TCONS_00049812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049812
Unique NameTCONS_00049812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049812 ID=TCONS_00049812|Name=TCONS_00049812|organism=Clytia hemisphaerica|type=transcript|length=1306bp
AACGGCAAGAAACTGTGCAGGCTTGCAGGATCTGCAGATTTTTTAAATCC
CAATTTTGCAACAGCAAGGACTTCAATTCTTTGATGTAATAGGTATTCCT
TTGATTTTAATTTGACAGAATTCTTTCTAAAGTTATGGCAGGAGTGACAA
CTTTTTTCTCTCGCAAGTTGATTGATGGGAAACAtctctcaaaattttca
aaaagtgtcagATTGCTTTTGCATGATGGAAAGGTAGCCTCTCGTTCAAT
GAGCACAGACTTGGATCTATCTGGAATTTACCCACCAATTCCAACACCTT
TCAAAGCTAATGAGGATGTTGATTGGCATTCTTTAAAGTCTAACTTGGAC
AAATGGAGTGCTGTCCCATTTAAAGGATATGTTGTACAAGGTTCCAATGG
AGAATATGTCTCCCTTTCTacagaagaaaaaattgacatGGTCCAATTTG
TAGCTGAAAATGTTGAAAGCAATAAAACCATCCTTGTTGGGTCTGGTTGT
GAAGGTACAAAGGAGACTATTGAGCTCACAAATGAAATGGCAAAAAAAGG
AGCTCATGCAGCCTTGGTTGTTACCCCTGCTTTCTTCAAAAACCGAATGA
ATTCTGCTGCAATGATCAACCACTACACACAGGTTGCAGATGCTTCAAGT
ATTCCCGTCATTTTGTACAACGTTCCTTCAAATACTGGTTTTGAATTTCC
AGTAGATGCCATCATAAAACTTTCCGAACATCCTAATATCATTGGTTTCA
AAGATAGTGGTGGAAACATTACAAACATTGGTCACATCATAAGTGAAACA
AGAGAAAGAGGATTCCAAGTATTAGCTGGAGGGGCCAGTTTCTTGATGGC
ATCTATGAATCTAGGAGCTGTCGGTGGTATCTGTGCGTTAGCCAATATTC
TCGGACAAGAATGTTGTGATTTGGCTACGTTGTGCAAAGAAGGTCGTTTA
GATGAAGCAAGGGAACTCCAACTGAAATTGATCGCCCCCAATCAAGCAGT
TACTCGAAAATACAATGTACCAGCTTTGAAATACGCAATGGACTTATGTG
GTTATTACGGTGGCCCATCACGGTCGCCACTTGGTCCACTCAATGAACTA
GAAATGAAGGATGTCAAGAATTGTTTCAAGGAATATTGCTAAAAGATAGG
AATATAACATGTCGCAATAAATGCATTTAAAAAACCAAGCTCCTTGCTTT
GAACTAACAAAATCAATCTTCATTACACCCAAAAGCTACGAAAGATGTTT
AACTAGCATATGGTCCTTTTGAGAAAACGTCAAATACGATTGATGCTTCT
ATGCCA
Run BLAST on NCBI

protein sequence of TCONS_00049812-protein

>TCONS_00049812-protein ID=TCONS_00049812-protein|Name=TCONS_00049812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MAGVTTFFSRKLIDGKHLSKFSKSVRLLLHDGKVASRSMSTDLDLSGIYP
PIPTPFKANEDVDWHSLKSNLDKWSAVPFKGYVVQGSNGEYVSLSTEEKI
DMVQFVAENVESNKTILVGSGCEGTKETIELTNEMAKKGAHAALVVTPAF
FKNRMNSAAMINHYTQVADASSIPVILYNVPSNTGFEFPVDAIIKLSEHP
NIIGFKDSGGNITNIGHIISETRERGFQVLAGGASFLMASMNLGAVGGIC
ALANILGQECCDLATLCKEGRLDEARELQLKLIAPNQAVTRKYNVPALKY
AMDLCGYYGGPSRSPLGPLNELEMKDVKNCFKEYC
Run BLAST on NCBI

transcript from alignment at scaffold_166:505530..511090-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049812 ID=TCONS_00049812|Name=TCONS_00049812|organism=Clytia hemisphaerica|type=transcript|length=5561bp|location=Sequence derived from alignment at scaffold_166:505530..511090- (Clytia hemisphaerica)
AACGGCAAGAAACTGTGCAGGCTTGCAGGATCTGCAGATTTTTTAAATCC
CAATTTTGCAACAGCAAGGACTTCAATTCTTTGATGTAATAGGTATTCCT
TTGATTTTAATTTGACAGAATTCTTTCTAAAGTTATGGCAGGAGTGACAA
