|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049814 ID=TCONS_00049814|Name=TCONS_00049814|organism=Clytia hemisphaerica|type=transcript|length=1519bp
aaaaatgtctaaaaatctATAAAGTGCCAAGTGAAAACGAAATCAAGAAT
ATAACAGACAGCGTTTAAGTTGTaactagttttttttaataataacaatt
aaaaaataattggcTATTTATACGAAAGAATAGGAGTATACTGCTACTAA
TAATATAACAATTAATTCATAATAAATCATTGGTAAAATATAATGAcgga
ttattttttaatgaaatttcctaaattatttcaaatttctaGCGACAAAT
AAAAGCTCTTCTTGCcaaaacgtcatcaaaatctcTACACAAACACTACA
TGAGgctaatctcataacagatcatccattctgcgcacACCACGGTCTGC
TCTAAAGTGTTGTGGTGAGTGTAACGAATGAGCCATGGTctttagagtga
atacgtgTCATGCGCAGAGGATCAGAATCTGATTGGAGATTAACACAAAG
TTTGAATTCATAGTCGTAAGAAAGTACAGCTAACATTctttaatagacct
tatcggaGTTTATTCATATCCACACCatttgtaattcgaactaaaacaat
AATCACCTCAGCTGGTCTATAGCGGTTATAAAGTATCTTTGTAATCTATC
TCGCCAGAAAATACAATTTCTCGTTCCTTGAAAAACAAATGGTAAGGTGT
GAAAACATTCAGTAGAAGCAGCAAAAGCTCACCTCCTTTCGATTTTTCTA
CAGAGACACAAAATAAATCGTAGCAAAATAACGAAAAACTACATATGTAT
AACCCTAATAAAAACGATACAGGGGTCACCCAGGAAGCTATAAACCGAAA
TATTACGAAAATTCTCTCCTCAAAGATcgtcaaatttcataaagaacaaC
CATAGTGAGTGACCCATTCgattttttacaataaaatatTCTAATATATG
AAAACGATCGCAAATAATTCATGCTGATGAATATGCTCTTAAAGACGTTT
ACTGATACCAAGAATTTGAGAGCATTGACAAAAATTCCCAAATTACATGC
ATGAAACTACTTATTCCTCAAAAAAGCTTTATTTTAAGGTTTAGTATAGT
TTAAGAGAAATTCAGGAATGATTATAAAGAGAAATGGTTATGTACATAAA
AATAAAGTTAACAAAATGGAATTGAATGTATTTGGTCACAAGAATTATTC
CTGTTCGCTACTTTTATATAAAATGATAGAGAAATCTACACAATTTGAAG
TTGTTTGCCCCCGGGGAACATCACTGTATCAATTTTTATGATCAAAACAA
CGAGGGTGGTAGGTTCTCAACCACCCTGGGactgcaaaaatcagaaaagc
tTTATAGAGTTAATAGTGTCAATAACAATAATTGGAGGTCCAACCCAATG
aaatataagcccgaagggctagaatcgaatctccttggtagtatttgaag
ccaaaaaatcctaccaaagttgcgcggccttgagcggctcgcctggtttt
tacacaaatgacagattaaaactaaaatttaccgctaaatttcgaaaaaa
atatcaatcgtaaacaaag Run BLAST on NCBI transcript from alignment at scaffold_166:546153..547829- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049814 ID=TCONS_00049814|Name=TCONS_00049814|organism=Clytia hemisphaerica|type=transcript|length=1677bp|location=Sequence derived from alignment at scaffold_166:546153..547829- (Clytia hemisphaerica)
AAAAATGTCTAAAAATCTATAAAGTGCCAAGTGAAAACGAAATCAAGAAT
ATAACAGACAGCGTTTAAGTTGTAACTAGTTTTTTTTAATAATAACAATT
AAAAAATAATTGGCTATTTATACGAAAGAATAGGAGTATACTGCTACTAA
TAATATAACAATTAATTCATAATAAATCATTGGTAAAATATAATGACGGA
TTATTTTTTAATGAAATTTCCTAAATTATTTCAAATTTCTAGCGACAAAT
AAAAGCTCTTCTTGCCAAAACGTCATCAAAATCTCTACACAAACACTACA
TGAGGCTAATCTCATAACAGATCATCCATTCTGCGCACACCACGGTCTGC
