TCONS_00049850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049850
Unique NameTCONS_00049850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049850 ID=TCONS_00049850|Name=TCONS_00049850|organism=Clytia hemisphaerica|type=transcript|length=1707bp
GTCCGATGGTtgtgcttaactaaggctttgATGACGCTGGGTTCATGAAC
ATATAGGTTATCAGGCTGTAATAGTGGAAAtattaaagtgaaaaaaaatg
aggTGAAGCTGGGGTATTTTGGCTAAATAATCTATTGAAAATAATCGTAT
TACTATACTTAGAGTTAGATGATTTAATAATCGTTTAAATTTTGACCAAG
CGTTTCCGGAAGGAGTCCTAATCCAACGATACCAAGAACGCTTAAGGACC
CCatgaaaacaacaacaaaattccACTCTATATAAATTAAATGCTGAAAC
AATAGTGgcgataaaattgaaaaaactttccaaaTTGTAGCTGATATTCC
TGATGCAGTACTTCTGATATTTGTTGGGAACAATTCTGAGgaaaacaaga
aaagaaaacacGTCGAACTCGATCCAAACCCCGACGATAAAAACAACAAT
ACATACGTCATGACGGACGGTAAACATAATAACTGCGTGAAATATGATAT
CGCCATTAATATAGTCGTAAATCCAAGTAGAATTTTACGACCTTGCTTTT
CAACAACAAAGTAACCGATTATTGATCCTGGTAACAGGCCAAAATTGATC
CAAAACGAACGTAAGATTTGAGAATCGGTCAAGGGCGCACATTTCATCAT
CACCGTTGCATCATTGAATCCACAAGAACTTGGGTGTTGGATTTTATAAT
CGATAAAGAACGGAATACCATAAAAACTGAGAAATATGGGTACACCATTA
ATTGAtaatcctaaaatctttttccaaTGTTTTGTAAAAACTGTAAAGTA
ACCTGGACTTTGACCCTTTGTTATGTGTCTACCTGTTGAAATCTCTTCAC
CATGGAAATTCGCTGGCAATGTGATAATGCTTGTCATTGCAATCTCATCT
AACATGTCCGATACTTTATCAGTTTCTCCATTTATACTTAGGAATCGGAT
GGATTCTGGCATCAGCAACATTAGGCATATCAGTAAAATGTACGGCAGTA
TTGACCAAAGAATAAAATTCCTCCAACCATACAAGGTCAATGTGAAATAT
GATACTCCGATTGCTGCAAGACTGCCAAATATGAATATATCGTTCAGAAA
TAAGACCGCTTTAGCATGATTTCTTCTGCTGGTGAATTCAGTACTATAGA
CAACAGTCAGTACAATACATCCACCATAACCAACTCCTACCAAAAATCTC
AAGACCACATGTAGCACATAGGAATCACTTGCAACTGATAACAACACAAA
ATAAACCTGGAATGTGACAGCTACAATAAGTGTCTTTTTACGGCCATAGA
CATCAGCCATTCGTCCCCAGTACCATGATCCAAGAGCTTCGCCAATGAAA
AAGGTGATCGATATGAGAGTCACTTCAAATGTTGTTAAATTCAATTCACA
CTGCAACGCTGGNAGATATCAGCTATTCGTCCCCAGTACCATGATCCAAG
AGCTTCGCCAATGAAAAAGGTGATCGATATGAGAGTCACTTCAAATGTTG
TTAAATTCAATTCACACTGCAACGCTGGAGCAATCAAAACATTTATGTAT
AACACGAACCCACTTATAAACGTAGGAATGTTTGCCAAACATATGGCTTT
GACCGTGAACAGATTATAAAATGGTAAATATTCAATAACATCGTCGAGGG
ACCGTATTAGCTTTTTCTTTTCTGTCGAAGGTTTCATTATCGCTCCTGAT
ATAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00049850-protein

>TCONS_00049850-protein ID=TCONS_00049850-protein|Name=TCONS_00049850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MADVYGRKKTLIVAVTFQVYFVLLSVASDSYVLHVVLRFLVGVGYGGCIV
LTVVYSTEFTSRRNHAKAVLFLNDIFIFGSLAAIGVSYFTLTLYGWRNFI
LWSILPYILLICLMLLMPESIRFLSINGETDKVSDMLDEIAMTSIITLPA
NFHGEEISTGRHITKGQSPGYFTVFTKHWKKILGLSINGVPIFLSFYGIP
FFIDYKIQHPSSCGFNDATVMMKCAPLTDSQILRSFWINFGLLPGSIIGY
FVVEKQGRKILLGFTTILMAISYFTQLLCLPSVMTYVLLFLSSGFGSSST
CFLFLFSSELFPTNIRSTASGISATIWKVFSILSPLLFQHLIYIEWNFVV
VFMGSLSVLGIVGLGLLPETLGQNLNDY
Run BLAST on NCBI