CTTTTTTCTCTCGCAAGTTGATTGATGGGAAACATCTCTCAAAATTTTCA
AAAAGTGTCAGATTGCTTTTGCATGATGGAAAGGTAGCCTCTCGTTCAAT
GAGCACAGACTTGGATCTATCTGGAATTTACCCACCAATTCCAACACCTT
TCAAAGCTAATGAGGATGTTGATTGGCATTCTTTAAAGTCTAACTTGGAC
AAATGGAGTGCTGTCCCATTTAAAGGTTTTACAGCTATATATTTCTTTTG
TCTTTCACTTTTACCAGAATTATATTTGACATTTGATATGACATATAATC
AAATTTTAAAAGTGGGTGTTGAAATGCTTAGAATATTAAATCAATCTTTT
GAATTGTNACCCTGATATTTGAAAAAAAATGTTTTTGGGCAAATTTGGGC
AAAAAAACGGCTAAAAAGGGTTTTTGGACTTTGTGAAATATTGGATCATT
GTTTTTTTCTTAATTTTTGCATGAAAGTAGGTAAAAGATGGCCAGGGGGG
GTACCAAGTCATAGGGTACTAACTTGATTTTTGGATTTTTTTCCAAAAAA
TTAGACCACCACCCTTTTTAGTACACTGTACTAACTTTTTTTCACGGTCG
GNATATTTCTTTTGTCTTTCACTTTTACCAGAATTATATTTGACATTTGA
TATGACATATAATCAAATTTTAAAAGTGGGTGTTGAAATGCTTAGAATAT
TAAATCAATCTTTTGAATTGTGTATGTCCAATTGTTTCAAAATAATCTCG
AATTCCAGCAGGCAACTTGAGAACTCCTATATGGTAGATGTTTTCTTTTT
AAAGTATACATTTATTTTAGTTTTGTGAGCTGTGTAATCCATTCACATAC
CGGGTGCAGCAGAAAAAACTTTGGACGTTTGGCGAGCCAACTGAGGCCGA
ACAAAGTCTTGTTTAGACTCAAAACCACTTTTATTAGAAAGAGGACATGC
TAACTTAAATTTTGCGGTATAACTTTTTAAGNTTTTTAGTGCACTGTACT
AACTTTTTTTCACAGTCGGGGCTTTGACACCACCCTTTTAGTACACTGTA
CTAACTTTTTTCACGGTCGGGGCTTTGACATCACCCTTTTAGTACAATGT
ACTAACTTTCTTCCACAGCCAGAGCTTTGATACTACCCTTTTAGTACACA
GTACTGACGTTTTTCCACAACTAGATTTTTATTACCACCCTTTCAGTACA
CTGTACTGACTTCTCCATGACCGGATTTTTGATACTACCCTTTTAGTACA
CAGTACTGACGTTTTTCCACAACTAGATTTTTATTACCACCCTTTCAGTA
CACTGTACTGACTTCTCCATGACCGGATTTTTGATACTACCCTTTTAGTA
CACTGTACTAGCTGTTTTTTCGATCAGATAAGTTTAGAAACCACCCCTTA
TAGTGCACTGTTCTAGTTTCTTCTTAGCTAGATAAGTTTAATTGCCACCA
TATACAAAGGTTTTGAAGCATTTTGCTAGGAAAAGCACCAAATTATATAA
AAGGAAAGATTTGAATATTAANCTTTCATATTTATCAGGATATGTTGTAC
AAGGTTCCAATGGAGAATATGTCTCCCTTTCTACAGAAGAAAAAATTGAC
ATGGTCCAATTTGTAGCTGAAAATGTTGAAAGCAATAAAACCATCCTTGT
TGGGTCTGGTTGTGAAGGTAAATTTTTTCCTATAAATTGTATTTCTTTCA
AAGTGTGAACAAATTATTTTATTTTGTCTTCATTTCCANTCTCCATAAAT
TGTATTTTCTTTCAAAGTGTGAACAAACTATTTTATTTTGTCTTCATTCC
CAATGGGGAGGGGGTACTTAGAAAAGGGTACAGGTATGTGCCGCCATTAA
GGGTATCTTTTTTGGACTTCCAAAGTCCCACTTATGTGTTGGAAAAATCA
GAAAAGCAAATTTAAGTCCCACTAAGGGTCCGGAAATTTGGTCAAGTAAG
TCCAAATAAAGATCGTAAAATTTTCAACACTTTTCTTTTTTTCCTCCTTT
TTAGTCCCGCTAACGATTCAAGGGTCGAAAGTTGGGCGGCACATACCTAC
AGTACCTAGTACCCTAGTACCCCCCAGGTCTTCATTATATGCTCACATTT
TTACTTTGTTTATTATATGTTATAAAATTTTTAATTCAGCAACAAACTAT
GTTTGTAGAAAAACAGAAAAAGTCAATAATGCAATAATTTATCTTTTAAA
GTAGATTTTTTAATAAAATTTTGCGTGGATATTATTTTATGATTTGAGTT
AATTTTTCACTATTTTCATGAAGATCAGCAATTAGTCCAATTTGTTCTGC
ACAGAAAATAGTTTTGGGTGGAACCTAAGAAAATTAAAGAAATTGGGTAA
AGAGGAGAAAAAGGCAAATTTGCATATATTCCACTTTGGCACTTGATAAT
TATGAGAGAAATAATTTCCATTTTACCAGCTGATTTTCTTCTTATTAATT
TATTATATGTTTTTTTTATCACAGGTACAAAGGAGACTATTGAGCTCACA
