TCONS_00049791 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049791
Unique Name	TCONS_00049791
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3990

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_166:531432..546068+

transcript sequence

>TCONS_00049791 ID=TCONS_00049791|Name=TCONS_00049791|organism=Clytia hemisphaerica|type=transcript|length=3990bp
gaaaaaaagaaacaaacaacaaaaacatgGGTACTGGATGAGGTGTAATG
TGAATatttaaaataaacaaatcaCAAACTCCAAAAATGTCATCTTTTTG
GAGTAAGCTGTTTAAGCCAGCTGCAAAGAATAAGGTTTATAAGTACCTTA
CAAAAGGGGTCGATCCGAATGAAATATGGGAAATCTGTGGTGAACTCGGA
GATGGAACTTTTGGCAAAGTATACAAGGCCAAGCGGAAGAGCGATGGGGC
ACTGACAGCTGCAAAGATTGTGGACATAAAGAATGAACAGGATCTTGATG
ACTTTATGGTGGAGATTGACATCTTAGCAGAATGCAAACATAAATATGTT
GTCAATCTATTTGAAACGTATTACTTTGAGGACAAGCTATGGATGATGTT
AGAATTCTGTCCAGGAGGTGCAATGGATGATATTATTTTAGatcTTGAAA
GAGGTTTGGATGAAACTACAATTAAAAGTCTTTGTCGACAAATGGTTGAG
GGTTTGGCGTTTCTTCATTCATGTGGAGTCATTCACCGTGATTTGAAAGC
TGGCAATGTCCTTTTAACTGAAACTGGTGATATCAAACTTGCTGATTTTG
GAGTATCTGCCAAATGTAAGACTGCTCAAGGAAGAAGAAACACCTTTATT
GGAACACCTTACTGGATGGCACCTGAAGTTGTTGTCACAGAAACGATGCA
TGATGAAACGTATGATAATAAGGCTGATGTATGGAGTTTAGGGATCACGC
TGATTGAATTTGCAGAGATGCAACCACCGAGCCATGAAATGCATCCCATG
AGAGTACTAATGAGAATCACAAAATCGGATCCACCTACACTTCAACACCG
CAAAAAATGGTCAGCGGATTTCCACAATTTTCTTGCGGTTTGTGTGAATA
AAGATCCGAACCAAAGACCAAGTATGGAAGAACTTCTTGAACATCCCTTC
ATACGAGACGTCAAAGACACACAGCCAGTGATCGATTTGTATCGCGAAGC
TAAAGCTGAGGTTGTTGAAACGCTGGATGACTTGCCAGAAGATTCTGATG
GCAGCTTCGTTGAAATTTCGACTCCCAAATTGGAAAAATCTACTTCAAGC
CACACACTTGACAGCTGTAGTATAATATCTGAAGAAAGCGATTCAAGTCC
CAAAGATTCTTCGACATCTACGGGTAGTGCTATTCCGCCTATGCCCATCA
GAAAGATGAAAGATCTCACTGGAGACACTAACTTAAACGAAGATAAAGAC
AAATTCCCTAAAAGTGAAGTCAAGAAAGACATTCCCAAACAACCGCAGAG
TCCTGAATTAACAGGCTTCAAAGAAACAGGAGACAAGGCACCGCAGAGTC
CTTCAGAGCAAACTCTCACAAAAGAAGAACTCAAAAATCGTGAATTGGAG
AAAGTTCAAAAGGAATACGCTGAGAAACAGAAACATGAAAAAGAGAAGGG
TGGAACGCCTTCCGAAACGCCCCACCCGCCAGCCACGCCCACGGAAACAG
ACTCAGCTTCGATCGCAAGTAGTGCATCATCAAGGAAATCCTTAGGTGAA
GAAAAGAAGCCTTCTGATAAGCTAGCTGGACTAGCCTCGTTGACAGCTGA
CTTGAAAGCAGTTGAAGGAGAGGCTAAAGCACAAATGAAGGTTCCGGTTG
AGGGCGACAAAGGTAACAAACAGTATAAAACGTTGACTCGCGTTCGACAG
TACGAAAAAGACGGTAAAATGGTTACCGAAACTGTCCAACGTATTGTGGA
TGTGTCGAGTGAAGATTTCCGCGCGGCCGCTAAGAAGGAACAACAATTAA
