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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049817 ID=TCONS_00049817|Name=TCONS_00049817|organism=Clytia hemisphaerica|type=transcript|length=1028bp
CAgagacaaaaataaataaaaataccaAGCAACAACCCACATCAAGATAG
AGAATGGTTAACGCTGAAGAAGTGAGACATACTGGTGGTTGCCATTGCGG
CGCTGTGCGTTATGAAATGTACGCTCCAAGGATCCTGAATTGTGTGCGTT
GCAATTGTTCAATTTGTGTCAAAAAACAACACCTTATGTACGTCCCTGCT
AACAAATTCAAACTAATCCAAGGTGAAGAAAACATAACAACATACACGTA
TAATACACATCAAGCCAAACAtaaattctgtaaaatttgCGGTATTCATA
GTTTTTACATGCCAAGAGCGTACCCAGGGAGATATGGAGTAATGGTACAT
TGTTTGGACCCTGGAACCGTGGATGAAATGTTGATCGAAGAATTTGATGG
AGTCAATTATGAAACATCATTAAaagcagccaatgaaattaaacaatgaa
ttttgaagaatttgaaaaaatgaaacctTTTATAAAAGTAGTTCGTTACA
TTTTCTGGAAGCGCCAACAATGCTGAAATCAAACAATGATACACAATGAT
ctgaacgttagatgaatggAGACTCAAAGCTTATGAAATAATACTTACCT
TGGTCGCAACCTAACCAGCATCTACTAACAAACATAGCGCAAAGTTACCT
TTtgccatagtccgtataaaaatcCCTGGTGTGGAATCTTTTTGTATCTT
TCCATTGTTATTTACTTGAGCTTGcgtttttttgttcactttttgatcat
gtgattaaatcttaaaccaatcctaagaggagtacttggtaacAATCTTC
CAGACTAGGGTTTTTATAAGGACTATGCTTTTACTTAAAACTAACACTCT
TTCTTACAAATTAATATTCATCTACTGTCATGACTTTGTTTAGAatctct
attgttttcaaaataaagtaaagatttcAGGCAATAAACATTCTTAAGTT
TCTTATACTCTTCAAACTAGGATAAATTCTAACTTAGACCAAAGTTGGAC
GTGCgaatcgaattgagggggccagAAA Run BLAST on NCBI protein sequence of TCONS_00049817-protein >TCONS_00049817-protein ID=TCONS_00049817-protein|Name=TCONS_00049817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MVNAEEVRHTGGCHCGAVRYEMYAPRILNCVRCNCSICVKKQHLMYVPAN
KFKLIQGEENITTYTYNTHQAKHKFCKICGIHSFYMPRAYPGRYGVMVHC
LDPGTVDEMLIEEFDGVNYETSLKAANEIKQ Run BLAST on NCBI transcript from alignment at scaffold_166:583510..585316- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049817 ID=TCONS_00049817|Name=TCONS_00049817|organism=Clytia hemisphaerica|type=transcript|length=1807bp|location=Sequence derived from alignment at scaffold_166:583510..585316- (Clytia hemisphaerica)
CAGAGACAAAAATAAATAAAAATACCAAGCAACAACCCACATCAAGATAG
AGAATGGTTAACGCTGAAGAAGTGAGACATACTGGTGGTTGCCATTGCGG
CGCTGTGCGTTATGAAATGTACGCTCCAAGGTAATCCCAAATAAATCTTG
ACCCCTCTTTATTAAGACGATAGGAAGCATGTGGCCTTTTACAATGGAGC
TGAGTCAAAATCGTAGGTATGCAAAACTGCTGGTATATAATGAGACGCAC
GGAGCCTCATCATGGAAATTGACCTAAACAATAAATGACTTAAATATCTT
ATGTCCGCTTTAGTTTTTTATGGGAAAAATGTAATTATGTGCGGAAAGTG
TCCGTTTTATAGAGTATCCGTTTTATAAGTGTACAAGCTTTTTTTATATA
CTTTTTGAATATACTTTATAAGAATGTTCTTGTTAAAAATGGCCAAAAAA
ATTAAGAATATGCTAAGAATATCACCATCATGGAATTTCGCAAACAACCC
TAAGCATGGTATTTAAAGAACAATCTTAACTTTAAATTACTAATTATCCC
AAAGTAAGATTTTACCTTCACGAAAATGCCATTTTATGCTTCAGATGTGT
ATTTCTTGTTAAATTTAGTTTGATCCTAAAACATTCCATTCCAAAGAAAA
TTGTTCGTCTTACAGAAATGTCCGCTTTATTTATACCATGTCCACTTTTG
ACAGACTCAACTGTATTCATGATTTTCATGACGTAATATTTTCTACGGAA
ATACCTCGGTTTTTAGCCATTAATGGCAAATTTAAACTAGACAAAAATTT
TCCACAACTGGCAAAAACTGGGGTCTTTCCGTGGAAACATTACGTCATGA
ATATCCTGAATATTTTTCATGGGATTTTAAACTCAATTTTAACTTATTTT
ATCATTCAGGATCCTGAATTGTGTGCGTTGCAATTGTTCAATTTGTGTCA
AAAAACAACACCTTATGTACGTCCCTGCTAACAAATTCAAACTAATCCAA
GGTGAAGAAAACATAACAACATACACGTATAATACACATCAAGCCAAACA
TAAATTCTGTAAAATTTGCGGTATTCATAGTTTTTACATGCCAAGAGCGT
ACCCAGGGAGATATGGAGTAATGGTACATTGTTTGGACCCTGGAACCGTG
GATGAAATGTTGATCGAAGAATTTGATGGAGTCAATTATGAAACATCATT
AAAAGCAGCCAATGAAATTAAACAATGAATTTTGAAGAATTTGAAAAAAT
GAAACCTTTTATAAAAGTAGTTCGTTACATTTTCTGGAAGCGCCAACAAT
GCTGAAATCAAACAATGATACACAATGATCTGAACGTTAGATGAATGGAG
ACTCAAAGCTTATGAAATAATACTTACCTTGGTCGCAACCTAACCAGCAT