AATGAAATGGCAAAAAAAGGAGCTCATGCAGCCTTGGTTGTTACCCCTGC
TTTCTTCAAAAACCGAATGAATTCTGCTGCAATGATCAACCACTACACAC
AGGTTTAAAGGATAATAAAATCAGTCTTTCATATAGTGGTAGTGTCATTC
ATGTTTATAAAAGAATTTATAGAATTTCTGTCCAACTATCTTCTTTCAGG
GGATTGGGTGGCAGTATAGCATATGCATTTCGTCCTTGACTCAGCACTGC
ATACTGCTGACAGTATATATGGAGCCAATATCGACTTCAGAGAAACAGTG
TCATTTTCGTGTTTATATTGATCTCATTTATACTATGAATTTATTTTGTA
GTCAGTGTAGTTGAAGTTGTAATGCTACACTTTAGGAGTTGCTCTTGAAG
CCTTTTAGATTTGTTTATTTTTTATTCTACTCTTAGGTTGCAGATGCTTC
AAGTATTCCCGTCATTTTGTACAACGTTCCTTCAAATACTGGTTTTGAAT
TTCCAGTAGATGCCATCATAAAACTTTCCGAACATCCTAATATCATTGGT
TTCAAAGATAGTGGTGGAAACGTAATAATTTAATGTTTTTAATTTCTAGT
GATTTTAAGTTATCTTCAGTCTCTTCTTATTTCAAAAAGATTATTCATTT
TTATTACACCCTTGTCTTGTGATCAGGTGAACATAAGAATGAAGAGCTAA
GTACCAATCAGAATAAGAAAAAATGGGGGTTTCAAATTCTATTGTGTAGA
TATTGAAAAGTAAGGATTCTCAAAATTTAAGTGCGTATGCCAAAGATAAA
ACTTCACCTTAACTTCAACTTAAACTGAGGGGGGCTTCAGCATAGCTTTC
AAACGGGTATAAACTTTCAGGGTACTTCAAACATTTGATAATTTTTGTTC
TCAGGGTGAGGGTTTTGCTGCGTTTTAATAAAGAGGTGTGCATTTCTTTT
GAACGAGAATCTCTTAGTTCAATTTATCTCTGTGTTCACCATGCTTAACT
ATTTCATAGATTACAAACATTGGTCACATCATAAGTGAAACAAGAGAAAG
AGGATTCCAAGTATTAGCTGGAGGGGCCAGTTTCTTGATGGCATCTATGA
ATCTAGGTTAGAAATTTTACATTTAAAATTTTGAATATTTTGAATATTTT
GAATTTAAAGACTTTATTTTTACGTAAGTGCTCCCGTTTCACAGCAGACA
CATATTTCATATCAGGACGGTGTCTCCCTATTGTTATATTGTGCTGAATA
AACAAAACATTGTTATTCTTTTCCTCTTTCTGCACAATCTTGCTCCATAC
CAATGTCAATTCCATGTGAAAAAGCTTGTAAATTAAAATTGATGAGTAAG
CAACCTCTATTACTCTTATTTGAAAACAAAACCTTTAATGAGAATTTAAC
TTTACTTTACTTGTCACGAGCTCGTAAATTTCGCGTAAGAAACGTTCATT
CAATCAGATTTAATCAATGTTCCGTCTCTGACGGATTTTCTTCCCCACGA
AGTATGAATCTGTAATTTCAAAGCCAGTTTGACAAGAGGGATTATTTTTG
TCCACTGATAAATAATCAGTCCTCTATCGTCTTATTACGCTTTTTTTCGT
ATAAAAATTCCAAATAATTTTGCTATAATCTTTTCCAGGAGCTGTCGGTG
GTATCTGTGCGTTAGCCAATATTCTCGGACAAGAATGTTGTGATTTGGCT
ACGTTGTGCAAAGAAGGTCGTTTAGATGAAGCAAGGGAACTCCAACTGAA
ATTGATCGCCCCCAATCAAGCAGTAAGAAACCCTTTCTAAATAGGATTAG
CTATTATATGATATATCGGGGTTATTACAAACATTCAAGAGGACGAGATT
TAAGAATGGAATCTAATATCAAATTATGTTTGCTTGCTAATTTTTAACTG
CAAAAAGATAGATATTTTGATTAAATTCGAATTTAAGTGTTAAGTCCTTG
AAATATAATACCCATATCGCTTACTGAATCTTTATATTTTCAAATCGCAC
TGAAATACATTCTAAATGTTAATCTCCTGGCGTTATCTTACATCTTAGTT
AAAAAGTTTCATCGTCATTGCGTTAAAAGCTGTTTTTTACTTTACAACTC
ACTTTTGAAAGTACCCGTTTCATCCAGTATTGAATTCAAGTCCAAAGAAA
AAATTGCGAGTTTGAGCGGAATTCGCTTTTCCTTTTTCGTTTTCTTGATT
TATACAGATGGTTAAAAAAACCTATTCAACATGTACATTTGATTTTATTT
ACCAGATAAAGAAAAGCCCGTCTACCATCATTAGCTTCTTTATGAAAGTC
TTACACGATTTCTTTTATAAGAAAAATCGTGTAAATCCATTTCATCATGG
ATATTCTTAACTTTTTGGTCGAAAATGTAATATTCTTAACATATTCTTAA
GGTTAATTTTTAGATTTTACTATTCATAGTTTCAAAATCATCGAAAAGTA
ATATAAAAACAGAATACTTTTTTATGTGTATGCATAAAAAACAACAAAAT
AAAAACAATGTATTACGATATTTTTTAACATATTCTTAATTTTTTGGCCA