GAAAATTGGCATTACAAGAGATGAAAGCTTTACGTCGCGAAGAGCAGAAA
CAAGGAGCTGAATTAATGGCCAGGATACGTTTACAGTGGGATCAAATCga
cgaaagGTTCCACACTGAGGAAGACGAATGCAAGAAAAAGTATGAAGCGG
ATATCGAGAACATGAGTCGTCAACAGAAACGAGAAATGGAAAAACTAGAA
CTCAACCAAAATAATCAACTGAAACAAGACTTAAAACATTTGAAGATTGA
TCAGgaGAAACAATTGAAGACATTCCGTGAAATGTTGAAACAAGATCAAA
AACGCTTGAAGAAGGAGATTGAAAAacttcccaaagcaaccaagaAAGAA
GAGATGAGGGTCCGCAAAGAAAAACTCGACCTTCATCAACAGAATCAAGA
GCGACAATTCTTGGCGAAACAAGGTCAAGAGAATGTCGATTTTCATCGAG
CAAAAGTTGAAGAACACCGAAAGATCATTTTCAACAAGGAAATGGAATTC
CTCAATAAGAAACATAATTTGATTCGAGCCTGGAAATCGGACGAATGGGA
AATGGAACAAACTCGTATTTACAACAAACATAATTTAACGAAGAAACAAC
TCAAAGAGACCTTTTTCTTACAACGATCACAGATGGCCAATAGACATTCT
AAGGAACTGGACCAACACACGCGTCTATATCGTACGAAAGAAGACGATTT
ACGTCATCGACAAGATCTAGAACGTAAACGTCTTCCCAAGATACAACGTA
ACGAGTTACGTACTCGCGTACAGGCGAAACGTAAACAGTTACGCGGTGAA
CGCAATAAACGTGAATCGATTGTTGGTGGTGGGTTAAACGCTTCTGAAAA
AGATAAACTACGAGAgTACGAAGACAAAGTGCGAAAACAACAAGCGGAAG
ACACGAACCGAATGATTGGCCGTCATCAACAAGAAGAGAATGACCTTCGA
CAAAGCGCTGATAACGAACTCAACGAGCTGAAACAGTTGCAGAACGAGAA
ACGACACATGTTGGTTCAAAGTGAAAGTGAGAAATTGAAAGAACGTGAAG
TCAAACACTCAACCGAACTCAACGAATGGAAAGAAAGTCTGGCTCCAAGA
AAAAGGACActcgaagcagaatttttccgGCAAAAAGAAGAGCAACGTGA
ATTTTACTGTCAGACAAGCACTGACGTGTACGTAGCGGACGGACAAAGTG
GTCAGAACGGTGTACGTAGTACGCCGGCAGCGCAACGACAAGCATCTCAG
ACACCGTCTTCGCCTGACGTTCAAGGTGCTGGAATCTATTGAGTGGTATT
GAATTTCCTTTAGAGAGTATTATGCTGAGGAATCTCATATGATTTCACGG
GTGAAGTTTGTATGAGTAATCACACATACTTCGAGTGACCGCTCTTCCAC
TCTTTGTAGATGCCTTTGATTTCGATGTTCAGTTCATAGCAAATCATGAT
GTTGAGGACTAACGCGAAAAGAGGAGAATGATTCAGCACCATTGCGCTAT
TCCATAAAAGATCCCCCTCGCATGTTAAGCAAGCTATTTCGGAAGTGTGG
AAGTCTTCCCTGTTGATACCAACTGTAATCTTAGAGATCCCCTTAACATT
TAGTCAATTATTTTTGTTAGTCTTTCAGAGCCCTCTCGTGGGTTTTTAGA
TTATTTTGAGACCACTTTTTGCACGGAAAAAGGAGCTCTTCAACgcagag
ggggggggggtgaaggaTCTTTTTATGGATTAGCTCATTTGAGTTGGTGT
TTTATCTATCACCCTTGGTTACGGACACTTATTGAAACTAGAACATTGGT
ATATCAATGTATTGTGTCTCCTGTAGGTTCTCATTTGGTTGGTTGTGTAT
GTTTTTGTTCAATTCTGTTTTGTCTATTATTACATTATAAAAATTATTAC
Aatttattactttttacaatttcaatacttataagaaaatcaaaaatttt
atattttatgaaaatggTAACGAATTTGGGAGAAAAAAATTGGGAGGGGG
GCTTTTCTGTATGTTTGGTTACTAAtgctaaattttccaatttGGGGGAC
TTTCGGAATATTTCAACACAACTGGTGGTGGGTAGGAccagggctagagt
agaatctctaacctttctcaggtaagaaaaagtgaagccttaaaaaatgc
gccgtatttttgacgacagattgaatctagcaattccttN

