TCONS_00049821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049821
Unique NameTCONS_00049821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049821 ID=TCONS_00049821|Name=TCONS_00049821|organism=Clytia hemisphaerica|type=transcript|length=2040bp
ttttttttgaataaaattccagccaaaaataCAATTATTTGACAAATCCT
TGGACGTAACGCTTGGTTTAAAGAAAATACTTCAGGTTACAAGTTAAATA
AAAATGCTATCAGTTAAAATGCTCAAATTTccatacaaaaaaaaatgttc
acttatgtgtgtttcttaaaaatagTTCAACCagattttggtgtttttgc
acGAGCTTGTTGTTTgggtttttttaatttcttgataTTACAATTTGCAC
CATCGCCCGACGCATGCTCACAGATCTTTTCATTCCCAAATTGATCAGTC
ACCAGCACTTGTAGCGTGTCAGTATCGGGAAACTCCCACGTTCCAAAAGC
AAACATATCTCGATTACGACCTGATAGGACGGTTGTAACATCTTGGTGAC
CAGAATTATCACCATTGCTCCATTTCAATTCATAGGTACCCAACAAGCGG
AAGGTTCCTTTCCACTTATAAACAACGTCGATTTTCTTACGCATTAAATC
AATAGTGATTTGCCTACCTGGTTTAACTTCGACTGCAACTTCAGTACTAT
CGGATGTCTCAGTACTCTTGGTTTCACTGCGCTCTGAACTGAATGAAAAC
GATGTCGATACTTCGGCTGAAAACTCAACTGATGCTTTTTGACCAAAGAA
GGATGAGTCATACCCAGCAGTGTAGCCAAGTGTGAGCCCAACATCAAAAC
CAGTTCCAATGGTAAGAGTTTTCTCAACAGCGATGGTCACTGATAAGGAT
TTGGTGCAGGTGTATTTGACGTTCGATTGGAAGCATTGGACAGGGCGAAA
GTCTTTGACTCGTTCTGGTTTGGCGGTTGTTGGTTCAGTTTTATCCTCAA
CAATGAAAGACACTGGACGCAATTTTAATGCTTCTTCTGGTTCTGCTATG
TTCTTGCATGAATAAGATTCACTCTCTGGTGTCTCATCTTTAGCATTCAT
TGAACATTCTTTGTAGCCTCCAGACGATCGTTTGGTCTTGATTACAAGTG
ATGGATTATCGATGAAAGAATTTCCATTGTAAGGACCCATCTGGCAACAT
TTGAATTCCTCAATACATCCCAATCTTTCACAGCTACTACGATACAAACC
AGAGATGAAATAACCAGCATTGCACTTGACCCATCCTTTGCGATCAAGTG
AATCCCAAGCATTATGGTTATAACATCTTCCCCAGTGTTCACCTTGTGAT
CTTGGCTTGCAGCAATAGAATTCTTCCAAATTTTTAAGACCATAGCCAGA
AGTGGTGTAGACGCCGGAAATGTAGTAACCAGCTCTACAGCTCTGCCATC
CTTTATTGTCAAACTCGTTCCATAGATTCAAAGTGTAGCAATCGGCTTCC
CCACGCATCGGATGTAATTCTCTAGGTGCTGTTTTACACTCTCCTGATTC
AAGACGGCCGAGtctttcatcaaaataattatattGGCTTCTATAAACAC
CAGTTAGAAAATGTCCAGCTTCACACTTTGACCAGCCTCCGTTGTCAATA
GAAGACCACCAGTTAGCTTGATGCGTATTTTGTTCTTGCTCATGAATATA
TTGATCTTGCATGTGGTTCCTATAAGCTTCGTTAGTTCGCCATAGCAACG
CCAAACGTCTCAAGACTTGCTTAGCAACATCGATGTCTCCAACAACAGAG
ACGGAGTAGGCATTCTCACCACCGCAACATGATTGAGCATTATAGCATTG
GGTATACGATCGACATTTGGTGCGACATTCTGTATCATTAACCAAATGAC
CTTTAGGATACACATTCCCACAAAGACATCTAGAACCTTGGGTAGCTGCT
AAAATGTAACCAACATCTTGGCAGATTCGTTGACACCTTGCATTAGAGCT
TTCTCTTCCCATATCGGTTTCTTTTCCAGAGTCAGGAAATGTATTGAAAC
ATCCTTCAATTTTGTACGACTCTACGGTCTTTTTCGATGGTTCTTTTACT
TCAAATTCATTGGTGGTGTTGTTAATGGGAACAGCGAATGTAGTTCTGAA
TACCACCACGATAATAAAGATTGATAAGGGCAATGCCATG
Run BLAST on NCBI