TTTTCATCATGGACATTCTTATTTTTATAAAAAAACATGTATTTTTATCT
TAGGTTACTCGAAAATACAATGTACCAGCTTTGAAATACGCAATGGACTT
ATGTGGTTATTACGGTGGCCCATCACGGTCGCCACTTGGTCCACTCAATG
AACTAGAAATGAAGGATGTCAAGAATTGTTTCAAGGAATATTGCTAAAAG
ATAGGAATATAACATGTCGCAATAAATGCATTTAAAAAACCAAGCTCCTT
GCTTTGAACTAACAAAATCAATCTTCATTACACCCAAAAGCTACGAAAGA
TGTTTAACTAGCATATGGTCCTTTTGAGAAAACGTCAAATACGATTGATG
CTTCTATGCCA

Coding sequence (CDS) from alignment at scaffold_166:505530..511090-

>TCONS_00049812 ID=TCONS_00049812|Name=TCONS_00049812|organism=Clytia hemisphaerica|type=CDS|length=7056bp|location=Sequence derived from alignment at scaffold_166:505530..511090- (Clytia hemisphaerica)
GTTACTCGAAAATACAATGTACCAGCTTTGAAATACGCAATGGACTTATG
TGGTTATTACGGTGGCCCATCACGGTCGCCACTTGGTCCACTCAATGAAC
TAGAAATGAAGGATGTCAAGAATTGTTTCAAGGAATATTGCTAAGAGCTG
TCGGTGGTATCTGTGCGTTAGCCAATATTCTCGGACAAGAATGTTGTGAT
TTGGCTACGTTGTGCAAAGAAGGTCGTTTAGATGAAGCAAGGGAACTCCA
ACTGAAATTGATCGCCCCCAATCAAGCAATTACAAACATTGGTCACATCA
TAAGTGAAACAAGAGAAAGAGGATTCCAAGTATTAGCTGGAGGGGCCAGT
TTCTTGATGGCATCTATGAATCTAGGTTGCAGATGCTTCAAGTATTCCCG
TCATTTTGTACAACGTTCCTTCAAATACTGGTTTTGAATTTCCAGTAGAT
GCCATCATAAAACTTTCCGAACATCCTAATATCATTGGTTTCAAAGATAG
TGGTGGAAACGTACAAAGGAGACTATTGAGCTCACAAATGAAATGGCAAA
AAAAGGAGCTCATGCAGCCTTGGTTGTTACCCCTGCTTTCTTCAAAAACC
GAATGAATTCTGCTGCAATGATCAACCACTACACACAGGATATGTTGTAC
AAGGTTCCAATGGAGAATATGTCTCCCTTTCTACAGAAGAAAAAATTGAC
ATGGTCCAATTTGTAGCTGAAAATGTTGAAAGCAATAAAACCATCCTTGT
TGGGTCTGGTTGTGAAGATGGCAGGAGTGACAACTTTTTTCTCTCGCAAG
TTGATTGATGGGAAACATCTCTCAAAATTTTCAAAAAGTGTCAGATTGCT
TTTGCATGATGGAAAGGTAGCCTCTCGTTCAATGAGCACAGACTTGGATC
TATCTGGAATTTACCCACCAATTCCAACACCTTTCAAAGCTAATGAGGAT
GTTGATTGGCATTCTTTAAAGTCTAACTTGGACAAATGGAGTGCTGTCCC
ATTTAAAGGTTACTCGAAAATACAATGTACCAGCTTTGAAATACGCAATG
GACTTATGTGGTTATTACGGTGGCCCATCACGGTCGCCACTTGGTCCACT
CAATGAACTAGAAATGAAGGATGTCAAGAATTGTTTCAAGGAATATTGCT
AAGAGCTGTCGGTGGTATCTGTGCGTTAGCCAATATTCTCGGACAAGAAT
GTTGTGATTTGGCTACGTTGTGCAAAGAAGGTCGTTTAGATGAAGCAAGG
GAACTCCAACTGAAATTGATCGCCCCCAATCAAGCAATTACAAACATTGG
TCACATCATAAGTGAAACAAGAGAAAGAGGATTCCAAGTATTAGCTGGAG
GGGCCAGTTTCTTGATGGCATCTATGAATCTAGGTTGCAGATGCTTCAAG
TATTCCCGTCATTTTGTACAACGTTCCTTCAAATACTGGTTTTGAATTTC
CAGTAGATGCCATCATAAAACTTTCCGAACATCCTAATATCATTGGTTTC
AAAGATAGTGGTGGAAACGTACAAAGGAGACTATTGAGCTCACAAATGAA
ATGGCAAAAAAAGGAGCTCATGCAGCCTTGGTTGTTACCCCTGCTTTCTT
CAAAAACCGAATGAATTCTGCTGCAATGATCAACCACTACACACAGGATA
TGTTGTACAAGGTTCCAATGGAGAATATGTCTCCCTTTCTACAGAAGAAA
AAATTGACATGGTCCAATTTGTAGCTGAAAATGTTGAAAGCAATAAAACC
ATCCTTGTTGGGTCTGGTTGTGAAGATGGCAGGAGTGACAACTTTTTTCT
CTCGCAAGTTGATTGATGGGAAACATCTCTCAAAATTTTCAAAAAGTGTC
AGATTGCTTTTGCATGATGGAAAGGTAGCCTCTCGTTCAATGAGCACAGA