Run BLAST on NCBI

transcript from alignment at scaffold_166:531432..546068+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049791 ID=TCONS_00049791|Name=TCONS_00049791|organism=Clytia hemisphaerica|type=transcript|length=14637bp|location=Sequence derived from alignment at scaffold_166:531432..546068+ (Clytia hemisphaerica)
gaaaaaaagaaacaaacaacaaaaacatgGGTACTGGATGAGGTGTAATG
TGAATatttaaaataaacaaatcaCAAACTCCAAAAATGTCATCTTTTTG
GAGTAAGCTGTTTAAGCCAGCTGCAAAGAATAAGGTTTATAAGTACCTTA
CAAAAGGGGTCGATCCGAATGAAATATGGGAAATCTGTGGTGAACTCGGA
GATGGAACTTTTGGCAAAGTATACAAGgtaaaaatattcttgaatttctt
ttgttttaatttttaaaactagTGTATATGAGAAGTTACTATTACAGGTT
TCTATCATTATATCGAGTGTTTTAACTGTTTTTGTGAGctcttaaattga
aaaaaaaaacatctaaagACCTATCGTAAAGCTTATATCATCGCATGAGA
AATAAAGAGACTTGTctcctatttttcgaaaaatgagaCAATGATTGATC
CATATTCTTCAGAAAAAATTCTTGGAGTTAAACGGACCTAAATCCATGAG
GTTTGACTTTTTGGCCTTAAATTTGGATATTATCTCTATTTTTTAATGGA
TTGCAGAtttgaacaaattatataaaagaCAGCCCTAAATACAAAGTAAA
AAGActtaaatccattttttataTGTAAAGTAATAGGTaacaaaattaac
aattttGAGAAGTAAAAAGATTTATATCCATTTTCTGGAGATAAAGtctt
tttatttctaaatttttaaatgCTAATTATctcaaaacaaggaaaatggA
GACAAGTCTCTTTATTTCTCATGCAACGATATACACAAAAAGTAATTGTA
TTTATTTGGAGGCTTTAACTGATTATGATCATTTTTATaatgtttaaaaa
agttagagaatgataaagaagtaatgtTAACAAGAATTAATACTTTAAAC
AGATGATCACAAATTTTACCTTCTTCTAGGCCAAGCGGAAGAGCGATGGG
GCACTGACAGCTGCAAAGATTGTGGACATAAAGAATGAACAGGATCTTGA
TGACTTTATGGTGGAGATTGACATCTTAGCAGAATGCAAACATAAATATG
TTGTCAATCTATTTGAAACGTATTACTTTGAGGACAAGCTATGGGTGggt
gtttatattttttaagtctTTGTATGGAAATTTTGTTACATAAGATATGT
AAgatgttttttatcaaattagtttttagtattgatttgatattgaaaaa
aatatctatGAATTTACCCTTTTTATGTTccaatgtccctttaaaattaA
TGACACCATTTCAATAAGTATTTTTGATCTTCCTCAGATGATGTTAGAAT
TCTGTCCAGGAGGTGCAATGGATGATATTATTTTAGGTGAGTTCAATAGA
ATGTCCTGATTTTTTAATGTTTGGTGAGAAAATCTTGTAGTGAAAATCTA
GTCATCTGAGTCACTCTGACTCGAtcccattttcatttttttcttcttct
ttgtccTCTTTGTCATTTCTTTTTACCTTTTAAAACTCTTATTTTTGTAC
CTGGTGCATTTTAcgtttcaattttgaaaatgggaatgaataaatattta
ttttagatcTTGAAAGAGGTTTGGATGAAACTACAATTAAAAGTCTTTGT
CGACAAATGGTTGAGGTAAGTGCTATGTTCACATTCTTTGGGAATTGTTA
TTAAGGGTTATTGTTATGCTGCTTGatcctaaatttcttttttattatga
tTAGTGTCACACTTTTGAAAAGCACTTTGTaagttaaatattttcagaaa
GCTAACCCTAAGTTCCCCAAAACCAAAGCcaaatctttttctttgttcag
TCCACACCTTATGTATCATGGGGGgagtactaaaatctcagacatcatga
tGTTAAGTGGTGTGCTGGTTTGCCATTGGGtactaaaatacaaaaatata
tagGTATACAGGGAAATTCTTTTAGTACATTGATACATTGATAATAATAT
GTGACCATCCAAGCGATTCAAAGGACATGAAATTCTTGCGATACTTACTG
TAATTGATGGATTGCCAGACTCAACAAGAGTGTTAGCAGCAAGATGCCGA
TAGTTTTGCCGGTATCAAGCTGGAAGATTTTTAtgtacttaaaatcgctt
gcAGATTCgcatattatattttttttcgctttgaggtatgtaaaaaaaaa
aagtctttttttagtACTGACTCCTATGTTTGTACATTGAAGATAAATTC
TGTCTACTGTCTAGTATACAGTATATAATGATACTTTCTGTTAACTCTAG
GGTTTGGCGTTTCTTCATTCATGTGGAGTCATTCACCGTGATTTGAAAGC
TGGCAATGTCCTTTTAACTGAAACTGGTGATATCAAACTTGGTAAGGTGT
AGAATCAACTTCTAAAGAGTTTTGTAACAAAATAGGTAAAAGGTAGCCAT
TCAGTAATTTCAGTTATCTTTTTAGTTAATTTTTTCAAGACAGTATTCCC
TTCTGTATTTGACAAATTAATTCTGTTTATAAACATTCCAATTAGCTAGA
AAGTAAAGACAATTTTCTTCACATTTTTCAGCTGATTTTGGAGTATCTGC
CAAATGTAAGACTGCTCAAGGAAGAAGAAACACCTTTATTGGAACACCTT
ACTGGTAACTTATATTTGTTTAACATTGACTtcagattttattttttatg
agatagtcAGGTTACGTATGCTTACAAAGCAGAATATTGATAAAGGCTTC
CTCAAAATTTGTGATCGTTCGGCGCGGGGAGGACGTTCTTTcttcaaaaa