TCTAAAGTGTTGTGGTGAGTGTAACGAATGAGCCATGGTCTTTAGAGTGA
ATACGTGTCATGCGCAGAGGATCAGAATCTGATTGGAGATTAACACAAAG
TTTGAATTCATAGTCGTAAGAAAGTACAGCTAACATTCTTTAATAGACCT
TATCGGAGTTTTTTATTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTT
CGAGTGTGTTACAAGAGAAATCTCTTAGGAACTCCTCGATGGAATTCTAT
TGTAATACACTCGAAACGATCCCACAATGCATCGATTTTTTAGAAAAATT
AAAAATTCCGATAAGGTTTATTCATATCCACACCATTTGTAATTCGAACT
AAAACAATAATCACCTCAGCTGGTCTATAGCGGTTATAAAGTATCTTTGT
AATCTATCTCGCCAGAAAATACAATTTCTCGTTCCTTGAAAAACAAATGG
TAAGGTGTGAAAACATTCAGTAGAAGCAGCAAAAGCTCACCTCCTTTCGA
TTTTTCTACAGAGACACAAAATAAATCGTAGCAAAATAACGAAAAACTAC
ATATGTATAACCCTAATAAAAACGATACAGGGGTCACCCAGGAAGCTATA
AACCGAAATATTACGAAAATTCTCTCCTCAAAGATCGTCAAATTTCATAA
AGAACAACCATAGTGAGTGACCCATTCGATTTTTTACAATAAAATATTCT
AATATATGAAAACGATCGCAAATAATTCATGCTGATGAATATGCTCTTAA
AGACGTTTACTGATACCAAGAATTTGAGAGCATTGACAAAAATTCCCAAA
TTACATGCATGAAACTACTTATTCCTCAAAAAAGCTTTATTTTAAGGTTT
AGTATAGTTTAAGAGAAATTCAGGAATGATTATAAAGAGAAATGGTTATG
TACATAAAAATAAAGTTAACAAAATGGAATTGAATGTATTTGGTCACAAG
AATTATTCCTGTTCGCTACTTTTATATAAAATGATAGAGAAATCTACACA
ATTTGAAGTTGTTTGCCCCCGGGGAACATCACTGTATCAATTTTTATGAT
CAAAACAACGAGGGTGGTAGGTTCTCAACCACCCTGGGACTGCAAAAATC
AGAAAAGCTTTATAGAGTTAATAGTGTCAATAACAATAATTGGAGGTCCA
ACCCAATGAAATATAAGCCCGAAGGGCTAGAATCGAATCTCCTTGGTAGT
ATTTGAAGCCAAAAAATCCTACCAAAGTTGCGCGGCCTTGAGCGGCTCGC
CTGGTTTTTACACAAATGACAGATTAAAACTAAAATTTACCGCTAAATTT
CGAAAAAAATATCAATCGTAAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049814-exon-scaffold_166-1575043694:547323..547829 | TCONS_00049814-exon-scaffold_166-1575043694:547323..547829 | Clytia hemisphaerica | exon |
| TCONS_00049814-exon-scaffold_166-1575043694:546153..547164 | TCONS_00049814-exon-scaffold_166-1575043694:546153..547164 | Clytia hemisphaerica | exon |
| TCONS_00049814-exon-scaffold_166-1510915933:547323..547829 | TCONS_00049814-exon-scaffold_166-1510915933:547323..547829 | Clytia hemisphaerica | exon |
| TCONS_00049814-exon-scaffold_166-1510915933:546153..547164 | TCONS_00049814-exon-scaffold_166-1510915933:546153..547164 | Clytia hemisphaerica | exon |
| TCONS_00049814-exon-scaffold_166-1491911889:547323..547829 | TCONS_00049814-exon-scaffold_166-1491911889:547323..547829 | Clytia hemisphaerica | exon |
| TCONS_00049814-exon-scaffold_166-1491911889:546153..547164 | TCONS_00049814-exon-scaffold_166-1491911889:546153..547164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:546153..547829 - |
Blast
The following BLAST results are available for this feature:
|
