TCONS_00049811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049811
Unique NameTCONS_00049811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049811 ID=TCONS_00049811|Name=TCONS_00049811|organism=Clytia hemisphaerica|type=transcript|length=1142bp
tagctaactcaaacaaaatagaaatcaaggaaagtcATTATCAACCAGAA
CCGAATATGGAAAAATGAGATTCaatcaattttaaagaattttgacATCA
TCAACGCGTTTGAATCTAAGATGACACGAGTAATTACCCAAGATTCCGTG
GAAACTTTTGCATGGGTTTTCTTACACAAGAGAAACTTCTTTCGTCGAAA
ATTGATCTCACTCGTGGGATGGAGATGGTTTGAACGTATCGTCATTCTTG
TCATCATACTAAACTGCATCATGTTAGCGCTATACAACCCTATGGATAAG
TATTGCCAAACCAGTCGTTGTTCAATGTTAGAGAAATTGGAACatttcat
tttctcatttttcttgaTCGAAATGCTAGTTAAAATGACTGCTATGGGAA
TTTTTGGAAGCAAAGGATATTTTACTGACCGGTGGAATTTGTTTGATTTC
CTGATTGTGGTTACAGGGATTGTTGAAAGCTTGGGTACGACTGGTGGATT
TTTGACGACGGTTCGATTGTGTCGTATTCTTCGGCCTCTTCGCGCCATCA
ACCGCGTTCCTAATATTCGGATCCTGGTTAATCTCCTCATGGATACAATC
CCAATGCTTGGCAACGTTTTGATTTTGGCGTTCcttgttttcgcttgttt
tggAATCCTCGGTGTACAGTTGTTTCAAGGGAAACTTCGAAGCCGTTGCT
ATTGGTCAGGTGATACGAACGTAGATCATTCTCTCAATGATACTCTGGCT
GTTAATAGAAgCAAATTTCCAGAATTCTACATTCCGACGACGTCAGTAGA
CTATGTTTGTCATCTTCCACATGATTTTGGTTCAAGGTCATGTGATCAAA
TACCCAAACACTACGATTTCAAACTTTGTCAGACGTACTACAATCTATAT
gaccaaaagtttgaaaatgccACCGCTAACAACTCGTGTTTAGATGCACG
CCGGTATTACCGTTCTTGTCGACAAGATGGACCTAATCCGTATTACGGTA
GTGTTTCTTTTGATAATATCGCACTGGCTTTTGTTTTCATATATCAGGTG
GTGACATTAGAAGGATGGAGTGATCTGATGTACCTAGTACAAGATTCTTA
CAGCTCGTATGCCTGGATCTACTTCATCACTTTAATTTCAGT
Run BLAST on NCBI

protein sequence of TCONS_00049811-protein

>TCONS_00049811-protein ID=TCONS_00049811-protein|Name=TCONS_00049811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MTRVITQDSVETFAWVFLHKRNFFRRKLISLVGWRWFERIVILVIILNCI
MLALYNPMDKYCQTSRCSMLEKLEHFIFSFFLIEMLVKMTAMGIFGSKGY
FTDRWNLFDFLIVVTGIVESLGTTGGFLTTVRLCRILRPLRAINRVPNIR
ILVNLLMDTIPMLGNVLILAFLVFACFGILGVQLFQGKLRSRCYWSGDTN
VDHSLNDTLAVNRSKFPEFYIPTTSVDYVCHLPHDFGSRSCDQIPKHYDF
KLCQTYYNLYDQKFENATANNSCLDARRYYRSCRQDGPNPYYGSVSFDNI
ALAFVFIYQVVTLEGWSDLMYLVQDSYSSYAWIYFITLIS
Run BLAST on NCBI

transcript from alignment at scaffold_166:404529..413538-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049811 ID=TCONS_00049811|Name=TCONS_00049811|organism=Clytia hemisphaerica|type=transcript|length=9010bp|location=Sequence derived from alignment at scaffold_166:404529..413538- (Clytia hemisphaerica)
TAGCTAACTCAAACAAAATAGAAATCAAGGAAAGTCATTATCAACCAGAA
CCGAATATGGAAAAATGAGATTCAATCAATTTTAAAGAATTTTGACATCA
TCAACGCGTTTGAATCTAAGATGACACGAGTAATTACCCAAGATTCCGTG
GAAACTTTTGCATGGGTTTTCTTACACAAGAGAAACTTCTTTCGTCGAAA
ATTGATCTCACTCGTGGGATGGAGGTATGAGTCATTTTTTTATTTGGTAA
TTTATAACTTAACTCAAATCCAGGGGATAGACCTTTTCATAAACTACGTC
AGCAGCAACGCTTACTTCGTTTTCATAATAGTTGCTATGGTAATTGAGGC
GCCCAATTTTGTGGTTGGGGTTAATTTTCGTTTTTTCTTTGTAGTATTAC
CAAAACTTCTTTTCCGTCTCGAAGAATCTTTGGTAATACTTTAGAACACG
CTTAAGTACGTTCCTCCACTCTGTTTGCGTTGCAAATAATATTGAGGTAA
TCCAGGATAATCCACTGACCTTCATATAACCCTGGACCAAGCAATATCTG
CCATCTTTGATTGGAGTTTTTTTAGAATTGGTACCCATGGAGGAGAAGCC
ATTGTAATGCTAAAAATTAACGTCTAACGCCGCTACATCATCAAAATAAT
TTGAGGAAAAGTAGACCTAGCGCTCTCGATGCATTTACACCGTTATCGAG
TAGTGCCGACATTAGGGTACCAATCACTGACCTTTATATAACCCTGGACC
