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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049815 ID=TCONS_00049815|Name=TCONS_00049815|organism=Clytia hemisphaerica|type=transcript|length=1647bp
ATTTGATGGATGAATAAGTTGCACTTTACTTGACTAATTTTGAAGTAAAA
TTTCATGCTGGTTTGATTAGAActtaaaaacattgaatttgGAAAAATGT
ATTTGAAATTGAATGATGAAGATTTTTGTCCTCCAGAATCAGATACGAGC
TTTGGGAACAGCAGTTTctcgaaaatgaagaaaacaataGTCTTTCGAAA
ACGaagaaacaataaaagaaacaaCACTGAAGAAAAGGTGAGCGAAGAAA
AAATGGATGACAATATGTTAcgtaaagaagaagaagaacataAGAATCCC
TCAGCTTTTGATGACGATTTTGTGACCGGAAAAATGTCATCATCTTCATC
ATTTGAGGACGGAGTAGAAGAAGCGAAAGAGGTGAATGGCGAAGGAGTGA
ATGGCGAAGGAGTGAATGGCGAAGGAGTGAATGGCGAAGGAGTGATGCGT
TTCAACAACGTAGAAcagaatgaagaagaaaatgatgaagGGAACAGTGA
CGAAAGCACTGGTTTAATATCGCATCCGAAACCGTTGCGGCAAAAGAAGA
CTCTCGCAATGAACAAGGCGGCTGCATTCGTTCGTAATCGTGCCAAAAAT
CTTCGTAAAAAGAATAATTCGGCCgtaatcaaaacaaatgataacatcgt
aaaaaaatcttcaagcGACACAACAGTAAACTCGAGTAGCAATCGAGAAA
AGAACAATTACGACAAATTTAAAGATTTACGATGGAAACAGTCTCGATAT
TTATGGCAAAATGCTCGTAAACGAATGAATTACGTTGTCGGGTTTATTCG
AAAGAAGGATGATGACGAATGCCTGTTAATTGAAGAAAGACAAAAATACG
ATTTTGCGAACTCGAGATTAGAAGTTACGCGTCGCCACAGCTTTTCGGGC
GGTTACGAGAGCACAACTATCGACAGAGATGAAAATTCGAATACAGCTAT
GAACTTCAAGTATCTTTCACCTCAAGGAAAGAAATTGCAAGACTCCCATT
CAAGATTAAGCTCAGCAAAAACTTCACGTCGAAGTTCACTGGATTCGGGA
ATCGGACCAATCAATTCGTTTCTTtcgcaaaaatatttgaaaaagagCCA
ATCAAATTACAGTATGTCTTCAATGGGAGCCAGTACCGATACGCAGCTTG
AAAAGCAACAAGAAAACTTTGAGGAATGTTACTTCCATCCGACTACTACA
AACTTAAAACGCGAAGGAAGTTTTGAATCGGTTGAAAATATGCTTTACGA
TTCAACCGAAAGTGTCCGGTTCGACGAGCACCCGTCCGAGAAAACGGAAC
AAATTATACAACAAGAAGTTGATAATTATTTCAGTCCAATGAACAATTTT
GGTAATGTCCGGAAAAATTCGGAATCTTTCGATTTTCATTCGAATAACAT
TAAACATGCGTCATCTTTCTCATACAGTGTAAATGACTTATACGATCTcc
taaacaaagaaaacaaattgAAGAACTTTGAGGCTCATTTTGATGACCTT
GTTGtataaacattttttcattcagtctacaatttattttcatttttgtt
agtATATACATAAGAGTTTACATTAGGATtttgtttttccaatttttttt
tgaagtccATTTTTTAAATACATTAATATATCTAGCATTCTAAAATT Run BLAST on NCBI transcript from alignment at scaffold_166:562911..570485- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049815 ID=TCONS_00049815|Name=TCONS_00049815|organism=Clytia hemisphaerica|type=transcript|length=7575bp|location=Sequence derived from alignment at scaffold_166:562911..570485- (Clytia hemisphaerica)
ATTTGATGGATGAATAAGTTGCACTTTACTTGACTAATTTTGAAGTAAAA
