TCONS_00049819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049819
Unique NameTCONS_00049819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2017

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049819 ID=TCONS_00049819|Name=TCONS_00049819|organism=Clytia hemisphaerica|type=transcript|length=2017bp
caaaaataCAATTATTTGACAAATCCTTGGACGTAACGCTTGGTTTAAAG
AAAATACTTCAGGTTACAAGTTAAATAAAAATGCTATCAGTTAAAATGCT
CAAATTTccatacaaaaaaaaatgttcacttatgtgtgtttcttaaaaat
agTTCAACCagattttggtgtttttgcacGAGCTTGTTGTTTgggttttt
ttaatttcttgataTTACAATTTGCACCATCGCCCGACGCATGCTCACAG
ATCTTTTCATTCCCAAATTGATCAGTCACCAGCACTTGTAGCGTGTCAGT
ATCGGGAAACTCCCACGTTCCAAAAGCAAACATATCTCGATTACGACCTG
ATAGGACGGTTGTAACATCTTGGTGACCAGAATTATCACCATTGCTCCAT
TTCAATTCATAGGTACCCAACAAGCGGAAGGTTCCTTTCCACTTATAAAC
AACGTCGATTTTCTTACGCATTAAATCAATAGTGATTTGCCTACCTGGTT
TAACTTCGACTGCAACTTCAGTACTATCGGATGTCTCAGTACTCTTGGTT
TCACTGCGCTCTGAACTGAATGAAAACGATGTCGATACTTCGGCTGAAAA
CTCAACTGATGCTTTTTGACCAAAGAAGGATGAGTCATACCCAGCAGTGT
AGCCAAGTGTGAGCCCAACATCAAAACCAGTTCCAATGGTAAGAGTTTTC
TCAACAGCGATGGTCACTGATAAGGATTTGGTGCAGGTGTATTTGACGTT
CGATTGGAAGCATTGGACAGGGCGAAAGTCTTTGACTCGTTCTGGTTTAG
CGGTTGTTGGTTCAGTTTTATCCTCAACAATGAAAGACACTGGACGCAAT
TTTAATGCTTCTTCTGGTTCTGCTATGTTCTTGCATGAATAAGATTCACT
CTCTGGTGTCTCATCTTTGGCATCCATTGAACATTCTTTGTAGCCTCCAG
ACGATCGTTTGGTCTTGATTACAAGTGAAGGATTATCGATGAAAGAATTT
CCATTGTAAGGACCCATCTGGCAACATTTGAATTCCTCGATACATCCCAA
TCTTTCACAGCTATTACGATACAGGCCGGAAATGAAATAACCAGCATTGC
ACTTAGTCCATCCTTTGCGATCAAGTGAAGCATGAGCATCATGGTTATAG
CATCTTCCCCATTGTTCGCCTTGTGATTTTGGCTTGCAGCAATAGAATTC
TTCCAAATTCTCAAGACCAGCGCCAGGAGAGGTGTAGACGCCGGAAATGT
AGTAACCAGCTCTACAGCTGTGCCATCCTTTATTGTTAAACTTTTTATGT
AGATTCAAAGCGTAGCAATCAGCTTCACCACGCATCGGATGTAATTCTCT
AGGTGCTGTTTTACATTCTCCTTCTTCAAGACGGCCGAGTCTTTCATCCC
ACCAAACATGTGGACTTCTATAGACACCAGTTAGAAAATGTCCAGCTTGA
CACTTTGACCAGCCTCCGTTGTCAATAGAATTCCACCAGTTAGCTCGTTG
CGTATTCTGTTCTTGCTCATGAATATATTGATTTTGCATGTGGTTCCTAT
AAGCCTCGTTAGTTCGCCATAGCAACGCCAAACGTCTCAAGACTTGCTTA
GCAACATCGATGTCTCCAACAACAGAGACGGAGTAGGCATTCTCACCACC
GCAACATGATTGAGCATTATAACATTGGGTATACGATCGACATTTGGTGC
GACATTCTGTATCATTAACCAAATGACCTTTAGGATACACATTCCCACAA
AGACATCTAGAACCTTGGGTAGCTGCTAAAATGTAACCAACATCTTGGCA
GATTCGTTGACACCTTGCATTAGAGCTTTCTCTTCCCATATCGGTTTCTT
TTCCAGAGTCAGGAAATGTATTGAAACATCCTTCAATTTTGTACGACTCT
ACGGTCTTTTTCGATGGTTCTTTTACTTCAAATTCATTGGTGGTGTTGTT
AATGGGAACAGCGAATGTAGTTCTGAATACCACCACGATAATAAAGATTG
ATAAGGGCAATGCCATG
