TCONS_00049844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049844
Unique NameTCONS_00049844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049844 ID=TCONS_00049844|Name=TCONS_00049844|organism=Clytia hemisphaerica|type=transcript|length=527bp
NTTCCTGATTCGCAATCAGTACAAGAAAAGGGGTTTCAATGTCGACATTG
CACAAGAAGCTTTTCTTCCAAAACTGGTCGAGCAAATCATGAAAATGCCC
ATGCCCGAAAGAATCGAGAAGAATTTCCTGCAATGCAAAATTCAACCGTG
GAGGAAGTGATGTCACAACCTCATGCGAATCCCGTGCCACACCCACAACC
TCAAATAAACCATATATGGAGAAACCACGCAAAGGAAGACATCTATCAAA
TATTCCGAGCCATGTATAGTGAAATCGTGCTTTGGAGACGAAACATCTTT
CTCGTCCCGAGTGGTGCAAATGGAAAGAGGTTTGTCGGCGAAACAACCAA
ATGGCTGCAGCGATGGGTCGATGATTCCGAGTCGTACAAGAATATTGCCC
TCACCGTTGTAATGGTCATACCCGCACTGCTTCTCCAGAAACCCAGCTAC
AAATCAACCGCTAAGCAACACAGTTTATGTCTGGAAAGAAGATTTCGGTT
ATGGGACGAGGGTGATTTTGACGCACT
Run BLAST on NCBI

protein sequence of TCONS_00049844-protein

>TCONS_00049844-protein ID=TCONS_00049844-protein|Name=TCONS_00049844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
XPDSQSVQEKGFQCRHCTRSFSSKTGRANHENAHARKNREEFPAMQNSTV
EEVMSQPHANPVPHPQPQINHIWRNHAKEDIYQIFRAMYSEIVLWRRNIF
LVPSGANGKRFVGETTKWLQRWVDDSESYKNIALTVVMVIPALLLQKPSY
KSTAKQHSLCLERRFRLWDEGDFDA
Run BLAST on NCBI

transcript from alignment at scaffold_166:487502..488028

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049844 ID=TCONS_00049844|Name=TCONS_00049844|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at scaffold_166:487502..488028 (Clytia hemisphaerica)
AGTGCGTCAAAATCACCCTCGTCCCATAACCGAAATCTTCTTTCCAGACA
TAAACTGTGTTGCTTAGCGGTTGATTTGTAGCTGGGTTTCTGGAGAAGCA
GTGCGGGTATGACCATTACAACGGTGAGGGCAATATTCTTGTACGACTCG
GAATCATCGACCCATCGCTGCAGCCATTTGGTTGTTTCGCCGACAAACCT
CTTTCCATTTGCACCACTCGGGACGAGAAAGATGTTTCGTCTCCAAAGCA
CGATTTCACTATACATGGCTCGGAATATTTGATAGATGTCTTCCTTTGCG
TGGTTTCTCCATATATGGTTTATTTGAGGTTGTGGGTGTGGCACGGGATT
CGCATGAGGTTGTGACATCACTTCCTCCACGGTTGAATTTTGCATTGCAG
GAAATTCTTCTCGATTCTTTCGGGCATGGGCATTTTCATGATTTGCTCGA
CCAGTTTTGGAAGAAAAGCTTCTTGTGCAATGTCGACATTGAAACCCCTT
TTCTTGTACTGATTGCGAATCAGGAAN

Coding sequence (CDS) from alignment at scaffold_166:487502..488028

>TCONS_00049844 ID=TCONS_00049844|Name=TCONS_00049844|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_166:487502..488028 (Clytia hemisphaerica)
TGCGTCAAAATCACCCTCGTCCCATAACCGAAATCTTCTTTCCAGACATA
AACTGTGTTGCTTAGCGGTTGATTTGTAGCTGGGTTTCTGGAGAAGCAGT
GCGGGTATGACCATTACAACGGTGAGGGCAATATTCTTGTACGACTCGGA
ATCATCGACCCATCGCTGCAGCCATTTGGTTGTTTCGCCGACAAACCTCT
TTCCATTTGCACCACTCGGGACGAGAAAGATGTTTCGTCTCCAAAGCACG
ATTTCACTATACATGGCTCGGAATATTTGATAGATGTCTTCCTTTGCGTG
GTTTCTCCATATATGGTTTATTTGAGGTTGTGGGTGTGGCACGGGATTCG
CATGAGGTTGTGACATCACTTCCTCCACGGTTGAATTTTGCATTGCAGGA
AATTCTTCTCGATTCTTTCGGGCATGGGCATTTTCATGATTTGCTCGACC
AGTTTTGGAAGAAAAGCTTCTTGTGCAATGTCGACATTGAAACCCCTTTT
CTTGTACTGATTGCGAATCAGGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031603XLOC_031603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049844-exon-scaffold_166-1491911889:487502..488028TCONS_00049844-exon-scaffold_166-1491911889:487502..488028Clytia hemisphaericaexon
TCONS_00049844-exon-scaffold_166-1510915933:487502..488028TCONS_00049844-exon-scaffold_166-1510915933:487502..488028Clytia hemisphaericaexon
TCONS_00049844-exon-scaffold_166-1575043694:487502..488028TCONS_00049844-exon-scaffold_166-1575043694:487502..488028Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049844-proteinTCONS_00049844-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:487502..488028 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13433	4.43055	1.8502	1.71732	4.59025	3.18321	6.40865	4.16632	5.95808	6.40121	4.4979	3.52657	3.87401	4.34373	3.93835	5.2709	5.06809	4.85313	3.4394	3.42505	3.23794	3.89206	3.20306	3.67433	1.83136	2.82607	2.05376	1.20248	0.412515	0.358359
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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