AAACAATATCTGCCATCTTTGATTGGAGTTTTTTTAGAATTGGTACCCAA
GGAGAAGCCATTGCAATGCTAAAAATTAACGTCTAACGCCGCTATATCAT
CAAAAGAATTTGAGGAAAAGTAGACCTAGCTCTCTCGATGCATTTACACC
GCTATCGAGTAGTGCCGACATTAGGGTACCAATTTTCAAAAAACTCCGAT
CAAAGATTTTGCTTGGCTGGGATTGAGAAGCTTTGTCCAGGGTTATATAA
AGGTCAGTGGTACCAATATATAAAGGTCAGTGGGATAATCACGACGATCG
ACGATCGGCGAAAAATTTAAGGCTAGTGAAAATACGCTATTTTATTGCTT
GAAACTCACTAGCCTGTTACATTTTTCGGCCGTTTTCGTGATGATGCCGA
TTTGCTAGTTAACCTCACAAATATTTAGAGTGTAGAGTCTGAGAGTCTTG
AGAAGCACTACTGAAAGGTGAAAACAACAGCTTTTTAATTGGATATTCTT
TTTCCGGGAAATCTGTTAGACAAAACTAGAGTGCCTTTTCTGGGTAAATA
TGGGATGAAAATTCCATTTTGCGTATGAAGATAAAAACTTTCTTTTGACC
ATTGTTTTTTGAGAGGGAAAAAGGGGTGACCAAAAAAACACCCCTGTGTC
ACAGACCCGGTGGACACCCCGCCCCGGTGGAAAAATAGGCCAAAAAATCG
TCCCCGGTGGAAAAAATACCCTACATTTTCAACCCCACTGGGAAATTGAC
CTATGATTCTATCCCCATTGAAAATTGAATGGAAAAAATTGGACTCCAAA
ACCATCCCCACTGGAATTTTCGAGCTGGAACCACTGAGGGAAAAGGTTCC
ACCGGGGCACTGAGACAGTGGTGTAAAAAACAAGGGGACAAAAAAAGTCT
CAGTTAATAATTCGTTGCTCTTTTCCTATATTTGCCTCCCAAGTTTTATC
AATTTCTTTAATAAGTAACTATGCTTCTTCTCTTGGCTTAAAAGAAATCT
TACTGCCGGGCTGCTTGGAATCCTGAAAAAGATCAAATCTCAATATTGAT
GGTAGTAAAATCACTTTTCACTGCAATCTTTTTATGTATGTTACTTTTCT
CTCCCCCCCCCCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCAAAAAAAAAGGAA
AAAGTAAGGCTCAAAATGTTGACTTACAAAATAGAAATTTTTAAGAAGCT
ATTCAGCAAAAATCTCAATGTCTGCTTTTGAGGGGGTAGGCTCGGGACCC
TGGAGGAATAAGGTCAGACCACAATATGGTGGTGAAATCACTTTTGACCG
CAATCTTTATATATCTGTTCTCTATTCCCTTCCCACAAGAAGAAAAAGGC
TCAAAACTTTTTAACAGACAAAATAGAAATTCCATAAGGTTCAATTCTGC
AAACAAGCTTGACGAAACCGCCTGTTTTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTTCTATATAGAAATAAAATAGAAAGTAGAT
TCTTATCTGTTACACTCCTCTAAACCACAATATGTACACCGGATCATTTC
GTATTCAGCTTATGTAACTTTAAATTGAAAACTCTTAAGAATTACTAAGT
TTGCAAAATGACGGGTATGTTCGAGCCAAAGTTTGAAAATTGACCCTTAG
AAGACTGAATTTCGAAAATTGTCCATTTTTTGATGTTTTTGCCACCCTCA
AAAAGTCGTTTTTAAGAATCTGTGTCTCTTTGAGGGAGTCAACTTTGGAT
TTTCATAATTTTGGAACCCTTAAAGAGACTCTATTGCTTTTAAATGGTTT
TTGTAACCCTTTGCGGGACTTTCGAGGGTGTGATAAAGGACACTTAAAGA
TCGCAAATACCCGGCACCTATTTTGCCTAAGTATCCCCCGCCCCGGTATA
CACCATGAAAATAATTTCAGGTCCTGTAATTATTTTCCTTTAAAAATACT
CGATATCTACGAAATTTGAAAATTTATTGCGTAGAGGCTATTATGCTACG
TGTTATACGTGAGATAATTTGATTTGAATACACCTTGAGAAAAGCGATAA
TACAAAAACAATAAGAAGACTTTTACTTGTCAGCTCCGTACCTCACCAAA
ACATTGCCTCCTTGTTACTACTGCAAGAAAAAAACTGTTTTATTAGAGCG
GGAGAATCTCAACTCTAAAGATGACCGTTTAGTATTGTTTATAACTTATA
TTGGATCATCCATTCTGGGCGTGCCACGCCCTGTTCTGACGGGATATGGC
GAATATGAAGATCTGACCTGGTTGTTCAGCTGAACTATTCAAAACGATGT
TGCCTAAAAACAAAAGTGACTGTTTTTGTTTTTGACTACCGTTTGATTTT
GATGAGATTGTCCAAAATCTGGATGAAAAACATTCAAGCGGTCCGCCAAC
CTGGGTAGATCTTTTTAAATAGCCATAGCCTTCAAACATGTCATGCGTGG
AGTAACTAGGATCTTCTATGCTGTGAACATTAAATGGACGCTTTATTACC
CAACTGGCACACAACGTTGTTATAACGTTCAAATAACATGGACGTTGTTT
TGACGTTGTGTGTCGTCTGGGTAACGTTTGCCGCTGCTTTGGTAAAGGAT
AGATTTTCTCAGTTTATGGATTTGAAAGAAACGATCTAGTGAAGAGGGCG
ACCTGACCAACTAAAGAAGACGGTAAAGAAGCACTTTTACCGTCCTCGAT
TTTATTGTTCAAAACTGCGTGACTTTCCAAACCGCTCCAGTCCCTTTACT
GTCCTCAAAAGAGAGAGAAGCTGACCCTCCGATATCATCGGACCGGGCCC
TTGCTCGGGATAGTTTCCTACCCCCTACATAGGGAAATCACAACGCTTAC
CAGACATTGTATTCTGTGCTCGCGACACATCAGAGCTGTGCTGTATCGAT
GATGATACTCGAACAGTACTATTATATAAGTACTTAATATATAAACTCCC
TATTTCTTTATTTCAGATGGTTTGAACGTATCGTCATTCTTGTCATCATA
