TCONS_00049847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049847
Unique NameTCONS_00049847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049847 ID=TCONS_00049847|Name=TCONS_00049847|organism=Clytia hemisphaerica|type=transcript|length=364bp
CTCAGGTTTTTTAGATCTATCAGCCAAAGTTTTGAGATGTGATCTCATCA
TGATAGCTTTTCTGAGGTTCTTGGTCACATGGGGTTTGCTATTGGCTCTA
AGATACTTGGTTTTCAAAAGTGCATGTCTATTTATAATATTTGTAAAagt
attttcaaattcatcataACTACTCAAAGCATTGTTGAAAATACACGTGT
TAAGCTCGTAAAGAAATTGATCTTcgttaaaatttttataatctcGATAT
TTTATAATTCTAGGTGGTAANTAAAGAAATTGATCTTcgttaaaattttt
ataatctcGATATTTTATAATTCTAGATGGTAATTTTACATACTTAGTCT
TAAGCATAGCATAA
Run BLAST on NCBI

transcript from alignment at scaffold_166:548176..548539

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049847 ID=TCONS_00049847|Name=TCONS_00049847|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at scaffold_166:548176..548539 (Clytia hemisphaerica)
TTATGCTATGCTTAAGACTAAGTATGTAAAATTACCATCTAGAATTATAA
AATATCgagattataaaaattttaacgAAGATCAATTTCTTTANTTACCA
CCTAGAATTATAAAATATCgagattataaaaattttaacgAAGATCAATT
TCTTTACGAGCTTAACACGTGTATTTTCAACAATGCTTTGAGTAGTtatg
atgaatttgaaaatactTTTACAAATATTATAAATAGACATGCACTTTTG
AAAACCAAGTATCTTAGAGCCAATAGCAAACCCCATGTGACCAAGAACCT
CAGAAAAGCTATCATGATGAGATCACATCTCAAAACTTTGGCTGATAGAT
CTAAAAAACCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031606XLOC_031606Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049847-exon-scaffold_166-1491911889:548176..548539TCONS_00049847-exon-scaffold_166-1491911889:548176..548539Clytia hemisphaericaexon
TCONS_00049847-exon-scaffold_166-1510915933:548176..548539TCONS_00049847-exon-scaffold_166-1510915933:548176..548539Clytia hemisphaericaexon
TCONS_00049847-exon-scaffold_166-1575043694:548176..548539TCONS_00049847-exon-scaffold_166-1575043694:548176..548539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:548176..548539 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457777	0.669607	0.777478	1.52128	20.6808	10.4883	13.8308	8.81582	1.54304	5.01717	1.39137	2.59146	0.45668	0.632355	0.909794	0.278957	0.687303	1.40893	0	0	0.88521	1.61915	2.09951	0.715786	0.245748	1.09662	1.25541	0	0.508097	0.258835
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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