CTTGGATCTATCTGGAATTTACCCACCAATTCCAACACCTTTCAAAGCTA
ATGAGGATGTTGATTGGCATTCTTTAAAGTCTAACTTGGACAAATGGAGT
GCTGTCCCATTTAAAGGTTACTCGAAAATACAATGTACCAGCTTTGAAAT
ACGCAATGGACTTATGTGGTTATTACGGTGGCCCATCACGGTCGCCACTT
GGTCCACTCAATGAACTAGAAATGAAGGATGTCAAGAATTGTTTCAAGGA
ATATTGCTAAGAGCTGTCGGTGGTATCTGTGCGTTAGCCAATATTCTCGG
ACAAGAATGTTGTGATTTGGCTACGTTGTGCAAAGAAGGTCGTTTAGATG
AAGCAAGGGAACTCCAACTGAAATTGATCGCCCCCAATCAAGCAATTACA
AACATTGGTCACATCATAAGTGAAACAAGAGAAAGAGGATTCCAAGTATT
AGCTGGAGGGGCCAGTTTCTTGATGGCATCTATGAATCTAGGTTGCAGAT
GCTTCAAGTATTCCCGTCATTTTGTACAACGTTCCTTCAAATACTGGTTT
TGAATTTCCAGTAGATGCCATCATAAAACTTTCCGAACATCCTAATATCA
TTGGTTTCAAAGATAGTGGTGGAAACGTACAAAGGAGACTATTGAGCTCA
CAAATGAAATGGCAAAAAAAGGAGCTCATGCAGCCTTGGTTGTTACCCCT
GCTTTCTTCAAAAACCGAATGAATTCTGCTGCAATGATCAACCACTACAC
ACAGGATATGTTGTACAAGGTTCCAATGGAGAATATGTCTCCCTTTCTAC
AGAAGAAAAAATTGACATGGTCCAATTTGTAGCTGAAAATGTTGAAAGCA
ATAAAACCATCCTTGTTGGGTCTGGTTGTGAAGATGGCAGGAGTGACAAC
TTTTTTCTCTCGCAAGTTGATTGATGGGAAACATCTCTCAAAATTTTCAA
AAAGTGTCAGATTGCTTTTGCATGATGGAAAGGTAGCCTCTCGTTCAATG
AGCACAGACTTGGATCTATCTGGAATTTACCCACCAATTCCAACACCTTT
CAAAGCTAATGAGGATGTTGATTGGCATTCTTTAAAGTCTAACTTGGACA
AATGGAGTGCTGTCCCATTTAAAGGTTACTCGAAAATACAATGTACCAGC
TTTGAAATACGCAATGGACTTATGTGGTTATTACGGTGGCCCATCACGGT
CGCCACTTGGTCCACTCAATGAACTAGAAATGAAGGATGTCAAGAATTGT
TTCAAGGAATATTGCTAAGAGCTGTCGGTGGTATCTGTGCGTTAGCCAAT
ATTCTCGGACAAGAATGTTGTGATTTGGCTACGTTGTGCAAAGAAGGTCG
TTTAGATGAAGCAAGGGAACTCCAACTGAAATTGATCGCCCCCAATCAAG
CAATTACAAACATTGGTCACATCATAAGTGAAACAAGAGAAAGAGGATTC
CAAGTATTAGCTGGAGGGGCCAGTTTCTTGATGGCATCTATGAATCTAGG
TTGCAGATGCTTCAAGTATTCCCGTCATTTTGTACAACGTTCCTTCAAAT
ACTGGTTTTGAATTTCCAGTAGATGCCATCATAAAACTTTCCGAACATCC
TAATATCATTGGTTTCAAAGATAGTGGTGGAAACGTACAAAGGAGACTAT
TGAGCTCACAAATGAAATGGCAAAAAAAGGAGCTCATGCAGCCTTGGTTG
TTACCCCTGCTTTCTTCAAAAACCGAATGAATTCTGCTGCAATGATCAAC
CACTACACACAGGATATGTTGTACAAGGTTCCAATGGAGAATATGTCTCC
CTTTCTACAGAAGAAAAAATTGACATGGTCCAATTTGTAGCTGAAAATGT
TGAAAGCAATAAAACCATCCTTGTTGGGTCTGGTTGTGAAGATGGCAGGA
GTGACAACTTTTTTCTCTCGCAAGTTGATTGATGGGAAACATCTCTCAAA
ATTTTCAAAAAGTGTCAGATTGCTTTTGCATGATGGAAAGGTAGCCTCTC
GTTCAATGAGCACAGACTTGGATCTATCTGGAATTTACCCACCAATTCCA
ACACCTTTCAAAGCTAATGAGGATGTTGATTGGCATTCTTTAAAGTCTAA
CTTGGACAAATGGAGTGCTGTCCCATTTAAAGGTTACTCGAAAATACAAT
GTACCAGCTTTGAAATACGCAATGGACTTATGTGGTTATTACGGTGGCCC
ATCACGGTCGCCACTTGGTCCACTCAATGAACTAGAAATGAAGGATGTCA
AGAATTGTTTCAAGGAATATTGCTAAGAGCTGTCGGTGGTATCTGTGCGT
TAGCCAATATTCTCGGACAAGAATGTTGTGATTTGGCTACGTTGTGCAAA
GAAGGTCGTTTAGATGAAGCAAGGGAACTCCAACTGAAATTGATCGCCCC
CAATCAAGCAATTACAAACATTGGTCACATCATAAGTGAAACAAGAGAAA
GAGGATTCCAAGTATTAGCTGGAGGGGCCAGTTTCTTGATGGCATCTATG
AATCTAGGTTGCAGATGCTTCAAGTATTCCCGTCATTTTGTACAACGTTC