TTTCATGCTGGTTTGATTAGAACTTAAAAACATTGAATTTGGAAAAATGT
ATTTGAAATTGAATGATGAAGATTTTTGTCCTCCAGAATCAGGTAATAAC
TGTACTATGTTTTGTTTCTATACGTTATTCGGACAAACGTAACGCAGCAA
GCCAGGTTATTTGCTGGTTATTTGACTATATTTTGTTACTTTTTCAATCG
TTTGAGAATTTTTTTGTTTTCGAGTACAAATTTCTAACCCAACAGGAAGT
AACTAATACGAAAAGATATTAACATGTAATAGTGGCCCAAGCAATAGTTA
CTTAGTTTTATCAATTTACTTTCTATCATCAATCATCACGTTTAGGAAGT
GGGGCGTATGAGGGTCCTGGACACCGAAATACCGACAGTTTTCACAAAAT
CACCGCAATACCGACACACCGACATTTTTTCATGTTTTTTTCCTTCAAAA
TTCTAATATGAGATAAGATGATAAGAGGGATTTCTGAGAAATAGCCCTTG
ATTTAGCACCGTTTCTCCGACTTTTAAGCAAAATTACCGTATAACCGTAT
CATCTCAAACACCTAAATACGGACACATTTTTTGTTGATCACCGAAAAAC
CGACGCAAAAAAAGACACACCGACAAACTGGTACATCTCCCCAGTTTGAA
CTTTCAAGATGTTGTTTCGCAATTTTTTATTTTTCGATACATATAATTCT
CAGAGAGCATAACTTATATTCAACTTTCTTTCTGTATAGTGAAAGTAACA
AACATGGCATCCTCCCCCCCCCAATATTTTGCAAAGTATTTTTTTTTTAC
TTTAAAAAATCGGATCCAAAAAATCTTATATATACCGTTTAGAGGGGTGA
AATAAGGGTGATAAGTCGAAAATTTTCTTCGTCGCCCAACCATAATGGGC
GACATATTTTTTGGCCCCCTCAATTCGATTCGCACCCCGGGGGCCATGTT
ATATTCAAGTTTCTTACTATAGTGAAAGTAACAGTTGCAGCAAACATAAG
GATTTAATTATTTCAACATGATTTCAAAATAAGAGATTTTTCAACCTACG
TACCATCTTGTGTCAAAGATTACTTAAAAGCATTATAAACAGGCCTACGA
CAATTTAAAGCCCTTTTCCCACCTTTTGGACTTTCTTTTTATCAATACTT
TGCCATCTTAAAATCAGTATCTCGGCTAATGTAGGCTGCACGCATCCCCT
CGGATATGTTTTGATATAGGCATGGATTTAATATAGAGGCTCATGAAATC
TATGATAAAGGGGTATGCTCGTCGTGTATAAAACTATCGTCCGAGAGTTA
CCCCCGCCCCGTCTTTGTGTTTCTGAGATTTTATAAACTTGTAGCTTGAT
TATTAGTTTTGTATGAGTAATATTTAAATTGAACAATTGAATTTCAATTA
AACATTTGAAAGAAAAACAAGAGCCGCAAAGATGCGGATAAATATTTCCT
TTACAAATGTTAAAATAATAATTAATGTCCTCAAAAGATTTCAAAGTGCT
TTAAATCTCAGATAACATCAAGCAACACAAGTCCCTAAGAATTTCAAAAT
TCCATTTATGTTATTGACAGTATTTCATAAGATGACTGTAGATTCAAAGC
TACGGATCACGGAATATATCCAACCAAGCTGAACCCGACTGAGAACAACA
ATACAGTAATCAAATTGGCTGGAACTTTAATTTTCGTTGGGTGGACTTTA
AATAGATTTTAGTATTATGTATTATTAGTATTATATGGCGTCGCACCGCC
AAGTAGAGTGTTGTTGAACACATCAAAAGACCTGATTATATAATTATTTC
ATTAAGCTCTGATTTCCAGAAATATTATATAGCCAAAAAGGGCAAATATT
TAAAATGAAAGAATGACAAAAAGGAGAATATTTCACAGTAAAAAAGAAAA
CCAAAGAAAATTTTATATATTTTCAAAATGAGATGAAATATTTTGCATTA
CAGTATACTTTCACATATAAAATATTGTAAAAAATGTAAAAATTTAAAGT
AACTTTTGGAGTTTTTTTAAATAATGTACGTGCTAAAAAGTAAAAAACTT
ACAAAACAGGGAAACAATTTCATATTTTCCGACAGAATGCAAAAAAAAAA
AATTTTCAAAAAAATGTCAGAAAATAAAATAAATTGTCATGCCAGGATCA
CTTGAGTTTTCTTCATTTTTTAAATGCATGTGGAAGAAAATGTCAAGTTC