transcript from alignment at scaffold_166:603343..609030-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049821 ID=TCONS_00049821|Name=TCONS_00049821|organism=Clytia hemisphaerica|type=transcript|length=5688bp|location=Sequence derived from alignment at scaffold_166:603343..609030- (Clytia hemisphaerica)
TTTTTTTTGAATAAAATTCCAGCCAAAAATACAATTATTTGACAAATCCT
TGGACGTAACGCTTGGTTTAAAGAAAATACTTCAGGTTACAAGTTAAATA
AAAATGCTATCAGTTAAAATGCTCAAATTTCCATACAAAAAAAAATGTTC
ACTTATGTGTGTTTCTTAAAAATAGTTCAACCAGATTTTGGTGTTTTTGC
ACGAGCTTGTTGTTTGGGTTTTTTTAATTTCTTGATATTACAATTTGCAC
CATCGCCCGACGCATGCTCACAGATCTTTTCATTCCCAAATTGATCAGTC
ACCAGCACTTGTAGCGTGTCAGTATCGGGAAACTCCCACGTTCCAAAAGC
AAACATATCTCGATTACGACCTGATAGGACGGTTGTAACATCTTGGTGAC
CAGAATTATCACCATTGCTCCATTTCAATTCATAGGTACCCAACAAGCGG
AAGGTTCCTTTCCACTTATAAACAACGTCGATTTTCTTACGCATTAAATC
AATAGTGATTTGCCTACCTGGTTTAACTTCGACTGCAACTTCAGTACTAT
CGGATGTCTCAGTACTCTTGGTTTCACTGCGCTCTGAACTGAATGAAAAC
GATGTCGATACTTCGGCTGAAAACTCAACTGATGCTTTTTGACCAAAGAA
GGTTGATTCATATCCAGCAGTGTAGCCAAGTGTGAGCCCAACATCAAAAC
CAGTTCCAATGGTAAGAGTTTTCTCAACAGCGATGGTCACTGATAAGGAT
TTGGTGCAGGTGTATTTGACGTTCGATTGGAAGCATTGGACAGGGCGAAA
GTCTTTGACTCGTTCTGGTTTGGCGGTTGTTGGTTCAGTTTTATCCTCAA
CAATGAAAGACACTGGACGCAATTTTAATGCTTCTTCTGGTTCTGCTATG
TTCTTGCATGAATAAGATTCACTCTCTGGTGTCTCATCTTTAGCATTCAT
TGAACATTCTTTGTAGCCTCCAGACGATCGTTTGGTCTTGATTACAAGTG
ATGGATTATCGATGAAAGAATTTCCATTGTAAGGACCCATCTGGCAACAT
TTGAATTCCTCAATACATCCCAATCTTTCACAGCTATTACGATACAGGCC
GGAAATGAAATAACCAGCATTGCACTTAGTCCATCCTTTGCGATCAAGTG
AAGCATGAGCATCATGGTTATANTTGACCAAAGAAGGATGAGTCATACCC
AGCAGTGTAGCCAAGTGTGAGCCCAACATCAAAACCAGTTCCAATGGTAA
GAGTTTTCTCAACAGCGATGGTCACTGATAAGGATTTGGTGCAGGTGTAT
TTGACGTTCGATTGGAAGCATTGGACAGGGCGAAAGTCTTTGACTCGTTC
TGGTTTGGCGGTTGTTGGTTCAGTTTTATCCTCAACAATGAAAGACACTG
GACGCAATTTTAATGCTTCTTCTGGTTCTGCTATGTTCTTGCATGAATAA
GATTCACTCTCTGGTGTCTCATCTTTAGCATTCATTGAACATTCTTTGTA
GCCTCCAGACGATCGTTTGGTCTTGATTACAAGTGATGGATTATCGATGA
AAGAATTTCCATTGTAAGGACCCATCTGGCAACATTTGAATTCCTCAATA
CATCCCAATCTTTCACAGCTACTACGATACAAACCAGAGATGAAATAACC
AGCATTGCACTTGACCCATCCTTTGCGATCAAGTGAATCCCAAGCATTAT
GGTTATAACATCTTCCCCAGTGTTCACCTTGTGATCTTGGCTTGCAGCAA
TAGAATTCTTCCAAATTTTTAAGACCATAGCCAGAAGTGGTGTAGACGCC
GGAAATGTAGTAACCAGCTCTACAGCTCTGCCATCCTTTATTGTCAAACT
CGTTCCATAGATTCAAAGTGTAGCAATCGGCTTCCCCACGCATCGGATGT
AATTCTCTAGGTGCTGTTTTACACTCTCCTGATTCAAGACGGCCGAGTCT
TTCATCAAAATAATTATATTGGCTTCTATAAACACCAGTTAGAAAATGTC
CAGCTTCACACTTTGACCAGCCTCCGTTGTCAATAGAAGACCACCAGTTA
GCTTGATGCGTATTTTGTTCTTGCTCATGAATATATTGATCTTGCATGTG
