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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049822 ID=TCONS_00049822|Name=TCONS_00049822|organism=Clytia hemisphaerica|type=transcript|length=1676bp
GTTTATATTGCCAACTGAAAAGAATCAAATACAATGTCAAATATCAACAA
TGAAGATGAGAGaaCTCAACCAACCATAAATACCAatgatgattttcgaa
aatttggaaaaaagatGGTTGATCTTATTGCAGATTACCATGAAAACGTT
CCAAACATGCCGGTACTACCGGATGTGAAACCCGGATATCTTGCAAAATT
ACTGCCGGATGAGGCGCCAAAGGAACCAGAACCTTGGGAAAGCAtttgtg
aagattttaagaaagCCATTGTTCCGGGTATCACGCCCTGGAATTCACCG
AACTTTCATGCTTACTTCCCAACAGCAAACAGTTATGCAGCTGTAATGGG
TGGGATGTTGGCTGATACAATTGGATGTGTTGGTTTTACGTGGATAGCTT
CTCCCGCTTGCACTGAACTCGAAATGCTAACTATGGATTGGCTTGCAAAG
ATGTTTGATTTGCCTGATGTATTTCAACACGCGGCCGAAGGACATGGTGG
TGGGGTTATTCAAGGATCCGCAAGTGAGTCAACATTGGTTGCAATATTAG
CAGCAAAACATCGCAAGTTGAGTCAATATGGTCACGACGAAGATTTCGGA
TCTAAACTAATAGCGTACACCTCAAAACAATCTCATTCGTCAGTTGAAAA
AGATGTGCGATTAGCTGGAACAAAATTAAGATTACTTGAAACAGATGAGA
GATTTAGGCTGCGAGGGGATGAGCTGAAAAGAGCAATCGAGGAAGATAAA
GCTAAGGGTTTGATTCCTTTCTTTGTGTGTGCGTCCGCCGGTACAACCAA
CGTTTGCGCGTTTGACGCACTCGATGAGATAAGTGCTGTTTCAGGGGAGG
AAGGACTGTGGATGCATGTTGACGCTGCATATGCAGGAGCGGCGATGATT
TGTCCGGAGTATCGATATCTTATGAAGGGAATTGAAAATACCGATTCTCT
TGTTGTTAGCTGTAATAAGTGGCTGATGGTGAATTTCCCATGTGCGGCCA
TGTTTGTTCGGGATTCACTGGATTTGATTAATCTGTTTGATATCAATCCA
CTGTATTTGAAACATGATTATGAACAGGAAATCCCTGACTTCAGGCACTG
GCAAATCCCTCTTGGACGACGTTTTCGATCTTTAAAACTTTGGATGGTGC
TTAAATCGTATGGAGTCAAAGGTCTTCAAGAAAATATACGACGTCAAATT
CAACAAGCTCAATTATTTGAAGGAATGATACGTGATGATGTAAGGTTTGA
AGTGGTCAATGATGTGTTGATGGGTCTCGTTTGTTTCAGATTAATTGGTG
ATAACACACTAAATGACAAGTTGAATAGGCGAGTCAACGAGGCTCGTAAA
ATACACATGACACCTGCATATGTTAATGATCAGTTTGTTTTACGTTTCGT
AATAGCGTCTCGATTAACCGAAAATAAGGATGTCAAATTTGCAtgggatg
aaataaaaaatcatgcaGATATACTTTCAAAGAATGAACATAATAAGCAA
AGAATCAATGAATGATAATCACAGACGCAAAACAAACTCAAGGAGATGAA
ACTCATGgataaaatataaagttttaaatttattaAACATTAGAAAATCA
AACCATTTCAAGTACATCCCTGTGTCATAGATttgctgggaccccagccc
cactgaaaaatttggcaaaaattgcg Run BLAST on NCBI transcript from alignment at scaffold_166:620011..624382- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049822 ID=TCONS_00049822|Name=TCONS_00049822|organism=Clytia hemisphaerica|type=transcript|length=4372bp|location=Sequence derived from alignment at scaffold_166:620011..624382- (Clytia hemisphaerica)
GTTTATATTGCCAACTGAAAAGAATCAAATACAATGTCAAATATCAACAA
TGAAGATGAGAGGTAATTAATTCTAATTGAATTTTTCACTGTTCCTTATC
ATTTAAGATAGACTACTAAACAAGGCTGGTGTACCGTGGCTGATATGGGC