CTTCAAATACTGGTTTTGAATTTCCAGTAGATGCCATCATAAAACTTTCC
GAACATCCTAATATCATTGGTTTCAAAGATAGTGGTGGAAACGTACAAAG
GAGACTATTGAGCTCACAAATGAAATGGCAAAAAAAGGAGCTCATGCAGC
CTTGGTTGTTACCCCTGCTTTCTTCAAAAACCGAATGAATTCTGCTGCAA
TGATCAACCACTACACACAGGATATGTTGTACAAGGTTCCAATGGAGAAT
ATGTCTCCCTTTCTACAGAAGAAAAAATTGACATGGTCCAATTTGTAGCT
GAAAATGTTGAAAGCAATAAAACCATCCTTGTTGGGTCTGGTTGTGAAGA
TGGCAGGAGTGACAACTTTTTTCTCTCGCAAGTTGATTGATGGGAAACAT
CTCTCAAAATTTTCAAAAAGTGTCAGATTGCTTTTGCATGATGGAAAGGT
AGCCTCTCGTTCAATGAGCACAGACTTGGATCTATCTGGAATTTACCCAC
CAATTCCAACACCTTTCAAAGCTAATGAGGATGTTGATTGGCATTCTTTA
AAGTCTAACTTGGACAAATGGAGTGCTGTCCCATTTAAAGGTTACTCGAA
AATACAATGTACCAGCTTTGAAATACGCAATGGACTTATGTGGTTATTAC
GGTGGCCCATCACGGTCGCCACTTGGTCCACTCAATGAACTAGAAATGAA
GGATGTCAAGAATTGTTTCAAGGAATATTGCTAAGAGCTGTCGGTGGTAT
CTGTGCGTTAGCCAATATTCTCGGACAAGAATGTTGTGATTTGGCTACGT
TGTGCAAAGAAGGTCGTTTAGATGAAGCAAGGGAACTCCAACTGAAATTG
ATCGCCCCCAATCAAGCAATTACAAACATTGGTCACATCATAAGTGAAAC
AAGAGAAAGAGGATTCCAAGTATTAGCTGGAGGGGCCAGTTTCTTGATGG
CATCTATGAATCTAGGTTGCAGATGCTTCAAGTATTCCCGTCATTTTGTA
CAACGTTCCTTCAAATACTGGTTTTGAATTTCCAGTAGATGCCATCATAA
AACTTTCCGAACATCCTAATATCATTGGTTTCAAAGATAGTGGTGGAAAC
GTACAAAGGAGACTATTGAGCTCACAAATGAAATGGCAAAAAAAGGAGCT
CATGCAGCCTTGGTTGTTACCCCTGCTTTCTTCAAAAACCGAATGAATTC
TGCTGCAATGATCAACCACTACACACAGGATATGTTGTACAAGGTTCCAA
TGGAGAATATGTCTCCCTTTCTACAGAAGAAAAAATTGACATGGTCCAAT
TTGTAGCTGAAAATGTTGAAAGCAATAAAACCATCCTTGTTGGGTCTGGT
TGTGAAGATGGCAGGAGTGACAACTTTTTTCTCTCGCAAGTTGATTGATG
GGAAACATCTCTCAAAATTTTCAAAAAGTGTCAGATTGCTTTTGCATGAT
GGAAAGGTAGCCTCTCGTTCAATGAGCACAGACTTGGATCTATCTGGAAT
TTACCCACCAATTCCAACACCTTTCAAAGCTAATGAGGATGTTGATTGGC
ATTCTTTAAAGTCTAACTTGGACAAATGGAGTGCTGTCCCATTTAAAGGT
TACTCGAAAATACAATGTACCAGCTTTGAAATACGCAATGGACTTATGTG
GTTATTACGGTGGCCCATCACGGTCGCCACTTGGTCCACTCAATGAACTA
GAAATGAAGGATGTCAAGAATTGTTTCAAGGAATATTGCTAAGAGCTGTC
GGTGGTATCTGTGCGTTAGCCAATATTCTCGGACAAGAATGTTGTGATTT
GGCTACGTTGTGCAAAGAAGGTCGTTTAGATGAAGCAAGGGAACTCCAAC
TGAAATTGATCGCCCCCAATCAAGCAATTACAAACATTGGTCACATCATA
AGTGAAACAAGAGAAAGAGGATTCCAAGTATTAGCTGGAGGGGCCAGTTT
CTTGATGGCATCTATGAATCTAGGTTGCAGATGCTTCAAGTATTCCCGTC
ATTTTGTACAACGTTCCTTCAAATACTGGTTTTGAATTTCCAGTAGATGC
CATCATAAAACTTTCCGAACATCCTAATATCATTGGTTTCAAAGATAGTG
GTGGAAACGTACAAAGGAGACTATTGAGCTCACAAATGAAATGGCAAAAA
AAGGAGCTCATGCAGCCTTGGTTGTTACCCCTGCTTTCTTCAAAAACCGA
ATGAATTCTGCTGCAATGATCAACCACTACACACAGGATATGTTGTACAA
GGTTCCAATGGAGAATATGTCTCCCTTTCTACAGAAGAAAAAATTGACAT
GGTCCAATTTGTAGCTGAAAATGTTGAAAGCAATAAAACCATCCTTGTTG
GGTCTGGTTGTGAAGATGGCAGGAGTGACAACTTTTTTCTCTCGCAAGTT
GATTGATGGGAAACATCTCTCAAAATTTTCAAAAAGTGTCAGATTGCTTT
TGCATGATGGAAAGGTAGCCTCTCGTTCAATGAGCACAGACTTGGATCTA