GTTCCTATAAGCTTCGTTAGTTCGCCATAGCAACGCCAAACGTCTCAAGA
CTTGCTTAGCAACATCGATGTCTCCAACAACAGAGACGGAGTAGGCATTC
TCACCACCGCAACATGATTGAGCATTATAGCATTGGGTATACGATCGACA
TTTGGTGCGACATTCTGTATCGTTAACCAAATGACCTTTAGGATACACAT
TCCCACAAAGACATTTAGAACCTTGGGTAGCTGCTAGAATGTAACCAACA
TCCTGGCAGATTCGTTGAGACCTTGCATTAGAGCTTTCTCTTCCCATATC
GGTTTCTTTTCCAGAGTCAGGAAATGTATCGAAACAGCCTTCAACTTTGT
AAGATTCGACGGTCTTTTTCGATGGTTCTTCGACTTCAAATTCATTGGTG
GTGTCGTTAATGGGAACAGCAAATGTAGTTCTGAATACCATCACGAGAAT
AAAGATGCTTGGTAAGGGCAATGTCATGCTAAAATGAATGGTAAGTAGAA
ATTAAATGTACTGTCTAGTAAAACTAGATTAAGATAAAAATCTTAAGTCA
TTAAAAAAACTCCTGTTGATACTCATTTTTTTTGAATGATGAAAATACAG
CTACGAGACCATGGGCCACTTTTCAGCGTAGTCTGGTCACTCCCGGGTGA
GATAAGGGGTTGTTTTAACAAGTTTTTATCTCCAAGAAAAAAAAGAAGAT
AACACACCTTTTCAACCGTCCTCGCGTGGTCAGGCGCGTGCCATTTAAGA
GCTCCGACCATAGTGAACTTTAATATTTGCCACGTACAAAATTTCTACTT
GATGTAGCCCACAAAACTTTAGCATGTTATACATTTTCTATTAGGCCAGT
TATCCTTGAGTCTGAAAATTTAAGAACCGCAATGAAAAAATTTGATGAAG
AAGAAAATGAAGACTTTTGCAAAGAAAGAGTATTTCAACTTTGAAGAGCT
TTTTTTCGGCGAAGAAAAAACATTTCCAATTTTTTTTTGCGGTAGATGGT
GTATCTTTTACTGAACTAAAAATAAATTTTCGAAAATTTTTTCTAAAAGC
TTATTTGTCTCAAAATCTTGAAAATAGTGATTTTTGACCAGTTTTTCATC
CAAATTTTTCGTAGAAAAACAGCCATAAATTTAGAAAATTTTATTCCGAA
AATTTTAAAACAGTTAAATTCTTTGCTGACAGTTTGAAAAAACTTTGAAA
CAAAAAGGTTAATTACCCATTAAAACTTAACACTTTTTATAAAAGAAGGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCACCATTGCTCCATTTCAATTCGTAGGTACCCAACAAGCGGAA
GGTTCCCTTCCACTTATAAACAACGTCGATTTTCTTACGCATTAAATCAA
TAGTGATTTGCCTACCTGGTTCAACTTCGACTGCAACTTCAGTACTATCG
GACGTCTCAGTAGTCTTGGTTTCACTGCGCTCTGAACTGAATGAAAACGA
TGACGATACTTCGGCTGAAAACTCAACTGCTGCTTTTTGACCAAAGAAGG
TTGATTCATATCCAGCAGTGTAGCCAAGTGTGAGCCCAACATCAAAACCA
GTTCCAATGGTAAGAGTTTTCTCAACAGCGATGGTCACTGATAAGGATTT
GGTGCAGGTGTATTTGACGTTCGATTGGAAGCATTGGACAGGGCGAAAGT
CTTTGACTCGTTCTGGTTTAGCGGTTGTTGGTTCAGTTTTATCCTCAACA
ATGAAAGACACTGGACGCAATTTTAATGCTTCTTCTGGTTCTGCTATGTT
CTTGCATGAATAAGATTCACTCTCTGGTGTCTCATCTTTGGCATCCATTG
AACATTCTTTGTAGCCTCCAGACGATCGTTTGGTCTTGATTACAAGTGAA
GGATTATCGATGAAAGAATTTCCATTGTAAGGACCCATCTGGCAACATTT
GAATTCCTCGATACATCCCAATCTTTCACAGCTATTACGATACAGGCCGG
AAATGAAATAACCAGCATTGCACTTAGTCCATCCTTTGCGATCAAGTGAA
GCATGAGCATCATGGTTATAGCATCTTCCCCATTGTTCGCCTTGTGATTT
TGGCTTGCAGCAATAGAATTCTTCCAAATTCTCAAGACCAGCGCCAGGAG
AGGTGTAGACGCCGGAAATGTAGTAACCAGCTCTACAGCTGTGCCATCCT
TTATTGTTAAACTTTTTATGTAGATTCAAAGCGTAGCAATCAGCTTCACC
ACGCATCGGATGTAATTCTCTAGGTGCTGTTTTACATTCTCCTTCTTCAA
GACGGCCGAGTCTTTCATCCCACCAAACATGTGGACTTCTATAGACACCA
GTTAGAAAATGTCCAGCTTGACACTTTGACCAGCCTCCGTTGTCAATAGA
