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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049848 ID=TCONS_00049848|Name=TCONS_00049848|organism=Clytia hemisphaerica|type=transcript|length=1023bp
AAATTTCTATTTACATCGTCAATACTCGAACCAGTAGCGGATAAAGTATT
GTCATCAGCAAAGTTTGAGATTTCTTGAATAACATAAAATAAATCATTAA
TGAATATGTTGAATAGTAAAGGACCTAAAATGGATCCCTGGGGAACGCCT
AAGAAAATATCGAGCCAAGAACTAAGATGTGAACCTATACGAACACGATG
CTTTCTATTGCTGAGGTAACTATGCATGAGTTTTAGACTGTCATTTCCGA
GGCCATACGCTGAAAGTTTGGCTAACAAAAGATCATGAGGTAAGCAGTCA
AAGGCTTTCGATAAGTCAATTAGAACAGCACCCACTTTTTTGTTATCAGC
AAGAGCATTTTGCCAACTTCTTAATAGATTTAATACGGCATGCTGCGTGC
TATGCCCCTTCCGAAATCCACAAAGGTGTTTTGAAAACGAAGATTCCAAA
TGCTCGTTAAGCTGATCTGCTAAGATACGTTCAACAATCTTGGAGATGAC
AGGAAGTAAACTAATGGGTCTGTAATTTGACTTATCAGTCAAGGAGCctt
ttttaaaacttggaaTGATGTCAGCGAGTTTAAGCCTATCAGGAAATGTT
CCTGACATAAGACAGTCATTGAAGCAAAATGTTAGAAATGGAACACACGA
CCTGGCAGCAATTTTAAGCACTCGAGTCGGTATATTTCCACTTACAGATT
TCTTTGGTTTAAGGCTCAAAATAGCTTTGAGAATGTCTTGCTCTCCAATT
TGGGAAAACTCAAACTTAGCCTCAGAATTTCTGTGTGTAATGATTTCACT
GATGCTaggatgattttcaaattttgaaattaaggaATTATCAGAATTCA
GAGGCAAGCTATCGCAGTCCCAACTTGGAATATCAAGATTTTCGGTGATC
CTATTAAAATAGGAATTGAAAACATCTGCAACTTGATTATCAGATGtata
taaaatatcattttcaagcaattgAATTCTTCCATCATTTACACAACTTT
TATCAGAGAATTTAGGTTTGANN Run BLAST on NCBI protein sequence of TCONS_00049848-protein >TCONS_00049848-protein ID=TCONS_00049848-protein|Name=TCONS_00049848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
XKPKFSDKSCVNDGRIQLLENDILYTSDNQVADVFNSYFNRITENLDIPS
WDCDSLPLNSDNSLISKFENHPSISEIITHRNSEAKFEFSQIGEQDILKA
ILSLKPKKSVSGNIPTRVLKIAARSCVPFLTFCFNDCLMSGTFPDRLKLA
DIIPSFKKGSLTDKSNYRPISLLPVISKIVERILADQLNEHLESSFSKHL
CGFRKGHSTQHAVLNLLRSWQNALADNKKVGAVLIDLSKAFDCLPHDLLL
AKLSAYGLGNDSLKLMHSYLSNRKHRVRIGSHLSSWLDIFLGVPQGSILG
PLLFNIFINDLFYVIQEISNFADDNTLSATGSSIDDVNRN Run BLAST on NCBI transcript from alignment at scaffold_166:549117..550139 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049848 ID=TCONS_00049848|Name=TCONS_00049848|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at scaffold_166:549117..550139 (Clytia hemisphaerica)
NNTCAAACCTAAATTCTCTGATAAAAGTTGTGTAAATGATGGAAGAATTc
aattgcttgaaaatgatattttatataCATCTGATAATCAAGTTGCAGAT
GTTTTCAATTCCTATTTTAATAGGATCACCGAAAATCTTGATATTCCAAG
TTGGGACTGCGATAGCTTGCCTCTGAATTCTGATAATtccttaatttcaa
aatttgaaaatcatcctAGCATCAGTGAAATCATTACACACAGAAATTCT
GAGGCTAAGTTTGAGTTTTCCCAAATTGGAGAGCAAGACATTCTCAAAGC
TATTTTGAGCCTTAAACCAAAGAAATCTGTAAGTGGAAATATACCGACTC
GAGTGCTTAAAATTGCTGCCAGGTCGTGTGTTCCATTTCTAACATTTTGC
TTCAATGACTGTCTTATGTCAGGAACATTTCCTGATAGGCTTAAACTCGC