Run BLAST on NCBI

transcript from alignment at scaffold_166:603343..609007-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049819 ID=TCONS_00049819|Name=TCONS_00049819|organism=Clytia hemisphaerica|type=transcript|length=5665bp|location=Sequence derived from alignment at scaffold_166:603343..609007- (Clytia hemisphaerica)
CAAAAATACAATTATTTGACAAATCCTTGGACGTAACGCTTGGTTTAAAG
AAAATACTTCAGGTTACAAGTTAAATAAAAATGCTATCAGTTAAAATGCT
CAAATTTCCATACAAAAAAAAATGTTCACTTATGTGTGTTTCTTAAAAAT
AGTTCAACCAGATTTTGGTGTTTTTGCACGAGCTTGTTGTTTGGGTTTTT
TTAATTTCTTGATATTACAATTTGCACCATCGCCCGACGCATGCTCACAG
ATCTTTTCATTCCCAAATTGATCAGTCACCAGCACTTGTAGCGTGTCAGT
ATCGGGAAACTCCCACGTTCCAAAAGCAAACATATCTCGATTACGACCTG
ATAGGACGGTTGTAACATCTTGGTGACCAGAATTATCACCATTGCTCCAT
TTCAATTCATAGGTACCCAACAAGCGGAAGGTTCCTTTCCACTTATAAAC
AACGTCGATTTTCTTACGCATTAAATCAATAGTGATTTGCCTACCTGGTT
TAACTTCGACTGCAACTTCAGTACTATCGGATGTCTCAGTACTCTTGGTT
TCACTGCGCTCTGAACTGAATGAAAACGATGTCGATACTTCGGCTGAAAA
CTCAACTGATGCTTTTTGACCAAAGAAGGTTGATTCATATCCAGCAGTGT
AGCCAAGTGTGAGCCCAACATCAAAACCAGTTCCAATGGTAAGAGTTTTC
TCAACAGCGATGGTCACTGATAAGGATTTGGTGCAGGTGTATTTGACGTT
CGATTGGAAGCATTGGACAGGGCGAAAGTCTTTGACTCGTTCTGGTTTGG
CGGTTGTTGGTTCAGTTTTATCCTCAACAATGAAAGACACTGGACGCAAT
TTTAATGCTTCTTCTGGTTCTGCTATGTTCTTGCATGAATAAGATTCACT
CTCTGGTGTCTCATCTTTAGCATTCATTGAACATTCTTTGTAGCCTCCAG
ACGATCGTTTGGTCTTGATTACAAGTGATGGATTATCGATGAAAGAATTT
CCATTGTAAGGACCCATCTGGCAACATTTGAATTCCTCAATACATCCCAA
TCTTTCACAGCTATTACGATACAGGCCGGAAATGAAATAACCAGCATTGC
ACTTAGTCCATCCTTTGCGATCAAGTGAAGCATGAGCATCATGGTTATAN
TTGACCAAAGAAGGATGAGTCATACCCAGCAGTGTAGCCAAGTGTGAGCC
CAACATCAAAACCAGTTCCAATGGTAAGAGTTTTCTCAACAGCGATGGTC
ACTGATAAGGATTTGGTGCAGGTGTATTTGACGTTCGATTGGAAGCATTG
GACAGGGCGAAAGTCTTTGACTCGTTCTGGTTTGGCGGTTGTTGGTTCAG
TTTTATCCTCAACAATGAAAGACACTGGACGCAATTTTAATGCTTCTTCT
GGTTCTGCTATGTTCTTGCATGAATAAGATTCACTCTCTGGTGTCTCATC
TTTAGCATTCATTGAACATTCTTTGTAGCCTCCAGACGATCGTTTGGTCT
TGATTACAAGTGATGGATTATCGATGAAAGAATTTCCATTGTAAGGACCC
ATCTGGCAACATTTGAATTCCTCAATACATCCCAATCTTTCACAGCTACT
ACGATACAAACCAGAGATGAAATAACCAGCATTGCACTTGACCCATCCTT
TGCGATCAAGTGAATCCCAAGCATTATGGTTATAACATCTTCCCCAGTGT
TCACCTTGTGATCTTGGCTTGCAGCAATAGAATTCTTCCAAATTTTTAAG
ACCATAGCCAGAAGTGGTGTAGACGCCGGAAATGTAGTAACCAGCTCTAC
AGCTCTGCCATCCTTTATTGTCAAACTCGTTCCATAGATTCAAAGTGTAG
CAATCGGCTTCCCCACGCATCGGATGTAATTCTCTAGGTGCTGTTTTACA
CTCTCCTGATTCAAGACGGCCGAGTCTTTCATCAAAATAATTATATTGGC
TTCTATAAACACCAGTTAGAAAATGTCCAGCTTCACACTTTGACCAGCCT