AACCCTGTCCCTATCTTGATGCTTGCTTGATGAGCGGTCAAAGTTAGGCG
GCCGCCCATAATCTATATTTTTAGGCGGTCGCCTATCTCATTGTTTCTGG
TCTGTATTTTTATCGTCTTAACTTAGGCGGCCACCTATCATAAGTCAGGC
GGCCGCCTCTCTTAAGTCAGGCGGCCGCCTATCTTTGGCTTGAAATTTTT
TTAATTCTTGCACGTTCTCGAAAAAACCAAAACAAACATGGCGTCGACAA
GAGATTGATGACATTGCAAATCTCAAGGTGGTCAAGGTCTTCAAGTTTGA
ATAATATTTAACCAAATCCAAAGTAGATGAATTTTTTGTTCTGCTCACCT
CTAATACTGTATCCATGGTAAAAATGATATTTATTTAAAATTTTATTGTA
CAGCAGCCAAAAAGTTAACCAAGCCAAACCAGTCTAAAAGTCAATAGAGG
CGGCCATCTAAGTCAAAATAGTTGAGTTGAGACGATAATCTGCGAACCAG
ATATTTCGAAGATAGGCGGCCGTCTAACTTTGACCGCCCACCTAAGACAG
GGACAGGGTTGCCCATGTCAGCCACGGTACTTGTGAGAAGTTTCCAGGGA
CTTACAACCATTAAAATCTATTGTATGAATATATACAGCTTTTTCTAAAA
CACCCCTGTATCAACGATCCCTTGAAGTTTCTCTGGCTTTAATCTTCCGG
AGGGGTTTTAGGACATTATTTTAGCATAGCAACGATTGTAGAACCTTTTA
TTTACGATTTTGCATTATTGTCCATAACCGCCTGATGGTACAAAAGATTT
ATGAAATTTATCACCTAGTATACTTTTGTCAGACTTTTTGTTTGCGATTT
CCTTCATATTCTAGGAAAGTTTCCTGAATGGGCTTTTTATTCCAGAAAAA
AAATTGTACCCCCTATGTCGAGGAGGTCTATTTTAGAAAAGGTGACCCCC
TGGATTTTTACACTCGAAAAGCCAGACCAACCTGAATTTTTTATTTTTCG
TCACACCTCCTCAACATAGGAGGTACAGACTATTTCTGAAATACAGTAGT
AACCTTTGAAAATATAACTTGACCAAAATCGTATGATTTTATTTTAGAAC
TCAACCAACCATAAATACCAATGATGATTTTCGAAAATTTGGAAAAAAGA
TGGTTGATCTNACAAGGCTGGTGTACCGTGGCTGATATGGGCAACCCTGT
CCCTATCTTGATGCTTGCTTGATGAGCGGTCAAAGTTAGGCGGCCGCCCA
TAATCTATATTTTTAGGCGGTCGCCTATCTCATTGTTTCTGGTCTGTATT
TTTATCGTCTTAACTTAGGCGGCCACCTATCATAAGTCAGGCGGCCGCCT
CTCTTAAGTCAGGCGGCCGCCTATCTTTGGCTTGAAATTTTTTTAATTCT
TGCACGTTCTCGAAAAAACCAAAACAAACATGGCGTCGACAAGAGATTGA
TGACATTGCAAATCTCAAGGTGGTCAAGGTCTTCAAGTTTGAATAATATT
TAACCAAATCCAAAGTAGATGAATTTTTTGTTCTGCTCACCTCTAATACT
GTATCCATGGTAAAAATGATATTTATTTAAAATTTTATTGCACAGCAGCC
AAAAAGTTAACCAAGCCAAACCAGTCTAAAAGTCAATAGAGGCGGCCATC
TAAGTCAAAATAGTTGAGTTGAGACGATAATCTGCGAACCAGATATTTCG
AAGATAGGCGGCCGTCTAACTTTGACCGCCCACCTAAGACAGGGACAGGG
TTGCCCATGTCAGCCACGGTACTTGTGAGAAGTTTCCAGGGACTTACAAC
CATTAAAATCTATTGTATGAATATATACAGCTTTTTCTAAAACACCCCTG
TATCAACGATCCCTTGAAGTTTCTCTGGCTTTAATCTTCCGGAGGGGTTT
TAGGACATTATTTTAGCATAGCAACGATTGTAGAACCTTTTATTTACGAT
TTTGCATTATTGTCCATAACCGCCTGATGGTACAAAAGATTTATGAAATT
TATCACCTAGTATACTTTTGTCAGACTTTTTGTTTGCGATTTCCTTCATA
TTCTAGGAAAGTTTCCTGAATGGGCTTTTTATTCCAGAAAAAAAATTGTA
CCCCCTATGTCGAGGAGGTCTATTTTAGAAAAGGTGACCCCCTGGATTTT
TACACTCGAAAAGCCAGACCAACCTGAATTTTTTATTTTTCGTCACACCT
CCTCAACATAGGAGGTACAGACTATTTCTGAAATACAGTAGTAACCTTTG
AAAATATAACTTGACCAAAATCGTATGATTTTATTTTAGAACTCAACCAA
CCATAAATACCAATGATGATTTTCGAAAATTTGGAAAAAAGATGGTTGAT