agtttaacgtgTACTGAATTTTTCTacaagaatttttaaatttttgattc
tAGCTTTTTAATAATAACCGTTTGGAAATTGCTAATCATTTTTAAGTGCA
CCATTTCTTCGATTTATTTTGACTATTTTACTGTATTTTGCTGTGTAGGA
TGGCACCTGAAGTTGTTGTCACAGAAACGATGCATGATGAAACGTATGAT
AATAAGGTAATAATTGTTTTATGTCAAAGAACTGTTAGGTTATCACTGCA
CAGTGAAGAAAGGCACGactttttttgtaagatttttttgTAAGATAGTA
TTTGCATTGATGTAAAGATCTGAAAATCTgaaagattttgatgaaattga
tgatgaaataataattttccTGAACTAAAATCATTTGCAGGAGTGAGAAG
AAGGCATTACTGCCTTTTCACCTCTAACCTCtttgataatttataatata
aCTTATGCAACTACTTTTACTGTTCAAATATGAATTGCTTTGGATTAAAT
CCCAGTATAATTTCTTTCCCACTTACCATCTATATAAGGGATGTTTTTTC
CCATTCTTAATGAGTTTGTTCACTGCTTTATTTTTACTCTAagtttaatt
gaaattttttctacAGGCTGATGTATGGAGTTTAGGGATCACGCTGATTG
AATTTGCAGAGATGCAACCACCGAGCCATGAAATGCATCCCATGAGAGTA
CTAATGAGAATCACAAAATCGGATCCACCTACACTTCAACACCGCAAAAA
ATGGTAATCTATAATTACTGTATATGTCTGTCTCGGACAGATTTCCGCCT
CAGCGAGATACGGAATTggctctctttaattcgatcttcaagaggccgaa
aattttattcgaatcagataaagattcgaataacagagagtaatttaaac
cacttcgaagctgaggggaccaataatTATAGTTCGGATTANttcttgag
gtccctttctcctggaaaaaactatctgttctgtatcctgggctctcctg
gattatatcatctgttctgggaaaaaatgggactcctggaaaatgtttat
ttgttctctagaaatattatgctcctggaaaaatataacagctattctct
aagaaaattaaaatgctcctagaaaatgagacctgtAAGAAGattatgaa
gctccctggaaaaaaatctggcatctggttgcgtttttcacaatttagct
cctggattttttaaacagattgtccgctggaaaattttatgtgtttttcc
ttaaaatgtgctcgaaaatgtgctcctggattttaagaacagatgtcttt
aaggcgacccctggattttacctggNgtttaattgaaattttttctacAG
GCTGATGTATGGAGTTTAGGGATCACGCTGATTGAATTTGCAGAGATGCA
ACCACCGAGCCATGAAATGCATCCCATGAGAGTACTAATGAGAATCACAA
AATCGGATCCACCTACACTTCAACACCGCAAAAAATGGTAATCTATAATT
ACTGTATATGTCTGTCTCGGACAGATTTCCGCCTCAGCGAGATACGGAAT
Tggctctctttaattcgatcttcaagaggccgaaaattttattcgaatca
gataaagattcgaataacagagagtaatttaaaccacttcgaagctgagg
ggaccaataatTATAGTTCggattacagaaagatttgaattagagagaat
tGACTTTACAAAAGAGGTTTTCCGTTtccaaattcaataaaaatctgcaa
aaatttaaaagatcttGTTTAACTGATTGTTTAAAGTCCATCTCCGTCTT
CGACAAGAAACTTTGCTTTGGCTACTGAATTTGTAACCCTTCTATTTCTA
CCTACTTTTTGTTCTACAAATTCATTTGACCGGTTCCTCTGACCCGGTTG
AGAAACTTTCCATAGCTTTACACAGCTCTTTAAACCATGTTCTAACAACT
CATCAGTGATATCAAATCAGGATTTTCCATAGGTCCgattcaaaaaaagt
taaacaagtACTCCATCGTCTTATTTCATCATCTctgaatttcttcttct
tttttgttcGACAGGTCAGCGGATTTCCACAATTTTCTTGCGGTTTGTGT
GAATAAAGATCCGAACCAAAGACCAAGTATGGAAGAACTTCTTGAAGTAA
GTGTCTTACTGAATATTGCACATATCATATTCCTTACTGATTGAGAGGAA
GTTTCTTCAGATGGAATTTAAGTCAGCGAATGgcttgaaaaattcaattt
ggcagatgcaggatatttttggccacaAAACGCTATTATGTATTAAATAA
GAGAAAACttgttttaagccttaaatAGCACACATCTGGgaaatacaata
caatacaataatTTTTATTAAGGCGGATTTTGTCCAAATccgcaaaaaaa
cttttccgtaaaaatttcttcccttaaggtactttttttgtttcttttgt
atACTGATATTAATAaacaactgaaatattctttcttTCTTCGCATTCGA
ACCCAAAATCCTCCACTTTACAAACCATCTCAGTTTTAACCTTAAAAGGG
CTGACTGGTTATCCGGGTATCGGACCTTTGTCTTTCGGTATTCCGATGtt
cgaaagaaaaattactaccgggtgtcccagaaaaaagtccccttttttga
agtgaattttctccaGTTCTATAAACTGTTAACGAATCAATCCATTTTGC
ATTGGAAtgaggaaggataaacttaaattttgaggggtagtttgtcaaat
ttggtcacCTATATCAAAAGTTGTAGTCTAAATGCCaaaacattactttt
caaaaaagtctaaaaaaggcGAAAAATTAGAGCCATCGCACCCTACCCAC
TTCATGAATAGACTCCTGGTTAGTTTTTAAGTGATTGTATTGAAATGACA
GAGCCAATAATAACTTATTCTGGCTAAATTCGACATTCAAAGCCAGAGAT
GTATCATTTATAATGTCTATTATCCTTATAGCATCCCTTCATACGAGACG
TCAAAGACACACAGCCAGTGATCGATTTGTATCGCGAAGCTAAAGCTGAG
GTTGTTGAAACGCTGGATGACTTGCCAGAAGATTCTGATGGCAGCTTCGT