transcript from alignment at scaffold_166:561012..562718

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049850 ID=TCONS_00049850|Name=TCONS_00049850|organism=Clytia hemisphaerica|type=transcript|length=1707bp|location=Sequence derived from alignment at scaffold_166:561012..562718 (Clytia hemisphaerica)
GTTTTATATCAGGAGCGATAATGAAACCTTCGACAGAAAAGAAAAAGCTA
ATACGGTCCCTCGACGATGTTATTGAATATTTACCATTTTATAATCTGTT
CACGGTCAAAGCCATATGTTTGGCAAACATTCCTACGTTTATAAGTGGGT
TCGTGTTATACATAAATGTTTTGATTGCTCCAGCGTTGCAGTGTGAATTG
AATTTAACAACATTTGAAGTGACTCTCATATCGATCACCTTTTTCATTGG
CGAAGCTCTTGGATCATGGTACTGGGGACGAATAGCTGATATCTNCCAGC
GTTGCAGTGTGAATTGAATTTAACAACATTTGAAGTGACTCTCATATCGA
TCACCTTTTTCATTGGCGAAGCTCTTGGATCATGGTACTGGGGACGAATG
GCTGATGTCTATGGCCGTAAAAAGACACTTATTGTAGCTGTCACATTCCA
GGTTTATTTTGTGTTGTTATCAGTTGCAAGTGATTCCTATGTGCTACATG
TGGTCTTGAGATTTTTGGTAGGAGTTGGTTATGGTGGATGTATTGTACTG
ACTGTTGTCTATAGTACTGAATTCACCAGCAGAAGAAATCATGCTAAAGC
GGTCTTATTTCTGAACGATATATTCATATTTGGCAGTCTTGCAGCAATCG
GAGTATCATATTTCACATTGACCTTGTATGGTTGGAGGAATTTTATTCTT
TGGTCAATACTGCCGTACATTTTACTGATATGCCTAATGTTGCTGATGCC
AGAATCCATCCGATTCCTAAGTATAAATGGAGAAACTGATAAAGTATCGG
ACATGTTAGATGAGATTGCAATGACAAGCATTATCACATTGCCAGCGAAT
TTCCATGGTGAAGAGATTTCAACAGGTAGACACATAACAAAGGGTCAAAG
TCCAGGTTACTTTACAGTTTTTACAAAACAttggaaaaagattttaggat
taTCAATTAATGGTGTACCCATATTTCTCAGTTTTTATGGTATTCCGTTC
TTTATCGATTATAAAATCCAACACCCAAGTTCTTGTGGATTCAATGATGC
AACGGTGATGATGAAATGTGCGCCCTTGACCGATTCTCAAATCTTACGTT
CGTTTTGGATCAATTTTGGCCTGTTACCAGGATCAATAATCGGTTACTTT
GTTGTTGAAAAGCAAGGTCGTAAAATTCTACTTGGATTTACGACTATATT
AATGGCGATATCATATTTCACGCAGTTATTATGTTTACCGTCCGTCATGA
CGTATGTATTGTTGTTTTTATCGTCGGGGTTTGGATCGAGTTCGACgtgt
tttcttttcttgttttcCTCAGAATTGTTCCCAACAAATATCAGAAGTAC
TGCATCAGGAATATCAGCTACAAtttggaaagttttttcaattttatcgc
CACTATTGTTTCAGCATTTAATTTATATAGAGTggaattttgttgttgtt
ttcatGGGGTCCTTAAGCGTTCTTGGTATCGTTGGATTAGGACTCCTTCC
GGAAACGCTTGGTCAAAATTTAAACGATTATTAAATCATCTAACTCTAAG
TATAGTAATACGATTATTTTCAATAGATTATTTAGCCAAAATACCCCAGC
TTCAcctcattttttttcactttaataTTTCCACTATTACAGCCTGATAA
CCTATATGTTCATGAACCCAGCGTCATcaaagccttagttaagcacaACC
ATCGGAC