CTAAACTGCATCATGTTAGCGCTATACAACCCTATGGATAAGTATTGCCA
AACCAGTCGTTGTTCAATGTTAGAGAAATTGGAACATTTCATTTTCTCAT
TTTTCTTGATCGAAATGCTAGTTAAAATGACTGCTATGGGAATTTTTGGA
AGCAAAGGATATTTTACTGACCGGTGGAATTTGTTTGATTTCCTGATTGT
GGTTACAGGGTAAGTTTGCTGATCCATTTGGCCAATGATCCCTAACTACT
TGACTATATAAAAGCGTATCAAGTTTTAAAGCTGACTAGTCCTTCATATT
ATTTTCAATTCTGGTCGTTAGCAAGGTGATGTGAATGTTTTGAAATTCGA
ACGTCCGAAAATCTAAGGTAAAATAGAAAACAGCATGGCGGACTAGTCGC
CTATCACGTAAATTAGAAAAACAACTCGATGGAACATACACACACCTTCT
AAGAAGAGTTAAAAATCTTTCCTGGCGCGATCATCCCACTAAAAACACCA
TCTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNACGTGTTCAGTTTGCTGGTCATTGCC
TTCGTGCATCCACAGAAGTCATCTCCTCTCTCTTACTCTGGAAACCCAAG
CGGCTGGTTCAAAGATCGAGAAAGTTAACTTTTACTGACGCAGTTAGCAG
GGACACTGGACTTCTTTTTAGTGACCTGGAGACAGCCATGCGCGACCGCG
ATTCTTGGCGCCAGAGGGTGGAATCCATCATCTCGACCGCGGCCGAAAGA
TGATGATGATGATGATGAACTAGAAGTCACTGAACTAGTATTTGAAGGAA
TATAGCATCTGTGCATTTGCCACACAAAGTCATTGGAACGTTTCTTCTAA
AGCTGTATATGTTGTGGCCACTAAATTGACGTCATTTTAACGTTCTGTGT
GAGCTAGAATATGATCAAAATGGTCTTCGTTCCCAGCGTATTAACTGCTT
TTCGATGTTTACTGATGCCAAATATAAATTATACTGTAAACTAAAGAGTA
ATTTAGATTTACGTACCTTATCGGCCCTTTTTACGCCGGCACTAATTTAA
TGCCGGCCCCTTTAACGCCGACCCTTATTACGCCACAAGCCCAAAAATAA
CGCCAATAAGGGCCGGTGTAAAAAGGGCCGATAAGGTATTTGTTTGATTT
TGCAGTGTAATTTCTCTTCCCGTCTCGGACGGATTTCCGTCTCAGCGAGA
TTACATTAAGAGGCTTCCCCGTCTTTAAATTCTGAATAATTGAAAAGAAA
CTTGTCTTATTTGTTGTGTAAAGTCCATTTCTGTCTGAGGCGAAAAGACT
TTACTTTAAACCCCGATTTTGTTTATTCATTCAAACAGGATTGTTGAAAG
CTTGGGTACGACTGGTGGATTTTTGACGACGGTTCGATTGTGTCGTATTC
TTCGGCCTCTTCGCGCCATCAACCGCGTTCCTAGTAAGATCAATCTTCAC
GGTTCTTCACGTTTTACTCTTAAAATGTTTCCATTTCCGTTTATTTTCAT
TAAAACTAATGTAACTACATTCAACTCTTTTCAATTCGAATTTCTTTTAT
CCGAATTCTATTTTCAGAAAGCTGTAATTCAAACTAAAATATTGGTCCCC
TCAGGTGGAAAGTGGCTTTAATTACTCTCTGTAGTTCGAATCCTTTTCTA
ATTCGAATAAAATTATTGATCCCTTGAAGATCGAACTAGAGAGAGAGTCA
ACGGTGTATTTATTTTTTACTACAGATATTCGGATCCTGGTTAATCTCCT
CATGGATACAATCCCAATGCTTGGCAACGTTTTGATTTTGGCGTTCCTTG
TTTTCGCTTGTTTTGGAATCCTCGGTGTACAGTTGTTTCAAGGGAAACTT
CGAAGCCGTTGCTATTGGTCAGGTGATACGAACGTAGATCATTCTCTCAA
TGATACTCTGGCTGTTAATAGAAGGTAAGTTTTAAGCCTAATACATAAGT
ACAGTAGGTTCGCCAGAGCTTGAAATCTTCTTAAACGACTGTTAACTTCG
TAGCGGTTGCTATTGGTCAGGAGATGCGGATGTTGAGCATTCTCTCGATG
ATACTCTGGCTGCTAATCGAAGGTAAGTTTTAAGGCATCGGGCAAATTGT
CCGGGAGTAATTGTTGAAGGGGAAATTGTCTTAGAAGAATGATCCAGGGT
GGGGCAACTTTCCGGAGAGAAATCGTCCCTGGGACAATTCTCTTTTCACG
GTTTTAAGGCCTCATAAGTGCAGTAGGCTCACAAGAGTTTGAGAAAACTC
ATCTCCATAAACGACTGTCAACATCAACGTCGTAGTCGTTGTTATTGGTC
TTGAGTTAAGTGGATTGGTCTTTCTCTCAATGATACTCTAGCTGTTAATA
GAAGGTAGGTTTAAGGCCTCGTTATTTAGAAGGTTCACCCAAGTTTCTTG
GTTCACCAGAGCTTAAAATGCTGAGCTCGACTGTTAACTTCGTAGTGGTT
GTCATTGATGCTATCTAGGCTTTTCCATGTTGATAACAACGTTGTTTCAA
CGCTCTTATAGCGTTATATATGGACTTTACAGTCCGTGCAACTTTTAAAA
AGACTCTCTCTACAAATCGAAGATTCTATTATCGGACCAAGATATCTTTT
AAATTTAGAACACATCTCTCCATAGCTCAAACATTCCTCATTAAAGAGGA
ACTTGATTTCTAGGATATATATTTTGCCCAGAAATCAAATCTTAATATCA
TACAATTCATCACCAAAATATACTTCAATGTCTTATCATTGATGTTTGTA
TCATAAATACACACTCTTTGATAACCATTCCTTATGAATGATCGTCTTTC
TATATTCAGCAAATTTCCAGAATTCTACATTCCGACGACGTCAGTAGACT
ATGTTTGTCATCTTCCACATGATTTTGGTTCAAGGTCATGTGATCAAATA
CCCAAACACTACGATTTCAAACTTTGTCAGGTAAATATTATAAAATGAAT