CTTATTGCAGATTACCATGAAAACGTTCCAAACATGCCGGTACTACCGGA
TGTGAAACCCGGATATCTTGCAAAATTACTGCCGGATGAGGCGCCAAAGG
AACCAGAACCTTGGGAAAGCATTTGTGAAGATTTTAAGAAAGCCATTGTT
CCGGGTATCACGCCCTGGAATTCACCGAACTTTCATGCGTAAGTTGATTG
CTTAAGACTTCCAGATTCGAGAATTTTGATCAATTTCGACCGGGTTAGCA
TAACTCTGGTACAAAAATATTAATTAAAATTTAATATTTTGACAATACAA
TTATTTCGAACTTAGATAAAAAATATGTTAATTAAATAAAAAACAAAAAA
AATTTGCAGCTTTTTCTATGTTTACTTTTTGAGATATTTAGGTTTTCAAT
TTCGACATGGTATTTCTGGACCACCCGGTATATTTCATTTCAACAAATTA
TCAGAGGATTAATATTTAACAGAGTATTTAAAAACAAATATTTCCCTATC
ATTTTAGTTACTTCCCAACAGCAAACAGTTATGCAGCTGTAATGGGTGGG
ATGTTGGCTGATACAATTGGATGTGTTGGTTTTACGTGGATAGCTTCTCC
CGCTTGCACTGAACTCGAAATGCTAACTATGGATTGGCTTGCAAAGATGT
TTGATTTGCCTGATGTATTTCAACACGCGGCCGAAGGACATGGTGGTGGG
GTTATTCAAGGATCCGCAAGTGAGTCAACATTGGTTGCAATATTAGCAGC
AAAACATCGCAAGTTGAGTCAATATGGTCACGACGAAGATTTCGGATCTA
AACTAATAGCGTACACCTCAAAACAATCTCATTCGTCAGTTGAAAAAGAT
GTGCGATTAGCTGGAACAAAATTAAGATTACTTGAAACAGATGAGAGATT
TAGGCTGCGAGGGGATGAGCTGAAAAGAGCAATCGAGGAAGATAAAGCTA
AGGGTTTGATTCCTTTCTTTGTGTGTGCGTCCGCCGGTACAACCAACGTT
TGCGCGTTTGACGCACTCGATGAGATAAGTGCTGTTTCAGGGGAGGAAGG
ACTGTGGATGCATGTTGACGCTGCATATGCAGGAGCGGCGATGATTTGTC
CGGAGTATCGATATCTTATGAAGGGAATTGAAAATACCGATTCTCTTGTT
GTTAGCTGTAATAAGTGGCTGATGGTGAATTTCCCATGTGCGGCCATGTT
TGTTCGGGATTCACTGGATTTGATTAATCTGTTTGATATCAATCCACTGT
ATTTGAAACATGATTATGAACAGGAAATCCCTGACTTCAGGCACTGGCAA
ATCCCTCTTGGACGACGTTTTCGATCTTTAAAACTTTGGATGGTGCTTAA
ATCGTATGGAGTCAAAGGTCTTCAAGAAAATATACGACGTCAAATTCAAC
AAGCTCAATTATTTGAAGGAATGATACGTGATGATGTAAGGTTTGAAGTG
GTCAATGATGTGTTGATGGGTCTCGTTTGTTTCAGATTAATTGGTGATAA
CACACTAAATGACAAGTTGAATAGGCGAGTCAACGAGGCTCGTAAAATAC
ACATGACACCTGCATATGTTAATGATCAGTTTGTTTTACGTTTCGTAATA
GCGTCTCGATTAACCGAAAATAAGGATGTCAAATTTGCATGGGATGAAAT
AAAAAATCATGCAGATATACTTTCAAAGAATGAACATAATAAGCAAAGAA
TCAATGAATGATAATCACAGACGCAAAACAAACTCAAGGAGATGAAACTC
ATGGATAAAATATAAAGTTTTAAATTTATTAAACATTAGAAAATCAAACC
ATTTCAAGTACATCCCTGTGTCATAGATTTGCTGGGACCCCAGCCCCACT
GAAAAATTTGGCAAAAATTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049822-exon-scaffold_166-1575043694:624321..624382 | TCONS_00049822-exon-scaffold_166-1575043694:624321..624382 | Clytia hemisphaerica | exon |
| TCONS_00049822-exon-scaffold_166-1575043694:621695..621943 | TCONS_00049822-exon-scaffold_166-1575043694:621695..621943 | Clytia hemisphaerica | exon |
| TCONS_00049822-exon-scaffold_166-1575043694:620011..621375 | TCONS_00049822-exon-scaffold_166-1575043694:620011..621375 | Clytia hemisphaerica | exon |