ACGACAAAAGTTTTCCACGTTTTGAATGCACGTGTAAGAAAATCTCCAAA
TTTATCACAAAAGTTTCCACGTTTTAAATGTACATACTGTCAACTGCTTT
ACTTGGGACGATTGGTCGAAACATGGGACTGTTTGATATCTGGTCTGTAT
TTTCACTACAGTAACTTGTTAAATCTCTTGGACAACAAATTTGTTTTGAT
AACTCGACCAAGTTTATCAATCATACTTCCTTTCATAACATGTCACGATA
ACTTTCACTGATACAGTAGGGACAATTGGAGAATTAGAGAACGCCCGCTG
CCTAACCGCCTATCGCCCGATGGGGTTAACAAATAACGCGTGTGTAACTT
GCCGCCCGAATGACGTCAAACGCTCCATCGTTTTGCCATTTTTTTAATAC
GCCATTCATTAACTCAAATCAAATGACTTTGGAGGTTTGGTGAAATGGTG
GCCAAATTGCTGTCCCATGTTTTGTCAGATAGTCCCAAGGTGGAGCAGTT
GACGGTAAGAAAATCTCCTAATTCACGAGAAAAGTTTCCACGTTTAAAAC
ACACGTTGCAAAAGATCTCTAAATTCACAACTAAAGTTTTCCACGTTTTA
AAATGCACGCGGGGAAGAAAATCTCCAAGTTCAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCT
CCATGTTTAAATTTTTACCTAAAATCAGTTCATCAACCATTCCCATTGTT
TCATTGTCGGCTTGCATTCGTTGGGTGCAAACTTTTTTCATATTGCAAAC
AGTATGTAATTTTTCAGGTATAACATGGTCAGATTTATTCACAGTCACTT
GCCTGCGTACGATTTATGTAAATATACAAACAAAATTGAAGTTAGTTTGT
TGTGAAAGTTGATAAAATGTCCTGTTTTTCCAAGACCAAGGCAAGAGATT
GTAGTATCATCTCTCATTCCAGCTCATTCCAAACCAACAGAATGTAAACG
AAACATCAAATCCAAAAAGTAATATTAAGAAAAGTTCACTATCGACCATT
TCTTGTGACAATCGTACAAAAATCATGATCCAATTCAACTCATCAAAGCA
CATAAACCAAAGCAAAGAAAAGTAGCGAAAGAGTAAAAGTTGTTGTCTAT
TTTCTGCCATCTTTGTTTTGACAGTTAGAAACAAAGCAGTATGGTCCGAT
CAACAATACGCTTCTAAAACGGCCGACGTTTCCCGATCGACAAGGAGAAT
AGAGCGCCGTACGGATATTTACCACAGACGTTTCTCGAAGAAATGACGTC
TCCCGCCTCAAAAAAAGAACATCCTACTGTTTTTACCGCCGGAGCTTGAT
TTAAAAAGAGACTCATGTACAAACTCACGAAATTGATCAAAACCGAGCGT
TAGACTTGGAGAAGAAGGAGAAGAAGGAGAAGAAATTTTACCGTTTTAAC
AAATATTTCCTATATAGATAGGAAATATTTAAAAAATTAGATAACACAAT
GGTTGAATTTCTAGCCCTTTTTAAGAAACTTGAGGTTACCTCGTATTTTG
GTAGCTCTCAGGCGAGAGTTTTATACACGATAAGCATCCTCCGGGGTTAG
TACTTGGGAAAAAAAAGGGGCACGGGGATGTGCCTCTGGTCAAGGTACCT
TCTTTCACCTCCATAAGTCCCAGGTAGGGCCGCAAAAAACACCAAAAAAG
AAAAAAAAACAGTGCTCTCAGGGTGTAACTATTTTCGGTAATTCGGGAAA
AGTATGGCAGACATTTTTTGTCAAAAGGTGGAAAATTTTGAGAAAATTTT
GGAATTTCAGTCCCAGGGATGCATTCAGCCTACTCTCGGGTACCTGATAA
GTTGTCCCCCGCTTAATTTCTCAAAAGTTTTTCACGCAGGACATTCTTAT
TCCACCCCCCCCGTTTATTAAGTTTTGAGATTTTTCCAACCCTCCTGCTT
ATCCCAACCCCAGCTATTAGGTATCCAAGAGTAGGGCTAATGGTTGATAT
TTTCCCATAAGTAGACAAACAGTAAAGATTCTCAAAACTTTATTAGCTAG
TGTTTGTGTGCGAGTCCAGAAACTGCCTTTCTCATCAAAGCCTCCCCTTC
AAAGATACACCCGTGTGTCACAGACCGGAATATTTGGTCAAACTTTCGTA
CCCGATGGGAAAAATACCCTACAATTTCAGCCCCTGTGAGAAATTGACTT
TGATTTCATCTCCATTTGAAACTTAATGTTAAAGAATTGCACTCAGCCGA