TTTTTTTTTTGATTTTACTATTCTTGATATACATGACGTAATATTTTCTA
TGGAAACACCCTGGTTTTTGCTGTAGTGGCAAATATACATAAGAACACCC
CCTTCTCACAGACCCACTGGGAACCCTTATCAATGGAAAACTTAGCCAAA
ATATCGTTCCTAGTGGAAAAATGTCCTCCATTTTTGTAATAATCAAAAAA
ACCTGCCCTCGCTACAAAATATGATGCCCTCTGAATTTTCTGACTTGTAA
ACAAAAGTATTGAAGTCCCAAGCCATAAAAAAACATGGAAATATCAATCC
CTATCGAGTTTTAGTCCGTTGTTTTTATTTCCACTGGCTGAAAAAATCCT
TCATGGTCTGTGAAAAGGGGGTGTACAAGAGAAAAATTGTTCAAAGTTTA
CCACTACTGGCGAAACCGGGGTGTGTCCGTAGAACATGATAACGTCATGT
TATCATGAATTTCTCGTATCAGACCTTCGGATATTTACTGAATTTTCAGA
ATACTTTAACATTTGAGGTTGGACGAGATGTAAATCTCCTACATACTGAG
GGATAAACTCTGGGATAAAGTAAAGTGCTTTTGCAATTTCTAGAGAAAAT
TAGAAAATCTAGCAAGGTTACAGACTTTCTTTATCTTTTGAATATTAACA
AGATATTCACCCCAACGCAATCGCCAAGAAGTGGCACTCGGAAATATTGA
GTTTTTATTTGTGTGTGGTTTTTAATAGTCGAGGCAGCTTTTTTTTGTTT
ACAGAAGTCCCAACTTTAATTGTCAAGAACCAACCTCGCTCATTATCTGT
TTCTGATGGTTACTGATAGCGCCAGATGATATAATCTCTGGCGTCTATCA
GTAACGTAAATAAAGCCTGGGATACACAGGGACGAGGTTGGTCAAGAACG
TTTCTTTTTTTTCTTTTATCCACAGACGTACTACAATCTATATGACCAAA
AGTTTGAAAATGCCACCGCTAACAACTCGTGTTTAGATGCACGCCGGTAT
TACCGTTCTTGTCGACAAGATGGACCTAATCCGTATTACGGTAGTGTTTC
TTTTGATAATATCGCACTGGCTTTTGTTTTCATATATCAGGTATGTACTC
CCCTTTGATATTGAGCTCTCTAAATATAATAACCATAATGCGGGGGTAAA
ACTTAAATTTTACTTTTACCGGGAAAAAGTCGAGTTAAAAGTTTTTTTTT
TAAATAAGAGTGCCATTGTTTGCTTACTCATCCATTTTAATTCACAAGCT
TTTTCACTATGGATTGACACGGATGTGGAACAAGATTGGTCAGGAAGAAG
AAATGGAAAACTTTTTTTTTTGCTTACATCAGAATAATATAACCATAGGC
AGACACTATCCCGATATGAAATATGTGCCTAATATGAAACGGGAACACTT
TTGTAAAAATAAAAAAGAACATCCGAAGGCTTAAAAAATTTTGGGTGTTC
TTATAAAAAAACGTGTAGTGTAATTTCCACTGACCTTTATATACCCTGGA
CCAAGCCTCTCAATCCCAGCCAAGCAAAATCTTTGATCGGAGTTTTTTGA
AAATTGGTACCCTAATGGCGGCACTACTCGATAGCGGTGTAAATGCATCG
AGAGCGCTAGGTCTACTTTTCCTCAAAATCTTTTGATGATGTAGCGGCGT
TAGACGTTAATTTTTAACATCGCAATGGCTTCTCCTCGGGTACCAAATTC
CAATAAAACTCCAATCAAAGATGGCAGATATTGCTTGATCCAGGGTTATA
TAAAGGTCAGTGGTAATTTCCTTAGAAGGCATAAACGCTCTTATTCGTGA
TAAGCAGCATTGCAATGTCTTCCACGGACCCAACAGCTGATTGGTTGAAA
GTGACGTATTGACTTATTTTACGTTACTTGCAACCAATCAGCTGTCGGGT
CCGTCATGTAATGTCAGAATACCTTCCAATGGCGCATATCATGAATTCTA
TTCTGAACTTTCTAGGTGGTGACATTAGAAGGATGGAGTGATCTGATGTA
CCTAGTACAAGATTCTTACAGCTCGTATGCCTGGATCTACTTCATCACTT
TAATTTCAGT

Coding sequence (CDS) from alignment at scaffold_166:404529..413538-

>TCONS_00049811 ID=TCONS_00049811|Name=TCONS_00049811|organism=Clytia hemisphaerica|type=CDS|length=7140bp|location=Sequence derived from alignment at scaffold_166:404529..413538- (Clytia hemisphaerica)
GTGGTGACATTAGAAGGATGGAGTGATCTGATGTACCTAGTACAAGATTC
TTACAGCTCGTATGCCTGGATCTACTTCATCACTTTAATTTCAACGTACT
ACAATCTATATGACCAAAAGTTTGAAAATGCCACCGCTAACAACTCGTGT
TTAGATGCACGCCGGTATTACCGTTCTTGTCGACAAGATGGACCTAATCC
GTATTACGGTAGTGTTTCTTTTGATAATATCGCACTGGCTTTTGTTTTCA
TATATCAGCAAATTTCCAGAATTCTACATTCCGACGACGTCAGTAGACTA
TGTTTGTCATCTTCCACATGATTTTGGTTCAAGGTCATGTGATCAAATAC
CCAAACACTACGATTTCAAACTTTGTCAGATATTCGGATCCTGGTTAATC
TCCTCATGGATACAATCCCAATGCTTGGCAACGTTTTGATTTTGGCGTTC
CTTGTTTTCGCTTGTTTTGGAATCCTCGGTGTACAGTTGTTTCAAGGGAA
ACTTCGAAGCCGTTGCTATTGGTCAGGTGATACGAACGTAGATCATTCTC
TCAATGATACTCTGGCTGTTAATAGAAGGATTGTTGAAAGCTTGGGTACG
ACTGGTGGATTTTTGACGACGGTTCGATTGTGTCGTATTCTTCGGCCTCT
TCGCGCCATCAACCGCGTTCCTAATGGTTTGAACGTATCGTCATTCTTGT