| TCONS_00049822-exon-scaffold_166-1510915933:624321..624382 | TCONS_00049822-exon-scaffold_166-1510915933:624321..624382 | Clytia hemisphaerica | exon |
| TCONS_00049822-exon-scaffold_166-1510915933:621695..621943 | TCONS_00049822-exon-scaffold_166-1510915933:621695..621943 | Clytia hemisphaerica | exon |
| TCONS_00049822-exon-scaffold_166-1510915933:620011..621375 | TCONS_00049822-exon-scaffold_166-1510915933:620011..621375 | Clytia hemisphaerica | exon |
| TCONS_00049822-exon-scaffold_166-1491911889:624321..624382 | TCONS_00049822-exon-scaffold_166-1491911889:624321..624382 | Clytia hemisphaerica | exon |
| TCONS_00049822-exon-scaffold_166-1491911889:621695..621943 | TCONS_00049822-exon-scaffold_166-1491911889:621695..621943 | Clytia hemisphaerica | exon |
| TCONS_00049822-exon-scaffold_166-1491911889:620011..621375 | TCONS_00049822-exon-scaffold_166-1491911889:620011..621375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:620011..624382 - |
Blast
BLAST of TCONS_00049822 vs. Swiss-Prot (Human)
Match: DDC (Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2) HSP 1 Score: 513.457 bits (1321), Expect = 3.694e-177 Identity = 245/476 (51.47%), Postives = 332/476 (69.75%), Query Frame = 1
Query: 88 DDFRKFGKKMVDLIADYHENVPNMPVLPDVKPGYLAKLLPDEAPKEPEPWESICEDFKKAIVPGITPWNSPNFHAYFPTANSYAAVMGGMLADTIGCVGFTWIASPACTELEMLTMDWLAKMFDLPDVFQHAAEGHGGGVIQGSASESTLVAILAAK----HR------KLSQYGHDEDFGSKLIAYTSKQSHSSVEKDVRLAGTKLRLLETDERFRLRGDELKRAIEEDKAKGLIPFFVCASAGTTNVCAFDALDEISAVSGEEGLWMHVDAAYAGAAMICPEYRYLMKGIENTDSLVVSCNKWLMVNFPCAAMFVRDSLDLINLFDINPLYLKHDYEQE--IPDFRHWQIPLGRRFRSLKLWMVLKSYGVKGLQENIRRQIQQAQLFEGMIRDDVRFEVVNDVLMGLVCFRLIGDNTLNDKLNRRVNEARKIHMTPAYVNDQFVLRFVIASRLTENKDVKFAWDEIKN-HADIL 1476
+FR+ GK+MVD +A+Y E + V PDV+PGYL L+P AP+EP+ +E I D +K I+PG+T W+SP F AYFPTA+SY A++ ML IGC+GF+W ASPACTELE + MDWL KM +LP F + G GGGVIQGSASE+TLVA+LAA+ HR +L+Q E KL+AY+S Q+HSSVE+ + G KL+ + +D F +R L+ A+E DKA GLIPFF+ A+ GTT C+FD L E+ + +E +W+HVDAAYAG+A ICPE+R+L+ G+E DS + +KWL+VNF C+AM+V+ DL F ++P YLKH ++ I D+RHWQIPLGRRFRSLK+W V + YGVKGLQ IR+ +Q + FE ++R D RFE+ +V++GLVCFRL G N +N+ L +R+N A+KIH+ P ++ D+FVLRF I SR E+ V+ AW+ IK AD+L
Sbjct: 4 SEFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME----KLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADVL 475
The following BLAST results are available for this feature:
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