AAGTCTTCATTGTTGTTTAGATTGTTTTTCTTTACTCCAAACCATGCTAT
CGATTTGATATTGAAATACAATTTTATGTACATTAGACAGTTTTTAGCAA
AATTCAGTGGTCTCATTTTTATTGTATACGCCGTTCAACCCTTTCTGGCG
GTGCGACCAACTGGTCAGGAAACTGGTAACAAGAGtacatgaaaaattat
ttttgataacgGTATTGAAAACATAAGCGTAGAAAAAGGCTCTTGTGATA
GATGTAAGATACCCTTGCTAGCATGCTCTTCATCGCTGAGAAGTGCATAT
CTTACATGGAATTTTCTTGGCTCGTTTGCGCTGAGAATAATTCTCCTTTA
AGTTCATTACCAGTCCCCTAAAAACCGACCGCCGTCAAGGGTGGATACGA
TTACCTCAATTCAATGGGGAGGGTCATTTAATTGAATAATCTTTATTTTT
ACGTATTAGATGAATTTGGAAATGCTATGattcgaaagaaaaattaagtg
aGGGATTATTTTCATTATATTATAGGTTGAAATTTCGACTCCCAAATTGG
AAAAATCTACTTCAAGCCACACACTTGACAGCTGTAGTATAATATCTGAA
GAAAGCGATTCAAGTCCCAAAGATTCTTCGACATCTACGGGTAGTGCTAT
TCCGCCTATGCCCATCAGAAAGATGAAAGATCTCACTGGAGACACTAACT
TAAACGAAGATAAAGACAAATTCCCTAAAAGTGAAGTCAAGAAAGACATT
CCCAAACAACCGCAGAGTCCTGAATTAACAGGCTTCAAAGAAACAGGAGA
CAAGGCACCGCAGAGTCCTTCAGAGCAAACTCTCACAAAAGAAGAACTCA
AAAATCGTGAATTGGAGAAAGTTCAAAAGGAATACGCTGAGAAACAGAAA
CATGAAAAAGAGAAGGGTGGAACGCCTTCCGAAACGCCCCACCCGCCAGC
CACGCCCACGGAAACAGACTCAGCTTCGATCGCAAGTAGTGCATCATCAA
GGAAATCCTTAGGTGAAGAAAAGAAGCCTTCTGATAAGCTAGCTGGACTA
GCCTCGTTGACAGCTGACTTGAAAGCAGTTGAAGGAGAGGCTAAAGCACA
AATGAAGGTTCCGGTTGAGGTATGTAAATTATACTGTATTGCATCTTTAG
ACTACCACAAGGAAAATGGAATTTTACAGACGGACATTTATAGAGGCAAA
CTCGGTCATATAATTTCTGGTTTACTAGCATTAGAAGGCACCTGTCATTA
ACATAAACTGTTATGTTGGTGGAACTCGATTTGCTTCTTACCTTAAACCG
CATTACTTTGGAAAACGAGTGTTTATTAAGAATTATTTGGTTTCTAGGAT
GGacgtttattcgaagggggGGCGTTTTTTCAAGGGTATGTTTATTCGAA
ATAATACGTTATCCATTTTTCTTCAGGGCGACAAAGGTAACAAACAGTAT
AAAACGTTGACTCGCGTTCGACAGTACGAAAAAGACGGTAAAATGGTTAC
CGAAACTGTCCAACGTATTGTGGATGTGTCGAGTGAAGATTTCCGCGCGG
CCGCTAAGAAGGAACAACAATTAAGGTATGTTTTGTACATATGGTTAAAA
AATGTATCGACATTGGAAAATATTACCTTAAAAATGACATGTTGCGTCAG
GCTAAGCTCACAAagtatacaattttttttgttgaatcgTTTATTTTGTG
TGAGTTCTGCTGTAGACCGTTTGGCCGGGAGACCGTTTGGCCGGGAGAAA
CGTaaaggaaaaaaggaagaaacgaAGCAGTTTGATAAGATCAAAATAAA
CCTATCGGTATTATTATACCTGCAAAGGAAGGTTTCatagttcggacccc
cccccctttcttaaggggggatgacaccttccaaaaaagtgaagaagggg
gggtcagaaattttcactaaaaaggggGGGGTAGCAAGGAGGGGAggtcg
tttaagaaggggggctatatattgtagattattttccagcactgttatga
aatttggtctgcatgacaggaagttctttattttcactaaaaattatatt
tgccagacttaatttttctttactttttcccttccctttttaccataaaa
aatttagcccgaaacccttgggggatagCCATTTATACATACCTTTATAT
CTGTATCTTCCTTCTTCTAGAAAATTGGCATTACAAGAGATGAAAGCTTT
ACGTCGCGAAGAGCAGAAACAAGGAGCTGAATTAATGGCCAGGATACGTT
TACAGTGGGATCAAATCgacgaaaggtttgttttttttatatagtaGCCT
CTCGCTTATTccaacttctattattcgaatctttctatgattcgaacttg
ttctcagtccccgtcaagaaGAACCTCTTAATataatttctataattcga
atatctctgtaattcgaacaaatatgattccccgttcgagttcgagtTAG
CGCgagtcaactgtatttcttttctttaactcTTATCGGACGAAAGAGAT
GcacttttgtgaaaaagaaaactcgaaatattttgcacaaagtatGGTCA
ATAGTATCGACCAACACTTGTCCCATGCATCCGGAAAGGGTTGGAGTCGC
TGTAAAATAGTGCACAATTAGCTCTAGGCTGATCGATATCAACTGCATAC
AATACTATCTATAAAATTGATATGAGACTGAATTCGAAACATTGCTAAGC
CGGTGTGATAGTGTCGCTTTTCGTTTCGTTAAGTCGTCGTATCATTACGA
GTCGAAGGAAGAGGTCCTTGGACGTTCTTTTATTCACAAGATAAAAAATA
TCTTCGTTCGCTCCTATcttaattttgtttatttgcGATCTCATGCTTTT
CCCTGATTTTCATTCGTCCCGTTCTTGCAAAATCTTTGGCCACGCTGAAA
GTTTGGTGCATTGATCTTCAAAACTCGTTCCTTATGTTATTCTTTAAGGT
TCCACACTGAGGAAGACGAATGCAAGAAAAAGTATGAAGCGGATATCGAG
AACATGAGTCGTCAACAGAAACGAGAAATGGAAAAACTAGAACTCAACCA