CATCATACTAAACTGCATCATGTTAGCGCTATACAACCCTATGGATAAGT
ATTGCCAAACCAGTCGTTGTTCAATGTTAGAGAAATTGGAACATTTCATT
TTCTCATTTTTCTTGATCGAAATGCTAGTTAAAATGACTGCTATGGGAAT
TTTTGGAAGCAAAGGATATTTTACTGACCGGTGGAATTTGTTTGATTTCC
TGATTGTGGTTACAGGATGACACGAGTAATTACCCAAGATTCCGTGGAAA
CTTTTGCATGGGTTTTCTTACACAAGAGAAACTTCTTTCGTCGAAAATTG
ATCTCACTCGTGGGATGGAGGTGGTGACATTAGAAGGATGGAGTGATCTG
ATGTACCTAGTACAAGATTCTTACAGCTCGTATGCCTGGATCTACTTCAT
CACTTTAATTTCAACGTACTACAATCTATATGACCAAAAGTTTGAAAATG
CCACCGCTAACAACTCGTGTTTAGATGCACGCCGGTATTACCGTTCTTGT
CGACAAGATGGACCTAATCCGTATTACGGTAGTGTTTCTTTTGATAATAT
CGCACTGGCTTTTGTTTTCATATATCAGCAAATTTCCAGAATTCTACATT
CCGACGACGTCAGTAGACTATGTTTGTCATCTTCCACATGATTTTGGTTC
AAGGTCATGTGATCAAATACCCAAACACTACGATTTCAAACTTTGTCAGA
TATTCGGATCCTGGTTAATCTCCTCATGGATACAATCCCAATGCTTGGCA
ACGTTTTGATTTTGGCGTTCCTTGTTTTCGCTTGTTTTGGAATCCTCGGT
GTACAGTTGTTTCAAGGGAAACTTCGAAGCCGTTGCTATTGGTCAGGTGA
TACGAACGTAGATCATTCTCTCAATGATACTCTGGCTGTTAATAGAAGGA
TTGTTGAAAGCTTGGGTACGACTGGTGGATTTTTGACGACGGTTCGATTG
TGTCGTATTCTTCGGCCTCTTCGCGCCATCAACCGCGTTCCTAATGGTTT
GAACGTATCGTCATTCTTGTCATCATACTAAACTGCATCATGTTAGCGCT
ATACAACCCTATGGATAAGTATTGCCAAACCAGTCGTTGTTCAATGTTAG
AGAAATTGGAACATTTCATTTTCTCATTTTTCTTGATCGAAATGCTAGTT
AAAATGACTGCTATGGGAATTTTTGGAAGCAAAGGATATTTTACTGACCG
GTGGAATTTGTTTGATTTCCTGATTGTGGTTACAGGATGACACGAGTAAT
TACCCAAGATTCCGTGGAAACTTTTGCATGGGTTTTCTTACACAAGAGAA
ACTTCTTTCGTCGAAAATTGATCTCACTCGTGGGATGGAGGTGGTGACAT
TAGAAGGATGGAGTGATCTGATGTACCTAGTACAAGATTCTTACAGCTCG
TATGCCTGGATCTACTTCATCACTTTAATTTCAACGTACTACAATCTATA
TGACCAAAAGTTTGAAAATGCCACCGCTAACAACTCGTGTTTAGATGCAC
GCCGGTATTACCGTTCTTGTCGACAAGATGGACCTAATCCGTATTACGGT
AGTGTTTCTTTTGATAATATCGCACTGGCTTTTGTTTTCATATATCAGCA
AATTTCCAGAATTCTACATTCCGACGACGTCAGTAGACTATGTTTGTCAT
CTTCCACATGATTTTGGTTCAAGGTCATGTGATCAAATACCCAAACACTA
CGATTTCAAACTTTGTCAGATATTCGGATCCTGGTTAATCTCCTCATGGA
TACAATCCCAATGCTTGGCAACGTTTTGATTTTGGCGTTCCTTGTTTTCG
CTTGTTTTGGAATCCTCGGTGTACAGTTGTTTCAAGGGAAACTTCGAAGC
CGTTGCTATTGGTCAGGTGATACGAACGTAGATCATTCTCTCAATGATAC
TCTGGCTGTTAATAGAAGGATTGTTGAAAGCTTGGGTACGACTGGTGGAT
TTTTGACGACGGTTCGATTGTGTCGTATTCTTCGGCCTCTTCGCGCCATC
AACCGCGTTCCTAATGGTTTGAACGTATCGTCATTCTTGTCATCATACTA
AACTGCATCATGTTAGCGCTATACAACCCTATGGATAAGTATTGCCAAAC
CAGTCGTTGTTCAATGTTAGAGAAATTGGAACATTTCATTTTCTCATTTT
TCTTGATCGAAATGCTAGTTAAAATGACTGCTATGGGAATTTTTGGAAGC
AAAGGATATTTTACTGACCGGTGGAATTTGTTTGATTTCCTGATTGTGGT
TACAGGATGACACGAGTAATTACCCAAGATTCCGTGGAAACTTTTGCATG
GGTTTTCTTACACAAGAGAAACTTCTTTCGTCGAAAATTGATCTCACTCG
TGGGATGGAGGTGGTGACATTAGAAGGATGGAGTGATCTGATGTACCTAG
TACAAGATTCTTACAGCTCGTATGCCTGGATCTACTTCATCACTTTAATT
TCAACGTACTACAATCTATATGACCAAAAGTTTGAAAATGCCACCGCTAA
CAACTCGTGTTTAGATGCACGCCGGTATTACCGTTCTTGTCGACAAGATG
GACCTAATCCGTATTACGGTAGTGTTTCTTTTGATAATATCGCACTGGCT
TTTGTTTTCATATATCAGCAAATTTCCAGAATTCTACATTCCGACGACGT
CAGTAGACTATGTTTGTCATCTTCCACATGATTTTGGTTCAAGGTCATGT
GATCAAATACCCAAACACTACGATTTCAAACTTTGTCAGATATTCGGATC
CTGGTTAATCTCCTCATGGATACAATCCCAATGCTTGGCAACGTTTTGAT
TTTGGCGTTCCTTGTTTTCGCTTGTTTTGGAATCCTCGGTGTACAGTTGT
TTCAAGGGAAACTTCGAAGCCGTTGCTATTGGTCAGGTGATACGAACGTA
GATCATTCTCTCAATGATACTCTGGCTGTTAATAGAAGGATTGTTGAAAG
CTTGGGTACGACTGGTGGATTTTTGACGACGGTTCGATTGTGTCGTATTC