AACCATTGGATTTTCTGAGCTTGGAACAGTAGAATTTTTATATTCATTGG
AATTTCGATAAAAGTTTTTCGCGCTGTATGAAAAAATACCACCGGGGCTG
TGAGACAGGGTGTAAGATCTAGAATGTCAACTTTTCATTCTGTAAATTAT
ACACGCTTTTTTTTTATTATAAGAATACACTTTATAAGAATGTCCATGAT
GAAAATGGTCAAAAAATTAAGAATAATGCTAAGAATATCACCATCATGGA
ATTTTGCTACTCAAGCTAAGAATGCCATTTTTAGAGCATTTTTTATTAAA
TTGTCAATTACCCCCAGTAAGCTAATATTTTAGGATGATTTTCCCAAAAA
AGTTAAGAATATCCATGATGAAATGAATTTACACCATTCTTTCAAAAAAA
AGCGTGTATGTATGGGCAAGGACTAATCCATATTATGTTTTGTCGGCGGT
GAACAATGATGAAAATCAAACCAGGTTTCAAAGTCAGATACATAGGGGAA
GAAAAAAGGGGAAAATCAACCTACTCGCATTTAAAGCCTTTGGAGTACTT
TTATCTTCATGTTTTTCCCGTCAAGAAAAAAAATGTCATGAATTATTGAG
GTGAAATACAGAGGCGAAAAACTGCTAATGTAGAGGGGGCGGGTTGAATA
ATGTTTTTCACTCGCAGATTCAGTCAGATATAAAAGAAGGCTGCAAGGGA
CGTATTATCACTAATACAAAAGTGACTTTTAGAGGTCTTAGTTCTTATTG
TGGAAGTAGACTAAAATTTTTGAGAAGAGGTGAAAATCTAATACATTAAG
TTAAATAAGTTCGGCTCTTAATAGATAGTTTAGCAAGGTCAAACTCTACA
CCACCTTTTCTTGTTAGGATCGAATAAAATTCATGCACTCAGCAAAAAAA
TTAATTTGTCACCGCGCGATTCCTATATTTAGGTCGGGATAAATCGTGTT
GAAAACTAAATTGAATGTTATCTTTTCAACGGGGATTTTCTAGTATATCA
TAACTATAGGTTTTAACAATAGTCGTATCTCCTTATAATCTAAATCTTAA
TCTAGAAATCTTTATTCTTTACTTTTTACACTTTAGATACGAGCTTTGGG
AACAGCAGTTTCTCGAAAATGAAGAAAACAATAGTCTTTCGAAAACGAAG
AAACAATAAAAGAAACAACACTGAAGAAAAGGTGAGCGAAGAAAAAATGG
ATGACAATATGTTACGTAAAGAAGAAGAAGAACATAAGAATCCCTCAGCT
TTTGATGACGATTTTGTGACCGGAAAAATGTCATCATCTTCATCATTTGA
GGACGGAGTAGAAGAAGCGAAAGAGGTGAATGGCGAAGGAGTGAATGGCG
AAGGAGTGAATGGCGAAGGAGTGAATGGCGAAGGAGTGATGCGTTTCAAC
AACGTAGAACAGAATGAAGAAGAAAATGATGAAGGGAACAGGTAAGAAAC
TAATACACTCTGCAATTGATTACACTTTTTGTATAAGAATCAATAAATTT
TTTGTTCTATAAACTTCGAGTGACTTCAAAATGTTCTTTACGAGCTAATT
CAAAAGACCCAGCTTTATGTTCTTAATATTTTTTCTTTTTTAAGGCTTCA
TTCTTCTTATGAATTATTAGAAAATCAGAAAATTACGAAGTAATGTAAGG
TGGTGAGACCAAGTTCTCCACCTATATCAAAACTCTCGTCAATTCATTTA
TTTTGTAACTTTTGTTCGCTTTTAGTGACGAAAGCACTGGTTTAATATCG
CATCCGAAACCGTTGCGGCAAAAGAAGACTCTCGCAATGAACAAGGCGGC
TGCATTCGTTCGTAATCGTGCCAAAAATCTTCGTAAAAAGAATAATTCGG
CCGTAATCAAAACAAATGATAACATCGTAAAAAAATCTTCAAGCGACACA
ACAGTAAACTCGAGTAGCAATCGAGAAAAGAACAATTACGACAAATTTAA
AGATTTACGATGGAAACAGTCTCGATATTTATGGCAAAATGCTCGTAAAC
GAATGAATTACGTTGTCGGGTTTATTCGAAAGAAGGATGATGACGAATGC
CTGTTAATTGAAGAAAGACAAAAATACGATTTTGCGAACTCGAGATTAGA
AGTTACGCGTCGCCACAGCTTTTCGGGCGGTTACGAGAGCACAACTATCG
ACAGAGATGAAAATTCGAATACAGCTATGAACTTCAAGTATCTTTCACCT