AAATAATCAACTGAAACAAGACTTAAAACATTTGAAGATTGATCAGGTAC
ATTTTTAACATAATATTAATTTGTATAAGCTTTAATTGGTCACGTCCCTT
CCATTTTTCTCATTGTACCATACTTCTGCTTATATTTTAACTGTTTAGCG
TACATTTTACTACTACTTGAACATTGCCATCCTAATAGTTGCTCCGATAA
ATGTTGGCGTTTTTTTGGGGTGCTCTGTTTGGGCTGAATTGTATGTAGTA
TTTCGAaccttttttcatattttcaggaGAAACAATTGAAGACATTCCGT
GAAATGTTGAAACAAGATCAAAAACGCTTGAAGAAGGAGATTGAAAAact
tcccaaagcaaccaagaAAGAAGAGATGAGGGTCCGCAAAGAAAAACTCG
ACCTTCATCAACAGAATCAAGTCAGTATTCTATTATATTGTCAACCCCCC
ATTTGATTTATTCCGGAAGACACATTCTGTGACAAATGACTTTATGTTAC
AGTttactctctctctaattctaagctctattatttgaatcttgCTAGAA
AGTGGGTTTGattactttctgtaattcgaatctttctctaatttgtaGAA
AATGTTCGGTCCCTTTTGaagattgaattagagagagtgaactGTATTAG
AGACAGCCTAATGAAATTATTTCATGTTTCCTGAGTGTCTTTCCGGTGAA
CTTTATAGTGTGCTAGACGAACAATGTTCTCCATTCAAGCTCTTTAGGAG
GACTCCTTTTATTGGAACATGTTCTGTCTACCTCTTTGTACACAGGGATT
TTTTTATGTCTGTATTGTGTATGCTAAGCAATACGGTATTCAATATTTTT
AGGTTCAGCAATATGTTCAGCCTCTGACCCACTCCCCAGCTTCATCAATG
CACAGCTTCGCTGAGCAGATACCCTTTATGGCATACGGCCCAACTCAAAC
TGCTCGTAAAACCTCTGAGTACAATACGCACAGTCGTCTAGGCTCAAACC
ATAGCCGAGTTTTAATCAAATACTTGGATAGGTTTAATTACTAAAGCTTT
TTAGATCAAGATTAAGCCTGGGAACTAACTGTGATCGTAAGACTTCTTAC
TTTAAAAACCCTCCGCCTTATCGATGTGTGGTCAGTGAAATTTTTAATAC
TCTGATATTTTGTACTGTAGGAGCGACAATTCTTGGCGAAACAAGGTCAA
GAGAATGTCGATTTTCATCGAGCAAAAGTTGAAGAACACCGAAAGATCAT
TTTCAACAAGGAAATGGAATTCCTCAATAAGAAACATAATTTGATTCGAG
GTTTGTACCTTCGCGCTATCTTTTATTTTCGCGCTCCTCTTAAAATTGGA
TATTCGAGCACCCTTTAACTTTCGCGTAACTAGTACTTTCTaggattttt
tttgagttttctggTTAAATTTACTTTTGATCACTTTTTATAGTGTGTAT
CTTAGCTAGAATTTACATCTCAGAGTTGTTCTACCCAGGACTCATTTTAT
CTAAATAGCCCTTAAATGAGTTTTTTACACCTTCAGAACGATTACTATTT
AATTCAAAGGGAGAAATTATTCGCTGCAGGATTTAAAACTAGAAATttac
aaaatgagaaaattattttaaatgtaTTGGGCAGCCAGGCAGACTGGACA
TCTTCGAAGATGTTTTGCCTTACTAATCAATGGGATATCTACTCGAGATG
ATGGCCTTCTGAATTCCTGATTTTGAGATAGAAGCACGTCTACCAGAACt
tgaatttagaacgccatacCCGAGAACAATGTTTGATATTAGCATTTCTT
CGAATAAAAAGAATTCTGACTTTGACAATATATTTCTTCCAGCCTGGAAA
TCGGACGAATGGGAAATGGAACAAACTCGTATTTACAACAAACATAATTT
AACGAAGAAACAACTCAAAGAGACCTTTTTCTTACAACGATCACAGATGG
CCAATAGACATTCTAAGGTATGATACTGTACAAGGGTATGTCAAAATCGA
AATAAGATAATGGTTCTTAGATGCAATTACATGATTCCTATATTCGCTAt
agttgtgatttttttattggaatttcCTGAAATTTCCATCCTAGACGggt
cattttggattttttgcgTAATCTTGAAGGTTCTGTCCAAATTCATCAGA
GCCGGATACAACACATTGACGCTTATTCTAGTGCGAAAGCTTTACCTTAG
CCgatcaaaagctcatttaatattcacaAAAAGTTCGgttgaaaatcatc
aaaaagaacCGCCAACCTACCAGATCCTCTTATTACGGATTTAAATTTAT
GCTGTAAATAGAGTTGTCtctacacagacccagtatctacactaatttca
aaattcattgccgaaGAGAGTCTGTTGTCATTTTTCAAACTGACCGCTGC
AATGGaatgttggtgagagaggggagacgatgaaAGAAGTgtttctattt
ataaatcatacttcatcgcagagttTTCCGtacgggaaatttttttatca
aatagacaatgcgcacagagtgtactacaaagcgataaacgtgagataca
ctctggtacagagtataaATGGAGTAATCAGGATCGACTTGAAGATTAAC
ACTGAGCTGAACAATTTCTTCTATTCTAGGAACTGGACCAACACACGCGT
CTATATCGTACGAAAGAAGACGATTTACGTCATCGACAAGATCTAGAACG
TAAACGTCTTCCCAAGATACAACGTAACGAGTTACGTACTCGCGTACAGG
CGAAACGTAAACAGTTACGCGGTGAACGCAATAAACGTGAATCGATTGTT
GGTGGTGGGTTAAACGCTTCTGAAAAAGATAAACTACGAGAggtactgtt
tttttttgttttttttactacaaataatgggcttttccagaaaaaaattt
tacaccTACTGTTGAAgataatgatttttcgaagtatcgaacccctggat
atccactcttaaaaatgtGCTCAACCCCCTgtatatcctctcttataaag
atgcttacccctggatatcgtgttttttacttgaaaagatactttacccc
ctggatatccgctgccttgtagatatttaaccccctggatatacactttt