TTCGGCCTCTTCGCGCCATCAACCGCGTTCCTAATGGTTTGAACGTATCG
TCATTCTTGTCATCATACTAAACTGCATCATGTTAGCGCTATACAACCCT
ATGGATAAGTATTGCCAAACCAGTCGTTGTTCAATGTTAGAGAAATTGGA
ACATTTCATTTTCTCATTTTTCTTGATCGAAATGCTAGTTAAAATGACTG
CTATGGGAATTTTTGGAAGCAAAGGATATTTTACTGACCGGTGGAATTTG
TTTGATTTCCTGATTGTGGTTACAGGATGACACGAGTAATTACCCAAGAT
TCCGTGGAAACTTTTGCATGGGTTTTCTTACACAAGAGAAACTTCTTTCG
TCGAAAATTGATCTCACTCGTGGGATGGAGGTGGTGACATTAGAAGGATG
GAGTGATCTGATGTACCTAGTACAAGATTCTTACAGCTCGTATGCCTGGA
TCTACTTCATCACTTTAATTTCAACGTACTACAATCTATATGACCAAAAG
TTTGAAAATGCCACCGCTAACAACTCGTGTTTAGATGCACGCCGGTATTA
CCGTTCTTGTCGACAAGATGGACCTAATCCGTATTACGGTAGTGTTTCTT
TTGATAATATCGCACTGGCTTTTGTTTTCATATATCAGCAAATTTCCAGA
ATTCTACATTCCGACGACGTCAGTAGACTATGTTTGTCATCTTCCACATG
ATTTTGGTTCAAGGTCATGTGATCAAATACCCAAACACTACGATTTCAAA
CTTTGTCAGATATTCGGATCCTGGTTAATCTCCTCATGGATACAATCCCA
ATGCTTGGCAACGTTTTGATTTTGGCGTTCCTTGTTTTCGCTTGTTTTGG
AATCCTCGGTGTACAGTTGTTTCAAGGGAAACTTCGAAGCCGTTGCTATT
GGTCAGGTGATACGAACGTAGATCATTCTCTCAATGATACTCTGGCTGTT
AATAGAAGGATTGTTGAAAGCTTGGGTACGACTGGTGGATTTTTGACGAC
GGTTCGATTGTGTCGTATTCTTCGGCCTCTTCGCGCCATCAACCGCGTTC
CTAATGGTTTGAACGTATCGTCATTCTTGTCATCATACTAAACTGCATCA
TGTTAGCGCTATACAACCCTATGGATAAGTATTGCCAAACCAGTCGTTGT
TCAATGTTAGAGAAATTGGAACATTTCATTTTCTCATTTTTCTTGATCGA
AATGCTAGTTAAAATGACTGCTATGGGAATTTTTGGAAGCAAAGGATATT
TTACTGACCGGTGGAATTTGTTTGATTTCCTGATTGTGGTTACAGGATGA
CACGAGTAATTACCCAAGATTCCGTGGAAACTTTTGCATGGGTTTTCTTA
CACAAGAGAAACTTCTTTCGTCGAAAATTGATCTCACTCGTGGGATGGAG
GTGGTGACATTAGAAGGATGGAGTGATCTGATGTACCTAGTACAAGATTC
TTACAGCTCGTATGCCTGGATCTACTTCATCACTTTAATTTCAACGTACT
ACAATCTATATGACCAAAAGTTTGAAAATGCCACCGCTAACAACTCGTGT
TTAGATGCACGCCGGTATTACCGTTCTTGTCGACAAGATGGACCTAATCC
GTATTACGGTAGTGTTTCTTTTGATAATATCGCACTGGCTTTTGTTTTCA
TATATCAGCAAATTTCCAGAATTCTACATTCCGACGACGTCAGTAGACTA
TGTTTGTCATCTTCCACATGATTTTGGTTCAAGGTCATGTGATCAAATAC
CCAAACACTACGATTTCAAACTTTGTCAGATATTCGGATCCTGGTTAATC
TCCTCATGGATACAATCCCAATGCTTGGCAACGTTTTGATTTTGGCGTTC
CTTGTTTTCGCTTGTTTTGGAATCCTCGGTGTACAGTTGTTTCAAGGGAA
ACTTCGAAGCCGTTGCTATTGGTCAGGTGATACGAACGTAGATCATTCTC
TCAATGATACTCTGGCTGTTAATAGAAGGATTGTTGAAAGCTTGGGTACG
ACTGGTGGATTTTTGACGACGGTTCGATTGTGTCGTATTCTTCGGCCTCT
TCGCGCCATCAACCGCGTTCCTAATGGTTTGAACGTATCGTCATTCTTGT
CATCATACTAAACTGCATCATGTTAGCGCTATACAACCCTATGGATAAGT
ATTGCCAAACCAGTCGTTGTTCAATGTTAGAGAAATTGGAACATTTCATT
TTCTCATTTTTCTTGATCGAAATGCTAGTTAAAATGACTGCTATGGGAAT
TTTTGGAAGCAAAGGATATTTTACTGACCGGTGGAATTTGTTTGATTTCC
TGATTGTGGTTACAGGATGACACGAGTAATTACCCAAGATTCCGTGGAAA
CTTTTGCATGGGTTTTCTTACACAAGAGAAACTTCTTTCGTCGAAAATTG
ATCTCACTCGTGGGATGGAGGTGGTGACATTAGAAGGATGGAGTGATCTG
ATGTACCTAGTACAAGATTCTTACAGCTCGTATGCCTGGATCTACTTCAT
CACTTTAATTTCAACGTACTACAATCTATATGACCAAAAGTTTGAAAATG
CCACCGCTAACAACTCGTGTTTAGATGCACGCCGGTATTACCGTTCTTGT
CGACAAGATGGACCTAATCCGTATTACGGTAGTGTTTCTTTTGATAATAT
CGCACTGGCTTTTGTTTTCATATATCAGCAAATTTCCAGAATTCTACATT
CCGACGACGTCAGTAGACTATGTTTGTCATCTTCCACATGATTTTGGTTC
AAGGTCATGTGATCAAATACCCAAACACTACGATTTCAAACTTTGTCAGA
TATTCGGATCCTGGTTAATCTCCTCATGGATACAATCCCAATGCTTGGCA
ACGTTTTGATTTTGGCGTTCCTTGTTTTCGCTTGTTTTGGAATCCTCGGT
GTACAGTTGTTTCAAGGGAAACTTCGAAGCCGTTGCTATTGGTCAGGTGA
TACGAACGTAGATCATTCTCTCAATGATACTCTGGCTGTTAATAGAAGGA