CAAGGAAAGAAATTGCAAGACTCCCATTCAAGATTAAGCTCAGCAAAAAC
TTCACGTCGAAGTTCACTGGATTCGGGAATCGGACCAATCAATTCGTTTC
TTTCGCAAAAATATTTGAAAAAGAGCCAATCAAATTACAGTATGTCTTCA
ATGGGAGCCAGTACCGATACGCAGCTTGAAAAGCAACAAGAAAACTTTGA
GGAATGTTACTTCCATCCGACTACTACAAACTTAAAACGCGAAGGAAGTT
TTGAATCGGTTGAAAATATGCTTTACGATTCAACCGAAAGTGTCCGGTTC
GACGAGCACCCGTCCGAGAAAACGGAACAAATTATACAACAAGAAGTTGA
TAATTATTTCAGTCCAATGAACAATTTTGGTAATGTCCGGAAAAATTCGG
AATCTTTCGATTTTCATTCGAATAACATTAAACATGCGTCATCTTTCTCA
TACAGTGTAAATGACTTATACGATCTCCTAAACAAAGAAAACAAATTGAA
GAACTTTGAGGCTCATTTTGATGACCTTGTTGTATAAACATTTTTTCATT
CAGTCTACAATTTATTTTCATTTTTGTTAGTATATACATAAGAGTTTACA
TTAGGATTTTGTTTTTCCAATTTTTTTTTGAAGTCCATTTTTTAAATACA
TTAATATATCTAGCATTCTAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049815-exon-scaffold_166-1575043694:570344..570485 | TCONS_00049815-exon-scaffold_166-1575043694:570344..570485 | Clytia hemisphaerica | exon |
| TCONS_00049815-exon-scaffold_166-1575043694:564345..564699 | TCONS_00049815-exon-scaffold_166-1575043694:564345..564699 | Clytia hemisphaerica | exon |
| TCONS_00049815-exon-scaffold_166-1575043694:562911..564060 | TCONS_00049815-exon-scaffold_166-1575043694:562911..564060 | Clytia hemisphaerica | exon |
| TCONS_00049815-exon-scaffold_166-1510915933:570344..570485 | TCONS_00049815-exon-scaffold_166-1510915933:570344..570485 | Clytia hemisphaerica | exon |
| TCONS_00049815-exon-scaffold_166-1510915933:564345..564699 | TCONS_00049815-exon-scaffold_166-1510915933:564345..564699 | Clytia hemisphaerica | exon |
| TCONS_00049815-exon-scaffold_166-1510915933:562911..564060 | TCONS_00049815-exon-scaffold_166-1510915933:562911..564060 | Clytia hemisphaerica | exon |
| TCONS_00049815-exon-scaffold_166-1491911889:570344..570485 | TCONS_00049815-exon-scaffold_166-1491911889:570344..570485 | Clytia hemisphaerica | exon |
| TCONS_00049815-exon-scaffold_166-1491911889:564345..564699 | TCONS_00049815-exon-scaffold_166-1491911889:564345..564699 | Clytia hemisphaerica | exon |
| TCONS_00049815-exon-scaffold_166-1491911889:562911..564060 | TCONS_00049815-exon-scaffold_166-1491911889:562911..564060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:562911..570485 - |
Blast
The following BLAST results are available for this feature:
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