CCGTTGTCAATAGAAGACCACCAGTTAGCTTGATGCGTATTTTGTTCTTG
CTCATGAATATATTGATCTTGCATGTGGTTCCTATAAGCTTCGTTAGTTC
GCCATAGCAACGCCAAACGTCTCAAGACTTGCTTAGCAACATCGATGTCT
CCAACAACAGAGACGGAGTAGGCATTCTCACCACCGCAACATGATTGAGC
ATTATAGCATTGGGTATACGATCGACATTTGGTGCGACATTCTGTATCGT
TAACCAAATGACCTTTAGGATACACATTCCCACAAAGACATTTAGAACCT
TGGGTAGCTGCTAGAATGTAACCAACATCCTGGCAGATTCGTTGAGACCT
TGCATTAGAGCTTTCTCTTCCCATATCGGTTTCTTTTCCAGAGTCAGGAA
ATGTATCGAAACAGCCTTCAACTTTGTAAGATTCGACGGTCTTTTTCGAT
GGTTCTTCGACTTCAAATTCATTGGTGGTGTCGTTAATGGGAACAGCAAA
TGTAGTTCTGAATACCATCACGAGAATAAAGATGCTTGGTAAGGGCAATG
TCATGCTAAAATGAATGGTAAGTAGAAATTAAATGTACTGTCTAGTAAAA
CTAGATTAAGATAAAAATCTTAAGTCATTAAAAAAACTCCTGTTGATACT
CATTTTTTTTGAATGATGAAAATACAGCTACGAGACCATGGGCCACTTTT
CAGCGTAGTCTGGTCACTCCCGGGTGAGATAAGGGGTTGTTTTAACAAGT
TTTTATCTCCAAGAAAAAAAAGAAGATAACACACCTTTTCAACCGTCCTC
GCGTGGTCAGGCGCGTGCCATTTAAGAGCTCCGACCATAGTGAACTTTAA
TATTTGCCACGTACAAAATTTCTACTTGATGTAGCCCACAAAACTTTAGC
ATGTTATACATTTTCTATTAGGCCAGTTATCCTTGAGTCTGAAAATTTAA
GAACCGCAATGAAAAAATTTGATGAAGAAGAAAATGAAGACTTTTGCAAA
GAAAGAGTATTTCAACTTTGAAGAGCTTTTTTTCGGCGAAGAAAAAACAT
TTCCAATTTTTTTTTGCGGTAGATGGTGTATCTTTTACTGAACTAAAAAT
AAATTTTCGAAAATTTTTTCTAAAAGCTTATTTGTCTCAAAATCTTGAAA
ATAGTGATTTTTGACCAGTTTTTCATCCAAATTTTTCGTAGAAAAACAGC
CATAAATTTAGAAAATTTTATTCCGAAAATTTTAAAACAGTTAAATTCTT
TGCTGACAGTTTGAAAAAACTTTGAAACAAAAAGGTTAATTACCCATTAA
AACTTAACACTTTTTATAAAAGAAGGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACCATTGCTCCATTT
CAATTCGTAGGTACCCAACAAGCGGAAGGTTCCCTTCCACTTATAAACAA
CGTCGATTTTCTTACGCATTAAATCAATAGTGATTTGCCTACCTGGTTCA
ACTTCGACTGCAACTTCAGTACTATCGGACGTCTCAGTAGTCTTGGTTTC
ACTGCGCTCTGAACTGAATGAAAACGATGACGATACTTCGGCTGAAAACT
CAACTGCTGCTTTTTGACCAAAGAAGGTTGATTCATATCCAGCAGTGTAG
CCAAGTGTGAGCCCAACATCAAAACCAGTTCCAATGGTAAGAGTTTTCTC
AACAGCGATGGTCACTGATAAGGATTTGGTGCAGGTGTATTTGACGTTCG
ATTGGAAGCATTGGACAGGGCGAAAGTCTTTGACTCGTTCTGGTTTAGCG
GTTGTTGGTTCAGTTTTATCCTCAACAATGAAAGACACTGGACGCAATTT
TAATGCTTCTTCTGGTTCTGCTATGTTCTTGCATGAATAAGATTCACTCT
CTGGTGTCTCATCTTTGGCATCCATTGAACATTCTTTGTAGCCTCCAGAC
GATCGTTTGGTCTTGATTACAAGTGAAGGATTATCGATGAAAGAATTTCC
ATTGTAAGGACCCATCTGGCAACATTTGAATTCCTCGATACATCCCAATC
TTTCACAGCTATTACGATACAGGCCGGAAATGAAATAACCAGCATTGCAC
TTAGTCCATCCTTTGCGATCAAGTGAAGCATGAGCATCATGGTTATAGCA
TCTTCCCCATTGTTCGCCTTGTGATTTTGGCTTGCAGCAATAGAATTCTT
CCAAATTCTCAAGACCAGCGCCAGGAGAGGTGTAGACGCCGGAAATGTAG
TAACCAGCTCTACAGCTGTGCCATCCTTTATTGTTAAACTTTTTATGTAG