TGACATCAttccaagttttaaaaaagGCTCCTTGACTGATAAGTCAAATT
ACAGACCCATTAGTTTACTTCCTGTCATCTCCAAGATTGTTGAACGTATC
TTAGCAGATCAGCTTAACGAGCATTTGGAATCTTCGTTTTCAAAACACCT
TTGTGGATTTCGGAAGGGGCATAGCACGCAGCATGCCGTATTAAATCTAT
TAAGAAGTTGGCAAAATGCTCTTGCTGATAACAAAAAAGTGGGTGCTGTT
CTAATTGACTTATCGAAAGCCTTTGACTGCTTACCTCATGATCTTTTGTT
AGCCAAACTTTCAGCGTATGGCCTCGGAAATGACAGTCTAAAACTCATGC
ATAGTTACCTCAGCAATAGAAAGCATCGTGTTCGTATAGGTTCACATCTT
AGTTCTTGGCTCGATATTTTCTTAGGCGTTCCCCAGGGATCCATTTTAGG
TCCTTTACTATTCAACATATTCATTAATGATTTATTTTATGTTATTCAAG
AAATCTCAAACTTTGCTGATGACAATACTTTATCCGCTACTGGTTCGAGT
ATTGACGATGTAAATAGAAATTT Coding sequence (CDS) from alignment at scaffold_166:549117..550139 >TCONS_00049848 ID=TCONS_00049848|Name=TCONS_00049848|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_166:549117..550139 (Clytia hemisphaerica)
NTCAAACCTAAATTCTCTGATAAAAGTTGTGTAAATGATGGAAGAATTca
attgcttgaaaatgatattttatataCATCTGATAATCAAGTTGCAGATG
TTTTCAATTCCTATTTTAATAGGATCACCGAAAATCTTGATATTCCAAGT
TGGGACTGCGATAGCTTGCCTCTGAATTCTGATAATtccttaatttcaaa
atttgaaaatcatcctAGCATCAGTGAAATCATTACACACAGAAATTCTG
AGGCTAAGTTTGAGTTTTCCCAAATTGGAGAGCAAGACATTCTCAAAGCT
ATTTTGAGCCTTAAACCAAAGAAATCTGTAAGTGGAAATATACCGACTCG
AGTGCTTAAAATTGCTGCCAGGTCGTGTGTTCCATTTCTAACATTTTGCT
TCAATGACTGTCTTATGTCAGGAACATTTCCTGATAGGCTTAAACTCGCT
GACATCAttccaagttttaaaaaagGCTCCTTGACTGATAAGTCAAATTA
CAGACCCATTAGTTTACTTCCTGTCATCTCCAAGATTGTTGAACGTATCT
TAGCAGATCAGCTTAACGAGCATTTGGAATCTTCGTTTTCAAAACACCTT
TGTGGATTTCGGAAGGGGCATAGCACGCAGCATGCCGTATTAAATCTATT
AAGAAGTTGGCAAAATGCTCTTGCTGATAACAAAAAAGTGGGTGCTGTTC
TAATTGACTTATCGAAAGCCTTTGACTGCTTACCTCATGATCTTTTGTTA
GCCAAACTTTCAGCGTATGGCCTCGGAAATGACAGTCTAAAACTCATGCA
TAGTTACCTCAGCAATAGAAAGCATCGTGTTCGTATAGGTTCACATCTTA
GTTCTTGGCTCGATATTTTCTTAGGCGTTCCCCAGGGATCCATTTTAGGT
CCTTTACTATTCAACATATTCATTAATGATTTATTTTATGTTATTCAAGA
AATCTCAAACTTTGCTGATGACAATACTTTATCCGCTACTGGTTCGAGTA
TTGACGATGTAAATAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049848-exon-scaffold_166-1491911889:549117..550139 | TCONS_00049848-exon-scaffold_166-1491911889:549117..550139 | Clytia hemisphaerica | exon |
| TCONS_00049848-exon-scaffold_166-1510915933:549117..550139 | TCONS_00049848-exon-scaffold_166-1510915933:549117..550139 | Clytia hemisphaerica | exon |
| TCONS_00049848-exon-scaffold_166-1575043694:549117..550139 | TCONS_00049848-exon-scaffold_166-1575043694:549117..550139 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:549117..550139 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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