Coding sequence (CDS) from alignment at scaffold_166:561012..562718

>TCONS_00049850 ID=TCONS_00049850|Name=TCONS_00049850|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_166:561012..562718 (Clytia hemisphaerica)
ATGGCTGATGTCTATGGCCGTAAAAAGACACTTATTGTAGCTGTCACATT
CCAGGTTTATTTTGTGTTGTTATCAGTTGCAAGTGATTCCTATGTGCTAC
ATGTGGTCTTGAGATTTTTGGTAGGAGTTGGTTATGGTGGATGTATTGTA
CTGACTGTTGTCTATAGTACTGAATTCACCAGCAGAAGAAATCATGCTAA
AGCGGTCTTATTTCTGAACGATATATTCATATTTGGCAGTCTTGCAGCAA
TCGGAGTATCATATTTCACATTGACCTTGTATGGTTGGAGGAATTTTATT
CTTTGGTCAATACTGCCGTACATTTTACTGATATGCCTAATGTTGCTGAT
GCCAGAATCCATCCGATTCCTAAGTATAAATGGAGAAACTGATAAAGTAT
CGGACATGTTAGATGAGATTGCAATGACAAGCATTATCACATTGCCAGCG
AATTTCCATGGTGAAGAGATTTCAACAGGTAGACACATAACAAAGGGTCA
AAGTCCAGGTTACTTTACAGTTTTTACAAAACAttggaaaaagattttag
gattaTCAATTAATGGTGTACCCATATTTCTCAGTTTTTATGGTATTCCG
TTCTTTATCGATTATAAAATCCAACACCCAAGTTCTTGTGGATTCAATGA
TGCAACGGTGATGATGAAATGTGCGCCCTTGACCGATTCTCAAATCTTAC
GTTCGTTTTGGATCAATTTTGGCCTGTTACCAGGATCAATAATCGGTTAC
TTTGTTGTTGAAAAGCAAGGTCGTAAAATTCTACTTGGATTTACGACTAT
ATTAATGGCGATATCATATTTCACGCAGTTATTATGTTTACCGTCCGTCA
TGACGTATGTATTGTTGTTTTTATCGTCGGGGTTTGGATCGAGTTCGACg
tgttttcttttcttgttttcCTCAGAATTGTTCCCAACAAATATCAGAAG
TACTGCATCAGGAATATCAGCTACAAtttggaaagttttttcaattttat
cgcCACTATTGTTTCAGCATTTAATTTATATAGAGTggaattttgttgtt
gttttcatGGGGTCCTTAAGCGTTCTTGGTATCGTTGGATTAGGACTCCT
TCCGGAAACGCTTGGTCAAAATTTAAACGATTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031609XLOC_031609Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049850-proteinTCONS_00049850-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049850-exon-scaffold_166-1491911889:561012..562718TCONS_00049850-exon-scaffold_166-1491911889:561012..562718Clytia hemisphaericaexon
TCONS_00049850-exon-scaffold_166-1510915933:561012..562718TCONS_00049850-exon-scaffold_166-1510915933:561012..562718Clytia hemisphaericaexon
TCONS_00049850-exon-scaffold_166-1575043694:561012..562718TCONS_00049850-exon-scaffold_166-1575043694:561012..562718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:561012..562718 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.781552	0.577376	0.214525	0.131174	0.287446	0.151429	0.0608975	0.0855173	0.279406	0.247206	0.191956	0.173503	1.29159	0.899671	0.201723	0.187616	0.817836	1.29383	1.51056	1.13283	2.10666	1.74237	1.11335	1.55533	1.88166	2.76863	0.42217	0.589183	0.184007	0.241038
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
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BLAST of TCONS_00049850 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.182e-23
Identity = 94/382 (24.61%), Postives = 181/382 (47.38%), Query Frame = -2 
Query:  285 PALQCELNLTTFEVTLISITFFIGEALGSWYWGRMADVYGRKKTLIVAVTFQVYFVLLSVASDSYVLHVVLRFLVGVGYGGCIVLTVVYSTEFTSRRNHAKAVLFLNDIFIFGSLAAIGVSYFTLTLYGWRNFILWSXXXXXXXXXXXXXXPESIRFLSINGETDKVSDMLDEIAMTSIITLPANFHGEEISTGRHITKGQSPGYFTVFTKHWKKILGLSINGVPIFLSFYGIPFFIDYKIQHPSSCGFN------DATVMMKCAPLTDSQILRSFWINFGLLPGSIIGYFVVEKQGRKILLGFTTILMAISYFTQLLCLPSVMTYVXXXXXXXXXXXXXXXXXXXXXXXFPTNIRSTASGISATIWKVFSILSPLLFQHLI 1412
            P L CE  L +++V L++   F+G    S  WG ++D YGRK  L ++V + +Y+ +LS  +  Y   +VLR LVG G GG +  +V    EF   +  AK +L +   +  G++  + ++ F +   GWR  ++ S +P +L   L   +PES R+  ++G  +K    L  IA  +   +P      ++   R   +G+    FT   + W  +L   I     F S+YG+        Q    CG +      +A   + C  L++   +   W      PG ++  +++++ GRK  +    ++ +       +C+   +  +LLF++  F S      ++++ E++PT  R+   G  + + +V ++++P + Q ++
Sbjct:  109 PQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGG-VPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLG----KLIISRQEDRGKMRDLFTPHFR-WTTLLLWFIWFSNAF-SYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVML 483
The following BLAST results are available for this feature:
BLAST of TCONS_00049850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOP5.182e-2324.61Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
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