CTACTAACAAACATAGCGCAAAGTTACCTTTTGCCATAGTCCGTATAAAA
ATCCCTGGTGTGGAATCTTTTTGTATCTTTCCATTGTTATTTACTTGAGC
TTGCGTTTTTTTGTTCACTTTTTGATCATGTGATTAAATCTTAAACCAAT
CCTAAGAGGAGTACTTGGTAACAATCTTCCAGACTAGGGTTTTTATAAGG
ACTATGCTTTTACTTAAAACTAACACTCTTTCTTACAAATTAATATTCAT
CTACTGTCATGACTTTGTTTAGAATCTCTATTGTTTTCAAAATAAAGTAA
AGATTTCAGGCAATAAACATTCTTAAGTTTCTTATACTCTTCAAACTAGG
ATAAATTCTAACTTAGACCAAAGTTGGACGTGCGAATCGAATTGAGGGGG
CCAGAAA Coding sequence (CDS) from alignment at scaffold_166:583510..585316- >TCONS_00049817 ID=TCONS_00049817|Name=TCONS_00049817|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_166:583510..585316- (Clytia hemisphaerica)
GATCCTGAATTGTGTGCGTTGCAATTGTTCAATTTGTGTCAAAAAACAAC
ACCTTATGTACGTCCCTGCTAACAAATTCAAACTAATCCAAGGTGAAGAA
AACATAACAACATACACGTATAATACACATCAAGCCAAACATAAATTCTG
TAAAATTTGCGGTATTCATAGTTTTTACATGCCAAGAGCGTACCCAGGGA
GATATGGAGTAATGGTACATTGTTTGGACCCTGGAACCGTGGATGAAATG
TTGATCGAAGAATTTGATGGAGTCAATTATGAAACATCATTAAAAGCAGC
CAATGAAATTAAACAATGAATGGTTAACGCTGAAGAAGTGAGACATACTG
GTGGTTGCCATTGCGGCGCTGTGCGTTATGAAATGTACGCTCCAAGGATC
CTGAATTGTGTGCGTTGCAATTGTTCAATTTGTGTCAAAAAACAACACCT
TATGTACGTCCCTGCTAACAAATTCAAACTAATCCAAGGTGAAGAAAACA
TAACAACATACACGTATAATACACATCAAGCCAAACATAAATTCTGTAAA
ATTTGCGGTATTCATAGTTTTTACATGCCAAGAGCGTACCCAGGGAGATA
TGGAGTAATGGTACATTGTTTGGACCCTGGAACCGTGGATGAAATGTTGA
TCGAAGAATTTGATGGAGTCAATTATGAAACATCATTAAAAGCAGCCAAT
GAAATTAAACAATGAATGGTTAACGCTGAAGAAGTGAGACATACTGGTGG
TTGCCATTGCGGCGCTGTGCGTTATGAAATGTACGCTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049817-exon-scaffold_166-1575043694:585187..585316 | TCONS_00049817-exon-scaffold_166-1575043694:585187..585316 | Clytia hemisphaerica | exon |
| TCONS_00049817-exon-scaffold_166-1575043694:583510..584407 | TCONS_00049817-exon-scaffold_166-1575043694:583510..584407 | Clytia hemisphaerica | exon |
| TCONS_00049817-exon-scaffold_166-1510915933:585187..585316 | TCONS_00049817-exon-scaffold_166-1510915933:585187..585316 | Clytia hemisphaerica | exon |
| TCONS_00049817-exon-scaffold_166-1510915933:583510..584407 | TCONS_00049817-exon-scaffold_166-1510915933:583510..584407 | Clytia hemisphaerica | exon |
| TCONS_00049817-exon-scaffold_166-1491911889:585187..585316 | TCONS_00049817-exon-scaffold_166-1491911889:585187..585316 | Clytia hemisphaerica | exon |
| TCONS_00049817-exon-scaffold_166-1491911889:583510..584407 | TCONS_00049817-exon-scaffold_166-1491911889:583510..584407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:583510..585316 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016846 | carbon-sulfur lyase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0016846 |
carbon-sulfur lyase activity |
Blast
BLAST of TCONS_00049817 vs. Swiss-Prot (Human)
Match: CENPV (Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.246e-46 Identity = 71/125 (56.80%), Postives = 96/125 (76.80%), Query Frame = 3
Query: 72 VRHTGGCHCGAVRYEMYAPRILNCVRCNCSICVKKQHLMY-VPANKFKLIQGEENITTYTYNTHQAKHKFCKICGIHSFYMPRAYPGRYGVMVHCLDPGTVDEMLIEEFDGVNYETSLKAANEIK 443
V+HTGGCHCGAVR+E++A L+ CNCSIC KKQ+ + VPA++FKL++G E+ITTYT+NTH+A+H FCK CG+ SFY PR+ PG +G+ HCLD GTV M+ EEF+G ++E ++K IK
Sbjct: 146 VKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEHITTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSMVTEEFNGSDWEKAMKEHKTIK 270
The following BLAST results are available for this feature:
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