ATTCAAAGCGTAGCAATCAGCTTCACCACGCATCGGATGTAATTCTCTAG
GTGCTGTTTTACATTCTCCTTCTTCAAGACGGCCGAGTCTTTCATCCCAC
CAAACATGTGGACTTCTATAGACACCAGTTAGAAAATGTCCAGCTTGACA
CTTTGACCAGCCTCCGTTGTCAATAGAATTCCACCAGTTAGCTCGTTGCG
TATTCTGTTCTTGCTCATGAATATATTGATTTTGCATGTGGTTCCTATAA
GCCTCGTTAGTTCGCCATAGCAACGCCAAACGTCTCAAGACTTGCTTAGC
AACATCGATGTCTCCAACAACAGAGACGGAGTAGGCATTCTCACCACCGC
AACATGATTGAGCATTATAACATTGGGTATACGATCGACATTTGGTGCGA
CATTCTGTATCATTAACCAAATGACCTTTAGGATACACATTCCCACAAAG
ACATCTAGAACCTTGGGTAGCTGCTAAAATGTAACCAACATCTTGGCAGA
TTCGTTGACACCTTGCATTAGAGCTTTCTCTTCCCATATCGGTTTCTTTT
CCAGAGTCAGGAAATGTATTGAAACATCCTTCAATTTTGTACGACTCTAC
GGTCTTTTTCGATGGTTCTTTTACTTCAAATTCATTGGTGGTGTTGTTAA
TGGGAACAGCGAATGTAGTTCTGAATACCACCACGATAATAAAGATTGAT
AAGGGCAATGCCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031581XLOC_031581Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049819-exon-scaffold_166-1575043694:608380..609007TCONS_00049819-exon-scaffold_166-1575043694:608380..609007Clytia hemisphaericaexon
TCONS_00049819-exon-scaffold_166-1575043694:607804..607844TCONS_00049819-exon-scaffold_166-1575043694:607804..607844Clytia hemisphaericaexon
TCONS_00049819-exon-scaffold_166-1575043694:603343..604690TCONS_00049819-exon-scaffold_166-1575043694:603343..604690Clytia hemisphaericaexon
TCONS_00049819-exon-scaffold_166-1510915933:608380..609007TCONS_00049819-exon-scaffold_166-1510915933:608380..609007Clytia hemisphaericaexon
TCONS_00049819-exon-scaffold_166-1510915933:607804..607844TCONS_00049819-exon-scaffold_166-1510915933:607804..607844Clytia hemisphaericaexon
TCONS_00049819-exon-scaffold_166-1510915933:603343..604690TCONS_00049819-exon-scaffold_166-1510915933:603343..604690Clytia hemisphaericaexon
TCONS_00049819-exon-scaffold_166-1491911889:608380..609007TCONS_00049819-exon-scaffold_166-1491911889:608380..609007Clytia hemisphaericaexon
TCONS_00049819-exon-scaffold_166-1491911889:607804..607844TCONS_00049819-exon-scaffold_166-1491911889:607804..607844Clytia hemisphaericaexon
TCONS_00049819-exon-scaffold_166-1491911889:603343..604690TCONS_00049819-exon-scaffold_166-1491911889:603343..604690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:603343..609007 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0793867	0	0	0	0	0	0	0	0	0	0.0289434	0.0119575	0	0	0	0	0.0948614	0	0	0.0249039	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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