:387510..387528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:387510..399334 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0184558	1.36685e-05	0	0	0.427817	0.175825	0	0.158839	0	0.261633	0.115489	0	0	0	0	0	0	0	0	0.136365	0	0.130256	0	0	0.127186	0	0	0.0693435
Blast
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BLAST of TCONS_00049810 vs. Swiss-Prot (Human)
Match: CAC1H (Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4)

HSP 1 Score: 196.823 bits (499), Expect = 9.530e-52
Identity = 111/230 (48.26%), Postives = 160/230 (69.57%), Query Frame = 3 
Query:  831 LAESSKYSELIMSIIVLNTICMAVEHYNEPERMTKILEILNLIFIWIFTIEMIVKMFGIGLRAYFQMGFNCFDCIVVMLSMMELLINDNNSSGNFTVXXXXXXXXXXXXXXPMRHQIAVMLRTTSSVXXXXXXXXXXXXXXXILGMHIFGGKFVFKNRYGKMVLARSNFDSFVWAIVTVFQILTQEDWNLVMYDGIRATTKWASLYFLSLMTIGYYVLFNLLVAILVEGF 1520
            + +S  +S  IM  I++NT+ M VE++ +PE +T  LEI N++F  +F +EM++K+   G   Y +  +N FD I+V++S+ E++   +        FR LR+L++ R +  +R Q+ V+++T  +V TF  LL LF+F F+ILGMH+FG KF  K   G  V  R NFDS +WAIVTVFQILTQEDWN+V+Y+G+ +T+ WA+LYF++LMT G YVLFNLLVAILVEGF
Sbjct:  789 IVDSKYFSRGIMMAILVNTLSMGVEYHEQPEELTNALEISNIVFTSMFALEMLLKLLACGPLGYIRNPYNIFDGIIVVISVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRRQLVVLVKTMDNVATFCTLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGF 1018
The following BLAST results are available for this feature:
BLAST of TCONS_00049810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAC1H9.530e-5248.26Voltage-dependent T-type calcium channel subunit a... [more]
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