TTGTTGAAAGCTTGGGTACGACTGGTGGATTTTTGACGACGGTTCGATTG
TGTCGTATTCTTCGGCCTCTTCGCGCCATCAACCGCGTTCCTAATGGTTT
GAACGTATCGTCATTCTTGTCATCATACTAAACTGCATCATGTTAGCGCT
ATACAACCCTATGGATAAGTATTGCCAAACCAGTCGTTGTTCAATGTTAG
AGAAATTGGAACATTTCATTTTCTCATTTTTCTTGATCGAAATGCTAGTT
AAAATGACTGCTATGGGAATTTTTGGAAGCAAAGGATATTTTACTGACCG
GTGGAATTTGTTTGATTTCCTGATTGTGGTTACAGGATGACACGAGTAAT
TACCCAAGATTCCGTGGAAACTTTTGCATGGGTTTTCTTACACAAGAGAA
ACTTCTTTCGTCGAAAATTGATCTCACTCGTGGGATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031574XLOC_031574Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049811-proteinTCONS_00049811-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049811-exon-scaffold_166-1575043694:413315..413538TCONS_00049811-exon-scaffold_166-1575043694:413315..413538Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1575043694:409480..409722TCONS_00049811-exon-scaffold_166-1575043694:409480..409722Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1575043694:408106..408200TCONS_00049811-exon-scaffold_166-1575043694:408106..408200Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1575043694:407615..407813TCONS_00049811-exon-scaffold_166-1575043694:407615..407813Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1575043694:406609..406729TCONS_00049811-exon-scaffold_166-1575043694:406609..406729Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1575043694:405499..405663TCONS_00049811-exon-scaffold_166-1575043694:405499..405663Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1575043694:404529..404623TCONS_00049811-exon-scaffold_166-1575043694:404529..404623Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1510915933:413315..413538TCONS_00049811-exon-scaffold_166-1510915933:413315..413538Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1510915933:409480..409722TCONS_00049811-exon-scaffold_166-1510915933:409480..409722Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1510915933:408106..408200TCONS_00049811-exon-scaffold_166-1510915933:408106..408200Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1510915933:407615..407813TCONS_00049811-exon-scaffold_166-1510915933:407615..407813Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1510915933:406609..406729TCONS_00049811-exon-scaffold_166-1510915933:406609..406729Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1510915933:405499..405663TCONS_00049811-exon-scaffold_166-1510915933:405499..405663Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1510915933:404529..404623TCONS_00049811-exon-scaffold_166-1510915933:404529..404623Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1491911889:413315..413538TCONS_00049811-exon-scaffold_166-1491911889:413315..413538Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1491911889:409480..409722TCONS_00049811-exon-scaffold_166-1491911889:409480..409722Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1491911889:408106..408200TCONS_00049811-exon-scaffold_166-1491911889:408106..408200Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1491911889:407615..407813TCONS_00049811-exon-scaffold_166-1491911889:407615..407813Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1491911889:406609..406729TCONS_00049811-exon-scaffold_166-1491911889:406609..406729Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1491911889:405499..405663TCONS_00049811-exon-scaffold_166-1491911889:405499..405663Clytia hemisphaericaexon