TCTGGAATTTACCCACCAATTCCAACACCTTTCAAAGCTAATGAGGATGT
TGATTGGCATTCTTTAAAGTCTAACTTGGACAAATGGAGTGCTGTCCCAT
TTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031575XLOC_031575Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049812-proteinTCONS_00049812-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049812-exon-scaffold_166-1575043694:510716..511090TCONS_00049812-exon-scaffold_166-1575043694:510716..511090Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1575043694:509274..509402TCONS_00049812-exon-scaffold_166-1575043694:509274..509402Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1575043694:508339..508466TCONS_00049812-exon-scaffold_166-1575043694:508339..508466Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1575043694:507870..508004TCONS_00049812-exon-scaffold_166-1575043694:507870..508004Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1575043694:507335..507431TCONS_00049812-exon-scaffold_166-1575043694:507335..507431Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1575043694:506669..506802TCONS_00049812-exon-scaffold_166-1575043694:506669..506802Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1575043694:505530..505837TCONS_00049812-exon-scaffold_166-1575043694:505530..505837Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1510915933:510716..511090TCONS_00049812-exon-scaffold_166-1510915933:510716..511090Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1510915933:509274..509402TCONS_00049812-exon-scaffold_166-1510915933:509274..509402Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1510915933:508339..508466TCONS_00049812-exon-scaffold_166-1510915933:508339..508466Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1510915933:507870..508004TCONS_00049812-exon-scaffold_166-1510915933:507870..508004Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1510915933:507335..507431TCONS_00049812-exon-scaffold_166-1510915933:507335..507431Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1510915933:506669..506802TCONS_00049812-exon-scaffold_166-1510915933:506669..506802Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1510915933:505530..505837TCONS_00049812-exon-scaffold_166-1510915933:505530..505837Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1491911889:510716..511090TCONS_00049812-exon-scaffold_166-1491911889:510716..511090Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1491911889:509274..509402TCONS_00049812-exon-scaffold_166-1491911889:509274..509402Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1491911889:508339..508466TCONS_00049812-exon-scaffold_166-1491911889:508339..508466Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1491911889:507870..508004TCONS_00049812-exon-scaffold_166-1491911889:507870..508004Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1491911889:507335..507431TCONS_00049812-exon-scaffold_166-1491911889:507335..507431Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1491911889:506669..506802TCONS_00049812-exon-scaffold_166-1491911889:506669..506802Clytia hemisphaericaexon
TCONS_00049812-exon-scaffold_166-1491911889:505530..505837TCONS_00049812-exon-scaffold_166-1491911889:505530..505837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:505530..511090 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.5626	5.45595	4.13781	3.79743	54.2113	43.7001	35.2591	34.9943	23.7645	24.1701	20.5112	17.0587	22.8208	21.734	31.2006	41.3266	37.0483	33.5439	14.5766	15.901	22.4197	23.8844	25.2523	27.8126	23.7504	24.2026	16.8513	9.70198	14.5018	13.8242
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002220DapA-like
IPR013785Aldolase_TIM
IPR020625Schiff_base-form_aldolases_AS
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016829lyase activity
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016829 lyase activity
Blast
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BLAST of TCONS_00049812 vs. Swiss-Prot (Human)
Match: HOGA1 (4-hydroxy-2-oxoglutarate aldolase, mitochondrial OS=Homo sapiens GN=HOGA1 PE=1 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 6.407e-115
Identity = 155/289 (53.63%), Postives = 218/289 (75.43%), Query Frame = 3 
Query:  261 LDLSGIYPPIPTPFKANEDVDWHSLKSNLDKWSAVPFKGYVVQGSNGEYVSLSTEEKIDMVQFVAENVESNKTILVGSGCEGTKETIELTNEMAKKGAHAALVVTPAFFKNRMNSAAMINHYTQVADASSIPVILYNVPSNTGFEFPVDAIIKLSEHPNIIGFKDSGGNITNIGHIISETRERGFQVLAGGASFLMASMNLGAVGGICALANILGQECCDLATLCKEGRLDEARELQLKLIAPNQAVTRKYNVPALKYAMDLCGYYGGPSRSPLGPLNELEMKDVKNCF 1127
            +D++GIYPP+ TPF A  +VD+  L+ NL K    PF+G+VVQGSNGE+  L++ E++++V  V + +  N+ +L GSGCE T+ T+E+T  MA+ GA AA+VVTP +++ RM+SAA+I+HYT+VAD S IPV+LY+VP+NTG + PVDA++ LS+HPNI+G KDSGG++T IG I+ +TR++ FQVLAG A FLMAS  LGAVGG+CALAN+LG + C L  LC  G+ ++A++LQ +LI PN AVTR++ +P LK  MD  GYYGGP R+PL  L+  E + ++  F
Sbjct:   33 VDIAGIYPPVTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMKDSGGDVTRIGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRFGIPGLKKIMDWFGYYGGPCRAPLQELSPAEEEALRMDF 321
The following BLAST results are available for this feature:
BLAST of TCONS_00049812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HOGA16.407e-11553.634-hydroxy-2-oxoglutarate aldolase, mitochondrial O... [more]
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