ATTCCACCAGTTAGCTCGTTGCGTATTCTGTTCTTGCTCATGAATATATT
GATTTTGCATGTGGTTCCTATAAGCCTCGTTAGTTCGCCATAGCAACGCC
AAACGTCTCAAGACTTGCTTAGCAACATCGATGTCTCCAACAACAGAGAC
GGAGTAGGCATTCTCACCACCGCAACATGATTGAGCATTATAACATTGGG
TATACGATCGACATTTGGTGCGACATTCTGTATCATTAACCAAATGACCT
TTAGGATACACATTCCCACAAAGACATCTAGAACCTTGGGTAGCTGCTAA
AATGTAACCAACATCTTGGCAGATTCGTTGACACCTTGCATTAGAGCTTT
CTCTTCCCATATCGGTTTCTTTTCCAGAGTCAGGAAATGTATTGAAACAT
CCTTCAATTTTGTACGACTCTACGGTCTTTTTCGATGGTTCTTTTACTTC
AAATTCATTGGTGGTGTTGTTAATGGGAACAGCGAATGTAGTTCTGAATA
CCACCACGATAATAAAGATTGATAAGGGCAATGCCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031581XLOC_031581Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049821-exon-scaffold_166-1575043694:608380..609030TCONS_00049821-exon-scaffold_166-1575043694:608380..609030Clytia hemisphaericaexon
TCONS_00049821-exon-scaffold_166-1575043694:606770..607844TCONS_00049821-exon-scaffold_166-1575043694:606770..607844Clytia hemisphaericaexon
TCONS_00049821-exon-scaffold_166-1575043694:603343..603656TCONS_00049821-exon-scaffold_166-1575043694:603343..603656Clytia hemisphaericaexon
TCONS_00049821-exon-scaffold_166-1510915933:608380..609030TCONS_00049821-exon-scaffold_166-1510915933:608380..609030Clytia hemisphaericaexon
TCONS_00049821-exon-scaffold_166-1510915933:606770..607844TCONS_00049821-exon-scaffold_166-1510915933:606770..607844Clytia hemisphaericaexon
TCONS_00049821-exon-scaffold_166-1510915933:603343..603656TCONS_00049821-exon-scaffold_166-1510915933:603343..603656Clytia hemisphaericaexon
TCONS_00049821-exon-scaffold_166-1491911889:608380..609030TCONS_00049821-exon-scaffold_166-1491911889:608380..609030Clytia hemisphaericaexon
TCONS_00049821-exon-scaffold_166-1491911889:606770..607844TCONS_00049821-exon-scaffold_166-1491911889:606770..607844Clytia hemisphaericaexon
TCONS_00049821-exon-scaffold_166-1491911889:603343..603656TCONS_00049821-exon-scaffold_166-1491911889:603343..603656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:603343..609030 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0377896	0	0	0	0.118674	124.992	139.271	98.5557	71.8162	111.821	24.0838	0.020547	0	0	1.79683e-10	13.6707	12.0692	0.308259	0	2.30448e-09	0.110794	0	2.46585e-10	0.0208033	0	0	0	0.043012	0.0438225
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002889WSC_carb-bd
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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