gaacaaaaatcgttaaccccctggttatccgatatcctcaacagaggggg
cacggactatttctggaaaagcccaatctatAAGGTATTAAATAATTATT
ACTATAAATCAATCGGAGTAAATGATGTTCCGCCGCCTAATCTTGTAGCA
TCGTATGTCTTgacatttttcaactttttttttatttttggggtATACGT
CGATATTTTCGCCAAAGCAAATTAGAACTTTTGGGGCAGCTTGCAAAATA
ATTTGACTATTTGACTAGAGTTGTGTTGACTTTTTCATTAAAAGCGAATA
CCCAGGGCGTTCGTTTCTCACAACTTGGATTACCTGAAACCTGGATCAGG
CTACGCTCGACTTTTCTCTTAATCTAGTCTAATATTTACTAAATGACAGT
ACGAAGACAAAGTGCGAAAACAACAAGCGGAAGACACGAACCGAATGATT
GGCCGTCATCAACAAGAAGAGAATGACCTTCGACAAAGCGCTGATAACGA
ACTCAACGAGCTGAAACAGTTGCAGGTATGTTTTGCTTTTTTAGTTTGAC
GTTCACTTGAATCCAATTATACCACTAGAAAGCTCTGGAAAGtcgataaa
aaattttgaaacgaaTATGGCAGATTTCTCAACCTGATCCTAGTGATGGA
AATAGTGGAAATATGCAAGAAATCGGCCAAAAAGTCACACTCCCAGATGA
AATATATcgagtttttcaaatttttacaggACTACATGGACGTTATTTCA
AATTTGCTAACATTTCTTTACTTAACTTTTTATTAAAATGTACACAATTT
ACGGCATCTTCCGAGTTGTATGTTACAGTTGCACCACTGTTTGGGAAAGA
TTCGCACTAATCCTTCAAAAGGTTTGACCAAGAATATGCAGTGaccttga
gaaaaaaaattatttcttccaTAGAACGAGAAACGACACATGTTGGTTCA
AAGTGAAAGTGAGAAATTGAAAGAACGTGAAGTCAAACACTCAACCGAAC
TCAACGAATGGAAAGAAAGTCTGGCTCCAAGAAAAAGGgtataatttgat
attttttgctgtCTGTCGTAGGGCCGCCTTTAAAAAAGGGGAACAAATTA
AGTGGCCaatgtttcttgatttttgtctGTGAGGTCTAAGGTTAAATTTT
GTTTACTCACTCGCGCGTTACTAAAGGAACCTCGAATTTATGTTGTTATG
TGGGTTTAGTAAATATTTTCCATTGCTTTTCCAAGATCAGTAAAAAGCTT
CATTAAACAGTAGATTAtggttttaaagcttttttcacatgtacgtaaaa
tttttcttaaaacctTGAAGGATGGAGAATCTCtctaagcttacgtagtg
ttttaagggcttatgtagagtttgcttacgttcaaaaagttttgaaagac
cctcttaatcaacaaaaactctacataatggaggggaaattcccaaaaga
cagccttacgaacggttttccgtaaggtctaaagtaaaattgtacgtgca
tgtgaaaaaagcttaacaCGGAAAGTTCAGTCGGATTTTACCTCTTTTTT
CAGACActcgaagcagaatttttccgGCAAAAAGAAGAGCAACGTGAATT
TTACTGTCAGACAAGCACTGACGTGTACGTAGCGGACGGACAAAGTGGTC
AGAACGGTGTACGTAGTACGCCGGCAGCGCAACGACAAGCATCTCAGACA
CCGTCTTCGCCTGACGTTCAAGGTGCTGGAATCTATTGAGTGGTATTGAA
TTTCCTTTAGAGAGTATTATGCTGAGGAATCTCATATGATTTCACGGGTG
AAGTTTGTATGAGTAATCACACATACTTCGAGTGACCGCTCTTCCACTCT
TTGTAGATGCCTTTGATTTCGATGTTCAGTTCATAGCAAATCATGATGTT
GAGGACTAACGCGAAAAGAGGAGAATGATTCAGCACCATTGCGCTATTCC
ATAAAAGATCCCCCTCGCATGTTAAGCAAGCTATTTCGGAAGTGTGGAAG
TCTTCCCTGTTGATACCAACTGTAATCTTAGAGATCCCCTTAACATTTAG
TCAATTATTTTTGTTAGTCTTTCAGAGCCCTCTCGTGGGTTTTTAGATTA
TTTTGAGACCACTTTTTGCACGGAAAAAGGAGCTCTTCAACgcagagggg
gggggggtgaaggaTCTTTTTATGGATTAGCTCATTTGAGTTGGTGTTTT
ATCTATCACCCTTGGTTACGGACACTTATTGAAACTAGAACATTGGTATA
TCAATGTATTGTGTCTCCTGTAGGTTCTCATTTGGTTGGTTGTGTATGTT
TTTGTTCAATTCTGTTTTGTCTATTATTACATTATAAAAATTATTACAat
ttattactttttacaatttcaatacttataagaaaatcaaaaattttata
ttttatgaaaatggTAACGAATTTGGGAGAAAAAAATTGGGAGGGGGGCT
TTTCTGTATGTTTGGTTACTAAtgctaaattttccaatttGGGGGACTTT
CGGAATATTTCAACACAACTGGTGGTGGGTAGGAccagggctagagtaga
atctctaacctttctcaggtaagaaaaagtgaagccttaaaaaatgcgcc
gtatttttgacgacagattgaatctagcaattccttN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031564	XLOC_031564	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_166	supercontig	scaffold_166:531432..546068 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.85047	3.50484	13.6409	13.7052	16.4059	13.1746	21.8107	23.5497	21.7729	17.2123	16.7685	12.4566	19.2736	17.8557	18.5229	16.6035	24.0612	24.6513	15.9877	23.7462	18.8426	23.1342	9.059	12.2941	21.9896	22.1251	15.308	16.3205	17.7749	12.5878