TCONS_00049811-exon-scaffold_166-1491911889:404529..404623TCONS_00049811-exon-scaffold_166-1491911889:404529..404623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:404529..413538 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0760509	0.111242	0	0	0.153838	0.0405217	3.51992	4.4395	2.53142	2.77836	4.81561	3.54546	1.18861	0.814166	0.712539	0.602463	0.399638	1.25811	0.242531	1.18436	1.91179	1.23736	0.479592	0.951313	2.20462	2.22262	4.22338	4.11778	0.675285	0.473006
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00049811 vs. Swiss-Prot (Human)
Match: CAC1H (Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4)

HSP 1 Score: 238.039 bits (606), Expect = 1.201e-68
Identity = 142/323 (43.96%), Postives = 200/323 (61.92%), Query Frame = 1 
Query:  193 RRKLISLVGWRWFERIVILVIILNCIMLALYNPM-DKYCQTSRCSMLEKLEHFIFSFFLIEMLVKMTAMGIFGSKGYFTDRWNLFDFLIVVTGIVE-SLGTTGGFLTTVRLCRILRPLRAINRVPNIRILVNLLMDTIPMLGNVLILAFLVFACFGILGVQLFQGKLRSRCYWSGDTNVDHSLNDTLAVNRSKFPEFYIPTTSVD---YVCHLPHDFGSRSCDQIPKHYDFKL-CQTYYNLYDQKFEN--ATANNSCLDARRYYRSCRQDGPNPYYGSVSFDNIALAFVFIYQVVTLEGWSDLMYLVQDSYSSYAWIYFITLI 1137
            R   + LV   WFE + +LVI+LNC+ L ++ P  D  C + RC++LE  + FIF+FF +EM++KM A+G+FG K Y  D WN  DF IVV G++E SL      L+ +R  R+LRPLRAINRVP++RILV LL+DT+PMLGNVL+L F VF  FGI+GVQL+ G LR+RC+      +D +    +  N   F   Y  T   +   ++C    D G + C  IP   + ++ C   +  Y Q        A N+C++  +YY  CR    NP+ G+++FDNI  A++ I+QV+TLEGW D+MY V D++S Y +IYFI LI
Sbjct:   90 RSWCLRLVCNPWFEHVSMLVIMLNCVTLGMFRPCEDVECGSERCNILEAFDAFIFAFFAVEMVIKMVALGLFGQKCYLGDTWNRLDFFIVVAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCF------LDSAF---VRNNNLTFLRPYYQTEEGEENPFICSSRRDNGMQKCSHIPGRRELRMPCTLGWEAYTQPQAEGVGAARNACINWNQYYNVCRSGDSNPHNGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLI 403

HSP 2 Score: 92.4337 bits (228), Expect = 5.108e-20
Identity = 65/191 (34.03%), Postives = 108/191 (56.54%), Query Frame = 1 
Query:  145 SVETFAWVFLHKRNFFRRKLISLVGWRWFERIVILVIILNCIMLALYNPMDKYCQTSRCSMLEKLEHFIFS-FFLIEMLVKMTAMGIF-GSKGYFTDRWNLFDFLIVVTGIVE---SLGTTGG-----FLTTVRLCRILRPLRAINRVPNIRILVNLLMDTIPMLGNVLILAFLVFACFGILGVQLFQGKL 687
            S E +A      +N FR     ++  + F+ +V++ I LNC+ +AL  P      T R  +   + ++IF+  F+ EM+VK+ A+G+  G   Y    WNL D L+V+  +V+   ++ + GG      L  +RL R LRPLR I+R P ++++V  L+ ++  +GN++++    F  FGILGVQLF+GK 
Sbjct: 1268 SREAWALYLFSPQNRFRVSCQKVITHKMFDHVVLVFIFLNCVTIALERPDIDPGSTERVFL--SVSNYIFTAIFVAEMMVKVVALGLLSGEHAYLQSSWNLLDGLLVLVSLVDIVVAMASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFKGKF 1456
The following BLAST results are available for this feature:
BLAST of TCONS_00049811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAC1H1.201e-6843.96Voltage-dependent T-type calcium channel subunit a... [more]
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