Blast

[Close]

BLAST of TCONS_00049791 vs. Swiss-Prot (Human)
Match: STK10 (Serine/threonine-protein kinase 10 OS=Homo sapiens GN=STK10 PE=1 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 5.937e-124
Identity = 176/300 (58.67%), Postives = 234/300 (78.00%), Query Frame = 3

Query:  126 KNKVYKYLTKGVDPNEIWEICGELGDGTFGKVYKAKRKSDGALTAAKIVDIKNEQDLDDFMVEIDILAECKHKYVVNLFETYYFEDKLWMMLEFCPGGAMDDIILDLERGLDETTIKSLCRQMVEGLAFLHSCGVIHRDLKAGNVLLTETGDIKLADFGVSAKCKTAQGRRNTFIGTPYWMAPEVVVTETMHDETYDNKADVWSLGITLIEFAEMQPPSHEMHPMRVLMRITKSDPPTLQHRKKWSADFHNFLAVCVNKDPNQRPSMEELLEHPFIRDVKDTQPVIDLYREAKAEVVETL 1025
            K++ Y+++ + +DPNE+WEI GELGDG FGKVYKAK K  GAL AAK+++ K+E++L+D++VEI+ILA C H Y+V L   YY + KLW+M+EFCPGGA+D I+L+L+RGL E  I+ +CRQM+E L FLHS  +IHRDLKAGNVL+T  GDI+LADFGVSAK      +R++FIGTPYWMAPEVV+ ETM D  YD KAD+WSLGITLIE A+++PP HE++PMRVL++I KSDPPTL    KWS +F +FL + ++K+P  RPS  +LLEHPF+  +   + + +L  EAKAEV+E +
Sbjct:   19 KSREYEHVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSITSNKALRELVAEAKAEVMEEI 318

HSP 2 Score: 204.912 bits (520), Expect = 8.723e-54
Identity = 143/416 (34.38%), Postives = 256/416 (61.54%), Query Frame = 3

Query: 1677 KTLTRVRQYEKDGKMVTETVQRIVDVSSEDFRAAAKKEQQLRKLALQEMKALR---REEQKQGAELMARIRLQWDQIDERFHTEEDECKKKYEADIENMSRQQKREMEKLELNQNNQLKQDLKHLKIDQEKQLKTFREMLKQDQKRLKKEIEKLPKATKKEEMRVRKEKLDLHQQNQERQFLAKQGQENVDFHRAKVE-EHRKIIFNKEMEFLNKKHNLIRAWKSDEWEMEQTRIYNKHNLTKKQLKETFFLQRSQMANRHSKELDQHTRLYRTKEDDLRHRQDLERKRLPKIQRNELRTRVQAKRKQLRGERNKRESIVGGGLNASEKDKLREYEDKVRKQQAEDTNRMIGRHQQEENDLRQSADNELNELKQLQNEKRHMLVQSESEKLKEREVKHSTELNEWKESLAPRKRTL 2912
            KTL R R++  DG  V+ T  +I+   SED     KK++++R L  QE++ LR   +EE +   +L  +  LQ +Q+ +RF  E +  KK ++ ++EN+ RQQK+++EK+E +   + +++ + ++++Q++    F+E LK  +K +K E+EKLP+  +KE M+ + E+    +Q  +R F+AKQ +E+++    ++  ++R+ I +KE E L KK  L+R  ++  WEME+ ++  +H L K+QLK+ +FLQR ++  +H KE +Q  R  +   + L+ RQ  E+ RLPKIQR+E +TR+   +K L         I GGG  A +++K++++  +  K+Q  +  +   +H+ +  D+    ++ ++EL+QLQNEK H+LV+ E++KLK  +  H+  L EW++ L PRK+ L
Sbjct:  525 KTLKRTRKFVVDGVEVSITTSKII---SED----EKKDEEMRFLRRQELRELRLLQKEEHRNQTQLSNKHELQLEQMHKRFEQEINAKKKFFDTELENLERQQKQQVEKMEQDHAVRRREEARRIRLEQDRDYTRFQEQLKLMKKEVKNEVEKLPRQQRKESMKQKMEEHTQKKQLLDRDFVAKQ-KEDLELAMKRLTTDNRREICDKERECLMKKQELLRDREAALWEMEEHQLQERHQLVKQQLKDQYFLQRHELLRKHEKEREQMQRYNQRMIEQLKVRQQQEKARLPKIQRSEGKTRMAMYKKSLH--------INGGGSAAEQREKIKQFSQQEEKRQKSERLQQQQKHENQMRDMLAQCESNMSELQQLQNEKCHLLVEHETQKLKALDESHNQNLKEWRDKLRPRKKAL 924

The following BLAST results are available for this feature:

BLAST of TCONS_00049791 vs. Swiss-Prot (Human)

BLAST of TCONS_00049791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STK10	5.937e-124	58.67	Serine/threonine-protein kinase 10 OS=Homo sapiens...	[more]

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TCONS_00049791 (transcript) - C. hemisphaerica